Wall clock time and date at job start Fri Apr 10 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00332 * 2 1 4 4 H 1.48503 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47303 * 299.99744 * 3 2 1 6 6 H 1.48506 * 109.47100 * 59.99681 * 3 2 1 7 7 C 1.37876 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99847 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.91693 * 297.54799 * 9 7 2 11 11 C 1.55162 * 111.00461 * 173.64780 * 9 7 2 12 12 C 1.54328 * 102.94192 * 206.42271 * 11 9 7 13 13 N 1.47020 * 107.26937 * 22.19069 * 12 11 9 14 14 C 1.34779 * 125.64422 * 181.03625 * 13 12 11 15 15 O 1.21363 * 119.99576 * 180.02562 * 14 13 12 16 16 C 1.49340 * 120.00057 * 0.02680 * 14 13 12 17 17 O 1.21376 * 120.00628 * 0.02562 * 16 14 13 18 18 N 1.34782 * 119.99949 * 179.97438 * 16 14 13 19 19 C 1.39809 * 119.99906 * 175.37817 * 18 16 14 20 20 C 1.38915 * 120.04864 * 214.82304 * 19 18 16 21 21 C 1.38095 * 119.94699 * 179.81616 * 20 19 18 22 22 C 1.38492 * 120.04935 * 0.44849 * 21 20 19 23 23 F 1.35096 * 119.95296 * 179.77087 * 22 21 20 24 24 C 1.38496 * 120.10355 * 359.78365 * 22 21 20 25 25 C 1.38094 * 120.04560 * 0.02562 * 24 22 21 26 26 C 1.47418 * 108.70518 * 1.05981 * 13 12 11 27 27 H 0.97001 * 119.99423 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99792 * 62.45003 * 10 9 7 29 29 H 1.09001 * 110.72048 * 88.06164 * 11 9 7 30 30 H 1.08997 * 110.87329 * 324.85563 * 11 9 7 31 31 H 1.08996 * 109.87734 * 262.77374 * 12 11 9 32 32 H 1.09000 * 109.88090 * 141.60821 * 12 11 9 33 33 H 0.97000 * 119.99886 * 355.39210 * 18 16 14 34 34 H 1.07993 * 120.02982 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.97694 * 180.23083 * 21 20 19 36 36 H 1.07995 * 119.97871 * 179.97438 * 24 22 21 37 37 H 1.07999 * 120.02237 * 179.97438 * 25 24 22 38 38 H 1.09009 * 110.36764 * 94.70995 * 26 13 12 39 39 H 1.09000 * 110.36638 * 217.02870 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.4607 -2.6320 1.1838 11 6 2.2196 -3.7007 -0.1591 12 6 1.3272 -4.7804 -0.8067 13 7 0.2070 -4.0870 -1.4592 14 6 -0.8058 -4.6809 -2.1212 15 8 -1.6806 -4.0061 -2.6235 16 6 -0.8515 -6.1691 -2.2366 17 8 0.0231 -6.8440 -1.7339 18 7 -1.8645 -6.7629 -2.8982 19 6 -1.8576 -8.1478 -3.0899 20 6 -2.3761 -8.6909 -4.2586 21 6 -2.3647 -10.0588 -4.4474 22 6 -1.8454 -10.8897 -3.4686 23 9 -1.8395 -12.2279 -3.6533 24 6 -1.3324 -10.3508 -2.3005 25 6 -1.3381 -8.9832 -2.1091 26 6 0.3752 -2.6348 -1.2700 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2256 -1.9571 1.2762 29 1 2.5843 -4.0337 0.8126 30 1 3.0518 -3.4442 -0.8146 31 1 0.9487 -5.4569 -0.0404 32 1 1.8995 -5.3390 -1.5473 33 1 -2.5983 -6.2294 -3.2415 34 1 -2.7846 -8.0437 -5.0205 35 1 -2.7643 -10.4813 -5.3575 36 1 -0.9283 -11.0006 -1.5384 37 1 -0.9383 -8.5634 -1.1979 38 1 0.8831 -2.1965 -2.1293 39 1 -0.5927 -2.1576 -1.1164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592301506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:24 Heat of formation + Delta-G solvation = -142.181039 kcal Electronic energy + Delta-G solvation = -26660.760885 eV Core-core repulsion = 22482.500370 eV Total energy + Delta-G solvation = -4178.260515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.87994 -42.23480 -40.71847 -39.35090 -38.88177 -36.43242 -35.63037 -34.24272 -32.20680 -31.97527 -30.50425 -29.68129 -27.69212 -25.80318 -24.38780 -23.97382 -22.66452 -21.56895 -21.03666 -19.32782 -19.05031 -18.63613 -18.50413 -17.69656 -17.44594 -17.15904 -16.91675 -16.57836 -16.26463 -16.04688 -15.79228 -15.32585 -14.90602 -14.73503 -14.68205 -14.59045 -14.20609 -14.00904 -13.92236 -13.56919 -13.51702 -13.32292 -12.86830 -12.72430 -12.55231 -12.37331 -12.21587 -12.16850 -12.10566 -11.42235 -11.22194 -10.79157 -10.61958 -10.34496 -10.13987 -9.69405 -9.21301 -8.25696 -6.41946 -0.22254 0.20086 0.40472 1.11868 1.42501 1.46684 1.56700 1.97790 2.33544 2.42557 2.56133 3.00622 3.14699 3.27070 3.73739 3.76386 3.86332 4.04427 4.13643 4.19447 4.25323 4.31511 4.39276 4.65542 4.73021 4.91132 4.95445 5.05813 5.07887 5.09478 5.14816 5.15248 5.20028 5.33065 5.43538 5.74637 5.80138 5.89620 6.05497 6.30720 6.51694 6.66707 6.78997 7.26727 7.34979 8.80067 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.036536 B = 0.002568 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.192374 B =10902.467614 C =11318.255179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.553 4.553 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.117 3.883 13 N -0.579 5.579 14 C 0.506 3.494 15 O -0.556 6.556 16 C 0.520 3.480 17 O -0.505 6.505 18 N -0.633 5.633 19 C 0.117 3.883 20 C -0.102 4.102 21 C -0.127 4.127 22 C 0.073 3.927 23 F -0.145 7.145 24 C -0.136 4.136 25 C -0.105 4.105 26 C 0.106 3.894 27 H 0.270 0.730 28 H 0.374 0.626 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.432 0.568 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.058 0.942 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 -17.425 -8.017 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.591 4.591 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.005 4.005 13 N -0.311 5.311 14 C 0.289 3.711 15 O -0.436 6.436 16 C 0.302 3.698 17 O -0.379 6.379 18 N -0.281 5.281 19 C 0.024 3.976 20 C -0.122 4.122 21 C -0.146 4.146 22 C 0.054 3.946 23 F -0.124 7.124 24 C -0.155 4.155 25 C -0.126 4.126 26 C -0.016 4.016 27 H 0.080 0.920 28 H 0.223 0.777 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.272 0.728 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.076 0.924 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.592 -17.982 -7.860 19.951 hybrid contribution -0.478 1.739 -0.080 1.805 sum -4.070 -16.243 -7.940 18.532 Atomic orbital electron populations 1.69817 1.07030 1.28436 1.49986 1.25790 0.95783 1.02691 0.93023 0.85414 0.79134 0.79028 0.77485 1.18963 1.20716 1.20754 1.21774 0.93981 0.90933 1.52453 0.91264 1.19868 0.87132 0.93150 0.80626 1.86126 1.51440 1.56823 1.45080 1.22718 0.97378 0.93764 1.01470 1.22212 0.86681 0.94661 0.96947 1.48691 1.23087 1.09664 1.49653 1.19867 0.82144 0.88608 0.80453 1.90731 1.38236 1.65962 1.48677 1.19935 0.82355 0.88067 0.79427 1.90736 1.37878 1.64900 1.44377 1.43000 1.23742 1.06504 1.54847 1.18003 1.02400 0.81702 0.95509 1.21070 1.00663 0.95242 0.95192 1.21229 1.00832 0.92580 0.99984 1.17920 1.02846 0.77308 0.96575 1.91489 1.94729 1.30585 1.95561 1.21183 1.01374 0.95268 0.97704 1.21179 0.99696 0.92494 0.99185 1.23096 1.01353 0.77020 1.00168 0.92044 0.77683 0.89667 0.88938 0.90881 0.89524 0.72825 0.81647 0.81506 0.83072 0.84581 0.92354 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.76 10.69 21.45 0.23 -47.53 16 2 C 0.03 1.43 5.29 84.65 0.45 1.88 16 3 Si 0.96 40.53 29.54 68.60 2.03 42.56 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -27.84 8.27 25.60 0.21 -27.62 16 8 H 0.07 3.40 7.79 -2.91 -0.02 3.37 16 9 C 0.23 10.92 0.87 -10.15 -0.01 10.91 16 10 O -0.59 -29.33 13.16 -148.98 -1.96 -31.29 16 11 C -0.12 -4.40 6.13 31.79 0.19 -4.21 16 12 C 0.12 4.13 5.49 86.73 0.48 4.61 16 13 N -0.58 -23.20 3.33 -813.50 -2.71 -25.91 16 14 C 0.51 18.94 7.91 87.23 0.69 19.63 16 15 O -0.56 -22.97 16.74 -3.29 -0.06 -23.02 16 16 C 0.52 15.76 7.70 87.23 0.67 16.43 16 17 O -0.50 -16.04 11.55 -3.33 -0.04 -16.07 16 18 N -0.63 -14.71 5.32 -304.80 -1.62 -16.34 16 19 C 0.12 2.42 6.30 38.19 0.24 2.66 16 20 C -0.10 -1.51 9.97 22.40 0.22 -1.28 16 21 C -0.13 -1.79 10.02 22.30 0.22 -1.57 16 22 C 0.07 1.30 7.30 22.39 0.16 1.47 16 23 F -0.14 -2.75 17.26 44.97 0.78 -1.97 16 24 C -0.14 -2.56 10.02 22.30 0.22 -2.33 16 25 C -0.11 -2.32 8.70 22.40 0.19 -2.12 16 26 C 0.11 4.91 5.38 86.86 0.47 5.38 16 27 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 28 H 0.37 19.40 7.57 -74.06 -0.56 18.84 16 29 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.09 3.25 8.04 -2.39 -0.02 3.23 16 31 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 32 H 0.09 2.72 7.69 -2.39 -0.02 2.70 16 33 H 0.43 8.61 8.30 -92.71 -0.77 7.84 16 34 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.14 3.40 6.22 -2.91 -0.02 3.38 16 38 H 0.06 2.79 8.03 -2.38 -0.02 2.77 16 39 H 0.06 3.21 7.33 -2.39 -0.02 3.19 16 Total: -1.00 -59.90 337.41 0.87 -59.03 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.20 Total: 36.71 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 4.42 Total: 23.83 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -4.10 Total: -89.77 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -2.05 Total: -70.39 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -59.90 0.87 -59.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592301506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.147 kcal (2) G-P(sol) polarization free energy of solvation -59.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds