Wall clock time and date at job start Fri Apr 10 2020 14:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48501 * 109.46930 * 239.99726 * 3 2 1 5 5 H 1.48498 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46921 * 119.99843 * 3 2 1 7 7 C 1.37875 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00572 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00184 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64291 * 298.31634 * 9 7 2 11 11 C 1.55439 * 110.86270 * 175.08686 * 9 7 2 12 12 C 1.54913 * 101.45288 * 206.07613 * 11 9 7 13 13 N 1.47428 * 104.92651 * 37.00698 * 12 11 9 14 14 C 1.34773 * 125.64809 * 155.79743 * 13 12 11 15 15 O 1.21356 * 119.99854 * 180.02562 * 14 13 12 16 16 C 1.49358 * 119.99838 * 0.02562 * 14 13 12 17 17 O 1.21368 * 119.99994 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99838 * 180.02562 * 16 14 13 19 19 C 1.39718 * 120.00148 * 174.73038 * 18 16 14 20 20 C 1.38967 * 120.06736 * 146.76258 * 19 18 16 21 21 C 1.38078 * 119.97753 * 179.97438 * 20 19 18 22 22 C 1.38282 * 120.09753 * 0.02765 * 21 20 19 23 23 C 1.38493 * 120.13020 * 359.97438 * 22 21 20 24 24 F 1.35098 * 119.99193 * 180.02562 * 23 22 21 25 25 C 1.38341 * 120.02242 * 359.72241 * 23 22 21 26 26 C 1.47027 * 108.70258 * 335.81733 * 13 12 11 27 27 H 0.96999 * 119.99915 * 0.02562 * 1 2 3 28 28 H 0.96706 * 113.99688 * 61.67669 * 10 9 7 29 29 H 1.09000 * 111.11639 * 88.02539 * 11 9 7 30 30 H 1.09001 * 111.01216 * 324.08415 * 11 9 7 31 31 H 1.08997 * 110.36284 * 278.11440 * 12 11 9 32 32 H 1.08996 * 110.36225 * 155.89747 * 12 11 9 33 33 H 0.96999 * 119.99980 * 354.73022 * 18 16 14 34 34 H 1.08004 * 120.00653 * 0.02562 * 20 19 18 35 35 H 1.07998 * 119.94918 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.93295 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.05028 * 180.29781 * 25 23 22 38 38 H 1.08998 * 109.88401 * 120.47828 * 26 13 12 39 39 H 1.09002 * 109.87824 * 241.49005 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4503 -2.6176 1.1793 11 6 2.2275 -3.7022 -0.1223 12 6 1.3148 -4.7738 -0.7692 13 7 0.4606 -4.0270 -1.7105 14 6 -0.1458 -4.5415 -2.7986 15 8 -0.8286 -3.8301 -3.5060 16 6 0.0227 -5.9872 -3.1338 17 8 0.7052 -6.6987 -2.4261 18 7 -0.5833 -6.5016 -4.2222 19 6 -0.3384 -7.8248 -4.5983 20 6 -1.3444 -8.5773 -5.1924 21 6 -1.1002 -9.8846 -5.5637 22 6 0.1440 -10.4468 -5.3449 23 6 1.1496 -9.7008 -4.7531 24 9 2.3644 -10.2527 -4.5411 25 6 0.9126 -8.3885 -4.3847 26 6 0.3802 -2.6279 -1.2659 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2277 -1.9333 1.2643 29 1 2.5771 -4.0269 0.8578 30 1 3.0668 -3.4589 -0.7739 31 1 0.7050 -5.2618 -0.0088 32 1 1.9147 -5.5104 -1.3037 33 1 -1.1894 -5.9532 -4.7445 34 1 -2.3166 -8.1394 -5.3643 35 1 -1.8825 -10.4691 -6.0250 36 1 0.3320 -11.4697 -5.6361 37 1 1.6979 -7.8048 -3.9275 38 1 0.7611 -1.9686 -2.0458 39 1 -0.6538 -2.3710 -1.0357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592302297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:51 Heat of formation + Delta-G solvation = -122.074817 kcal Electronic energy + Delta-G solvation = -26784.279098 eV Core-core repulsion = 22606.890455 eV Total energy + Delta-G solvation = -4177.388644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -49.07850 -41.06935 -39.44215 -38.19500 -37.35960 -35.21770 -34.21268 -32.29585 -30.94529 -30.26668 -29.99873 -28.01127 -26.12235 -24.49683 -23.24043 -22.75535 -21.64744 -20.01966 -19.60385 -18.44486 -17.42521 -17.24040 -16.86770 -16.45325 -16.27949 -15.76231 -15.74021 -15.55181 -15.30528 -14.70875 -14.42887 -14.33941 -13.90689 -13.46910 -13.14460 -13.00885 -12.98232 -12.71842 -12.49602 -12.23731 -11.99624 -11.70302 -11.57654 -11.16153 -11.09062 -10.86252 -10.75155 -10.61641 -10.55086 -10.23617 -9.44441 -9.31158 -9.07426 -8.72933 -8.54535 -8.41499 -8.14217 -6.35097 -4.43813 0.71230 0.91221 1.61910 2.31441 3.19315 3.20988 3.24979 3.27121 3.45527 3.60058 4.05198 4.22303 4.41418 4.52856 4.70847 4.77770 4.92975 5.02235 5.15671 5.40687 5.65259 5.73697 5.76375 5.78685 5.90736 5.92595 5.96175 6.04633 6.22896 6.42636 6.60191 6.66958 6.71237 6.75376 6.90835 7.12180 7.24441 7.60149 7.66236 7.84466 7.95185 8.23046 8.60012 9.22419 9.31514 10.72762 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.002780 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.966990 B =10068.056293 C =10488.969416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.096 3.904 13 N -0.571 5.571 14 C 0.509 3.491 15 O -0.533 6.533 16 C 0.512 3.488 17 O -0.491 6.491 18 N -0.651 5.651 19 C 0.181 3.819 20 C -0.155 4.155 21 C -0.070 4.070 22 C -0.173 4.173 23 C 0.121 3.879 24 F -0.136 7.136 25 C -0.160 4.160 26 C 0.100 3.900 27 H 0.271 0.729 28 H 0.382 0.618 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.426 0.574 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.075 0.925 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -16.430 -10.209 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.158 4.158 12 C -0.026 4.026 13 N -0.303 5.303 14 C 0.290 3.710 15 O -0.412 6.412 16 C 0.295 3.705 17 O -0.364 6.364 18 N -0.299 5.299 19 C 0.086 3.914 20 C -0.175 4.175 21 C -0.089 4.089 22 C -0.192 4.192 23 C 0.101 3.899 24 F -0.115 7.115 25 C -0.181 4.181 26 C -0.021 4.021 27 H 0.081 0.919 28 H 0.233 0.767 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.996 -16.897 -9.959 19.715 hybrid contribution -0.101 1.603 -0.345 1.643 sum -2.097 -15.294 -10.303 18.560 Atomic orbital electron populations 1.69676 1.06007 1.28164 1.49548 1.25082 0.95085 0.99838 0.93280 0.86431 0.79528 0.81923 0.78875 1.20004 1.21056 1.19926 1.21462 0.93740 0.89926 1.52468 0.91410 1.19574 0.86450 0.92294 0.80890 1.86134 1.51802 1.56571 1.44631 1.22867 0.97404 0.94976 1.00574 1.22688 0.92979 0.95050 0.91902 1.48733 1.45201 1.13573 1.22763 1.19239 0.82480 0.86897 0.82394 1.90752 1.39970 1.60618 1.49903 1.20719 0.79795 0.89524 0.80442 1.90743 1.36644 1.60697 1.48298 1.43244 1.47096 1.11195 1.28330 1.17428 0.92717 0.84389 0.96837 1.21013 0.98463 0.94533 1.03513 1.20779 0.96169 0.94169 0.97743 1.21139 0.93427 1.01156 1.03503 1.17436 0.81097 0.91740 0.99642 1.91517 1.41780 1.85397 1.92770 1.21121 0.97608 0.95051 1.04351 1.23307 1.02433 0.76950 0.99385 0.91858 0.76749 0.90170 0.90375 0.91114 0.89548 0.73529 0.84654 0.84428 0.84613 0.83400 0.90704 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.09 10.96 55.43 0.61 -22.48 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 3 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.68 8.13 -34.44 -0.28 -13.96 16 8 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 9 C 0.25 5.84 0.85 -89.78 -0.08 5.77 16 10 O -0.58 -14.27 13.08 -35.23 -0.46 -14.73 16 11 C -0.12 -2.39 6.26 -24.43 -0.15 -2.54 16 12 C 0.10 1.78 6.05 -2.52 -0.02 1.76 16 13 N -0.57 -11.52 3.33 -171.05 -0.57 -12.09 16 14 C 0.51 9.55 7.91 -11.63 -0.09 9.45 16 15 O -0.53 -10.91 16.81 5.49 0.09 -10.81 16 16 C 0.51 8.05 7.59 -11.63 -0.09 7.96 16 17 O -0.49 -8.26 11.47 5.48 0.06 -8.20 16 18 N -0.65 -8.07 5.32 -10.30 -0.05 -8.12 16 19 C 0.18 2.08 6.27 -83.76 -0.53 1.55 16 20 C -0.15 -1.33 9.96 -39.37 -0.39 -1.72 16 21 C -0.07 -0.52 10.04 -39.62 -0.40 -0.92 16 22 C -0.17 -1.50 10.02 -39.47 -0.40 -1.89 16 23 C 0.12 1.37 7.30 -39.45 -0.29 1.08 16 24 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 25 C -0.16 -2.01 8.63 -39.31 -0.34 -2.35 16 26 C 0.10 2.31 5.23 -3.06 -0.02 2.30 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.38 9.51 7.45 45.56 0.34 9.85 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.48 6.15 -51.93 -0.32 1.16 16 33 H 0.43 4.51 8.30 -40.82 -0.34 4.17 16 34 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.15 2.06 6.43 -52.49 -0.34 1.73 16 38 H 0.07 1.86 7.81 -51.93 -0.41 1.46 16 39 H 0.07 1.83 7.92 -51.93 -0.41 1.42 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -28.43 337.27 -6.92 -35.35 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -3.55 Total: 14.46 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -3.15 Total: 8.19 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.02 Total: -42.69 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.31 Total: -33.75 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.43 -6.92 -35.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592302297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.725 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds