Wall clock time and date at job start Fri Apr 10 2020 14:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00178 * 2 1 4 4 H 1.48497 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47437 * 300.00504 * 3 2 1 6 6 H 1.48505 * 109.46695 * 60.00279 * 3 2 1 7 7 C 1.37877 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00232 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.63826 * 298.31568 * 9 7 2 11 11 C 1.55153 * 110.87264 * 175.07042 * 9 7 2 12 12 C 1.54908 * 101.58032 * 206.06382 * 11 9 7 13 13 N 1.47425 * 104.83316 * 37.00604 * 12 11 9 14 14 C 1.34774 * 125.64706 * 156.13937 * 13 12 11 15 15 O 1.21366 * 120.00074 * 179.68961 * 14 13 12 16 16 C 1.49347 * 120.00325 * 359.69030 * 14 13 12 17 17 O 1.21379 * 119.99827 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00325 * 179.97438 * 16 14 13 19 19 C 1.39822 * 120.00187 * 175.53419 * 18 16 14 20 20 C 1.38870 * 120.08305 * 34.66258 * 19 18 16 21 21 C 1.38119 * 119.94814 * 179.72679 * 20 19 18 22 22 C 1.38304 * 120.11542 * 0.56987 * 21 20 19 23 23 C 1.38271 * 120.17205 * 359.70450 * 22 21 20 24 24 C 1.38301 * 120.04893 * 359.97438 * 23 22 21 25 25 F 1.35094 * 120.05776 * 180.02562 * 24 23 22 26 26 C 1.47018 * 108.70271 * 335.87191 * 13 12 11 27 27 H 0.96995 * 119.99457 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00099 * 61.68788 * 10 9 7 29 29 H 1.08999 * 111.00303 * 324.13567 * 11 9 7 30 30 H 1.08992 * 111.00696 * 87.94860 * 11 9 7 31 31 H 1.09006 * 110.36675 * 278.17277 * 12 11 9 32 32 H 1.08995 * 110.37037 * 155.84896 * 12 11 9 33 33 H 0.97007 * 120.00030 * 355.53254 * 18 16 14 34 34 H 1.07996 * 120.02889 * 359.97438 * 20 19 18 35 35 H 1.07995 * 119.94570 * 180.27075 * 21 20 19 36 36 H 1.08002 * 119.91448 * 179.71836 * 22 21 20 37 37 H 1.08002 * 119.97326 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.88184 * 120.47607 * 26 13 12 39 39 H 1.09005 * 109.88540 * 241.48629 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2254 -3.7001 -0.1258 12 6 1.3149 -4.7731 -0.7732 13 7 0.4607 -4.0256 -1.7139 14 6 -0.1500 -4.5405 -2.7994 15 8 -0.8374 -3.8297 -3.5032 16 6 0.0190 -5.9856 -3.1363 17 8 0.7069 -6.6963 -2.4327 18 7 -0.5921 -6.5006 -4.2215 19 6 -0.3598 -7.8292 -4.5901 20 6 -0.1562 -8.7967 -3.6150 21 6 0.0674 -10.1093 -3.9820 22 6 0.1006 -10.4598 -5.3195 23 6 -0.0959 -9.4994 -6.2947 24 6 -0.3270 -8.1842 -5.9348 25 9 -0.5195 -7.2458 -6.8874 26 6 0.3802 -2.6269 -1.2681 27 1 -0.4849 0.8400 0.0004 28 1 -0.2277 -1.9344 1.2626 29 1 3.0650 -3.4558 -0.7766 30 1 2.5751 -4.0234 0.8546 31 1 0.7050 -5.2618 -0.0133 32 1 1.9161 -5.5080 -1.3085 33 1 -1.1932 -5.9495 -4.7469 34 1 -0.1766 -8.5237 -2.5703 35 1 0.2215 -10.8624 -3.2235 36 1 0.2802 -11.4863 -5.6030 37 1 -0.0698 -9.7767 -7.3382 38 1 0.7611 -1.9670 -2.0476 39 1 -0.6538 -2.3701 -1.0378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592303849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:32 Heat of formation + Delta-G solvation = -120.893455 kcal Electronic energy + Delta-G solvation = -26946.136552 eV Core-core repulsion = 22768.799136 eV Total energy + Delta-G solvation = -4177.337416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.13238 -40.98551 -39.38988 -38.21601 -37.34422 -35.28300 -34.21137 -32.28772 -30.91799 -30.26085 -29.94382 -27.99369 -26.08513 -24.47026 -23.29321 -22.71118 -21.63011 -19.98790 -19.59234 -18.33836 -17.50508 -17.31856 -17.19725 -16.43261 -16.30842 -15.89078 -15.70453 -15.26904 -15.06129 -14.63010 -14.50787 -14.18893 -14.13411 -13.39937 -13.11031 -13.02452 -12.95413 -12.67543 -12.46512 -12.22590 -11.98250 -11.68934 -11.57899 -11.13696 -11.10775 -10.84758 -10.74821 -10.62317 -10.50076 -10.22506 -9.42581 -9.29075 -9.09924 -8.72848 -8.49444 -8.39428 -8.12043 -6.34543 -4.43001 0.71380 0.91842 1.62320 2.33569 3.17382 3.24689 3.26589 3.30101 3.45900 3.64695 3.91687 4.22995 4.42680 4.47719 4.66311 4.92922 4.93771 5.03176 5.22041 5.42128 5.66435 5.74680 5.78800 5.79328 5.87482 5.96572 6.03292 6.13239 6.23942 6.44185 6.60751 6.67849 6.72721 6.76586 6.90234 7.13526 7.25901 7.61595 7.67291 7.86405 7.96090 8.25591 8.61439 9.23091 9.32244 10.73398 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.002887 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.955606 B = 9695.240594 C =10239.348462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.096 3.904 13 N -0.571 5.571 14 C 0.509 3.491 15 O -0.532 6.532 16 C 0.515 3.485 17 O -0.495 6.495 18 N -0.649 5.649 19 C 0.117 3.883 20 C -0.095 4.095 21 C -0.110 4.110 22 C -0.108 4.108 23 C -0.137 4.137 24 C 0.074 3.926 25 F -0.135 7.135 26 C 0.100 3.900 27 H 0.270 0.730 28 H 0.382 0.618 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.425 0.575 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -18.172 -8.688 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.134 4.134 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.158 4.158 12 C -0.026 4.026 13 N -0.303 5.303 14 C 0.290 3.710 15 O -0.411 6.411 16 C 0.299 3.701 17 O -0.368 6.368 18 N -0.296 5.296 19 C 0.021 3.979 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.156 4.156 24 C 0.052 3.948 25 F -0.114 7.114 26 C -0.021 4.021 27 H 0.080 0.920 28 H 0.233 0.767 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.264 0.736 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.684 -18.583 -8.496 20.445 hybrid contribution -0.365 1.908 -0.684 2.060 sum -1.049 -16.675 -9.180 19.064 Atomic orbital electron populations 1.69696 1.06005 1.27936 1.49718 1.25090 0.95087 0.99869 0.93308 0.86324 0.80084 0.82598 0.77782 1.19545 1.20765 1.20698 1.21535 0.93795 0.89901 1.52214 0.91315 1.19528 0.86481 0.92362 0.80893 1.86129 1.51805 1.56570 1.44645 1.22813 0.97449 0.94991 1.00556 1.22690 0.92962 0.95080 0.91854 1.48718 1.45139 1.13527 1.22955 1.19224 0.82473 0.86887 0.82400 1.90763 1.39718 1.60593 1.50004 1.20669 0.79308 0.89537 0.80622 1.90697 1.36979 1.60901 1.48260 1.43091 1.46434 1.10646 1.29466 1.17812 1.03793 0.84746 0.91543 1.21329 0.98584 0.91329 1.00260 1.21164 0.99507 0.95816 0.96404 1.21043 0.99748 0.99417 0.92422 1.21002 1.02667 0.90679 1.01261 1.17549 1.06115 0.87273 0.83833 1.91509 1.92811 1.64233 1.62810 1.23302 1.02431 0.76996 0.99362 0.91980 0.76746 0.90388 0.90193 0.91148 0.89478 0.73614 0.83091 0.84786 0.84852 0.84307 0.90738 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 10.96 55.43 0.61 -22.60 16 2 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.70 8.13 -34.44 -0.28 -13.98 16 8 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 9 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 10 O -0.58 -14.26 13.08 -35.23 -0.46 -14.73 16 11 C -0.12 -2.39 6.23 -24.59 -0.15 -2.54 16 12 C 0.10 1.78 6.05 -2.53 -0.02 1.76 16 13 N -0.57 -11.68 3.33 -171.07 -0.57 -12.25 16 14 C 0.51 9.86 7.91 -11.63 -0.09 9.77 16 15 O -0.53 -11.37 16.81 5.48 0.09 -11.27 16 16 C 0.52 8.39 7.70 -11.63 -0.09 8.30 16 17 O -0.50 -8.19 11.19 5.47 0.06 -8.13 16 18 N -0.65 -9.00 5.21 -10.24 -0.05 -9.06 16 19 C 0.12 1.45 6.31 -83.65 -0.53 0.93 16 20 C -0.09 -1.08 8.70 -39.39 -0.34 -1.42 16 21 C -0.11 -0.94 10.04 -39.60 -0.40 -1.34 16 22 C -0.11 -0.81 10.04 -39.54 -0.40 -1.20 16 23 C -0.14 -1.19 10.02 -39.55 -0.40 -1.58 16 24 C 0.07 0.84 7.31 -39.23 -0.29 0.55 16 25 F -0.14 -1.65 16.96 2.25 0.04 -1.61 16 26 C 0.10 2.33 5.23 -3.07 -0.02 2.32 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.38 9.53 7.45 45.56 0.34 9.87 16 29 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.49 6.15 -51.93 -0.32 1.17 16 33 H 0.43 5.56 8.14 -40.82 -0.33 5.23 16 34 H 0.15 1.85 6.19 -52.49 -0.33 1.53 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.07 1.88 7.82 -51.93 -0.41 1.48 16 39 H 0.07 1.85 7.92 -51.93 -0.41 1.44 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -28.33 336.46 -6.93 -35.25 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -3.53 Total: 15.21 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -3.16 Total: 9.02 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.01 Total: -43.91 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.31 Total: -34.13 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.33 -6.93 -35.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592303849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.639 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds