Wall clock time and date at job start Fri Apr 10 2020 14:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00390 * 2 1 4 4 H 1.48497 * 109.47090 * 90.00055 * 3 2 1 5 5 H 1.48506 * 109.46755 * 330.00416 * 3 2 1 6 6 H 1.48498 * 109.47415 * 210.00653 * 3 2 1 7 7 C 1.37876 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00128 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00177 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.39985 * 293.53861 * 9 7 2 11 11 O 1.42092 * 106.40483 * 66.45999 * 9 7 2 12 12 N 1.65599 * 107.21924 * 180.02562 * 9 7 2 13 13 C 1.47863 * 126.93286 * 90.02202 * 12 9 7 14 14 C 1.56011 * 105.11596 * 181.89834 * 13 12 9 15 15 H 1.09002 * 116.26125 * 158.85191 * 14 13 12 16 16 C 1.57092 * 99.60022 * 32.80534 * 14 13 12 17 17 C 1.49282 * 126.92183 * 269.70870 * 12 9 7 18 18 H 1.08998 * 116.12811 * 16.88673 * 17 12 9 19 19 C 1.56015 * 104.12453 * 246.92629 * 17 12 9 20 20 N 1.49708 * 104.08555 * 287.95610 * 14 13 12 21 21 C 1.46902 * 110.99776 * 306.12289 * 20 14 13 22 22 C 1.50702 * 109.47324 * 301.86592 * 21 20 14 23 23 C 1.38236 * 120.00039 * 269.73109 * 22 21 20 24 24 C 1.38237 * 120.00189 * 179.78571 * 23 22 21 25 25 C 1.38229 * 119.99638 * 0.45817 * 24 23 22 26 26 C 1.38239 * 120.00322 * 359.77431 * 25 24 23 27 27 C 1.38227 * 120.00246 * 89.99430 * 22 21 20 28 28 H 0.96998 * 120.00161 * 179.97438 * 1 2 3 29 29 H 1.09003 * 110.31095 * 300.80939 * 13 12 9 30 30 H 1.08998 * 110.31303 * 62.98925 * 13 12 9 31 31 H 1.09001 * 112.35710 * 64.33291 * 16 14 13 32 32 H 1.08997 * 112.35785 * 191.74882 * 16 14 13 33 33 H 1.09000 * 110.32600 * 47.69555 * 19 17 12 34 34 H 1.09004 * 110.32114 * 169.89947 * 19 17 12 35 35 H 1.08994 * 109.46950 * 61.86517 * 21 20 14 36 36 H 1.08998 * 109.47312 * 181.86844 * 21 20 14 37 37 H 1.08004 * 119.99911 * 359.97438 * 23 22 21 38 38 H 1.07993 * 119.99806 * 180.24771 * 24 23 22 39 39 H 1.07998 * 120.00042 * 179.78403 * 25 24 23 40 40 H 1.07998 * 120.00030 * 180.02562 * 26 25 24 41 41 H 1.08002 * 120.00001 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 1.4466 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7002 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4518 -2.7955 1.2495 11 8 0.4508 -2.7950 -1.2499 12 7 2.2482 -3.9354 -0.0005 13 6 2.8513 -4.5878 1.1814 14 6 3.8713 -5.6163 0.6021 15 1 4.6632 -5.9424 1.2765 16 6 4.3230 -4.8399 -0.6867 17 6 2.8528 -4.5977 -1.1940 18 1 2.7453 -4.0701 -2.1417 19 6 2.3087 -6.0587 -1.1350 20 7 3.0110 -6.6962 0.0232 21 6 2.0617 -7.2051 1.0221 22 6 2.8197 -7.7274 2.2153 23 6 3.2116 -9.0523 2.2594 24 6 3.9108 -9.5303 3.3519 25 6 4.2099 -8.6857 4.4045 26 6 3.8138 -7.3620 4.3626 27 6 3.1184 -6.8830 3.2681 28 1 -0.4850 -0.8400 -0.0004 29 1 3.3657 -3.8513 1.7988 30 1 2.0851 -5.1010 1.7625 31 1 4.8414 -3.9106 -0.4505 32 1 4.8979 -5.4668 -1.3683 33 1 1.2323 -6.0552 -0.9634 34 1 2.5438 -6.5878 -2.0586 35 1 1.3989 -6.3992 1.3371 36 1 1.4718 -8.0109 0.5853 37 1 2.9742 -9.7133 1.4389 38 1 4.2204 -10.5644 3.3845 39 1 4.7531 -9.0600 5.2596 40 1 4.0478 -6.7020 5.1849 41 1 2.8089 -5.8488 3.2355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:06 Heat of formation + Delta-G solvation = -17.569306 kcal Electronic energy + Delta-G solvation = -25973.397065 eV Core-core repulsion = 22366.753296 eV Total energy + Delta-G solvation = -3606.643768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79402 -38.95544 -35.60614 -34.46747 -34.19516 -33.23848 -31.62712 -31.01288 -29.38241 -29.24361 -25.63861 -25.44651 -23.96236 -22.56912 -21.53270 -20.86505 -19.62017 -19.25071 -17.88084 -16.87235 -16.66058 -16.09068 -15.70145 -15.18359 -14.97336 -14.60851 -14.33911 -14.06228 -13.92967 -13.51893 -13.26996 -13.01422 -12.79646 -12.59455 -12.34540 -12.13482 -11.84218 -11.71120 -11.45968 -11.22403 -11.12104 -11.08016 -10.98139 -10.94556 -10.78542 -10.68997 -10.60611 -10.53543 -10.35151 -9.23011 -8.97024 -8.94225 -8.81365 -8.35800 -8.03553 -7.22470 -5.44451 1.26129 1.34914 1.95093 3.19160 3.21504 3.40337 3.61287 4.00793 4.10320 4.26546 4.49317 4.60245 4.67372 4.75849 4.81082 4.92049 4.98195 5.06121 5.18864 5.27297 5.37665 5.45293 5.48599 5.52502 5.59082 5.71371 5.82119 5.85697 5.88657 5.94292 5.99001 6.02775 6.05262 6.10234 6.15758 6.38395 6.45000 6.56711 6.69290 6.77295 6.93172 6.99349 7.14321 7.57245 8.00028 8.56934 10.14551 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.003945 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.019000 B = 7096.651032 C = 7483.528162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.089 3.911 3 Si 1.083 2.917 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.277 1.277 7 C -1.084 5.084 8 H 0.102 0.898 9 S 2.703 3.297 10 O -1.009 7.009 11 O -1.006 7.006 12 N -1.016 6.016 13 C 0.085 3.915 14 C 0.052 3.948 15 H 0.125 0.875 16 C -0.131 4.131 17 C 0.130 3.870 18 H 0.128 0.872 19 C 0.025 3.975 20 N -0.505 5.505 21 C 0.071 3.929 22 C -0.073 4.073 23 C -0.100 4.100 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.118 4.118 28 H 0.275 0.725 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -15.529 3.486 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.129 4.129 3 Si 0.906 3.094 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.203 1.203 7 C -1.219 5.219 8 H 0.121 0.879 9 S 2.807 3.193 10 O -0.999 6.999 11 O -0.997 6.997 12 N -0.852 5.852 13 C -0.042 4.042 14 C -0.057 4.057 15 H 0.143 0.857 16 C -0.171 4.171 17 C 0.023 3.977 18 H 0.146 0.854 19 C -0.104 4.104 20 N -0.229 5.229 21 C -0.057 4.057 22 C -0.074 4.074 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.136 4.136 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.545 -14.491 3.322 17.667 hybrid contribution 0.198 -0.633 0.452 0.803 sum 9.743 -15.124 3.774 18.382 Atomic orbital electron populations 1.70830 1.07197 1.31918 1.37454 1.26010 0.95122 1.03976 0.87787 0.83416 0.75051 0.73037 0.77915 1.19983 1.19681 1.20270 1.31536 1.08036 1.12503 1.69833 0.87920 1.00713 0.72297 0.73497 0.72839 1.93409 1.73140 1.87779 1.45618 1.93415 1.72922 1.87775 1.45552 1.59655 1.61090 1.53294 1.11134 1.22889 0.96633 0.95901 0.88787 1.24587 0.95115 0.89304 0.96675 0.85732 1.23986 0.96321 1.00247 0.96505 1.23622 0.91946 0.91768 0.90363 0.85400 1.23950 0.97878 0.93978 0.94599 1.65532 1.18937 1.31394 1.07060 1.21394 0.93882 0.99705 0.90671 1.19737 0.98694 0.93934 0.94997 1.21009 0.97900 0.95072 0.97888 1.21115 0.99274 0.99607 0.94221 1.21130 1.00453 0.93995 0.98658 1.21142 0.98641 0.95760 0.98201 1.21352 0.98527 1.00130 0.93634 0.91265 0.91514 0.90735 0.89555 0.89451 0.91981 0.89349 0.92405 0.89819 0.86074 0.86321 0.86397 0.86081 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.99 13.66 55.43 0.76 -25.23 16 2 C 0.09 2.55 5.46 -17.82 -0.10 2.46 16 3 Si 1.08 24.03 29.90 -169.99 -5.08 18.94 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -1.08 -30.10 9.74 30.60 0.30 -29.81 16 8 H 0.10 2.64 7.81 -52.48 -0.41 2.23 16 9 S 2.70 71.12 4.64 -107.50 -0.50 70.62 16 10 O -1.01 -29.12 17.30 -57.17 -0.99 -30.11 16 11 O -1.01 -28.65 17.31 -57.17 -0.99 -29.64 16 12 N -1.02 -20.31 3.34 -98.44 -0.33 -20.64 16 13 C 0.08 1.43 4.97 -1.68 -0.01 1.42 16 14 C 0.05 0.70 4.00 -62.31 -0.25 0.45 16 15 H 0.13 1.51 7.53 -51.93 -0.39 1.12 16 16 C -0.13 -1.75 6.84 -22.11 -0.15 -1.90 16 17 C 0.13 2.11 5.34 -62.38 -0.33 1.78 16 18 H 0.13 2.06 8.14 -51.93 -0.42 1.63 16 19 C 0.02 0.36 6.34 -0.64 0.00 0.35 16 20 N -0.51 -6.77 5.40 -216.93 -1.17 -7.94 16 21 C 0.07 0.93 4.60 -4.97 -0.02 0.91 16 22 C -0.07 -0.89 4.80 -104.63 -0.50 -1.39 16 23 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 24 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.12 -1.43 8.17 -39.59 -0.32 -1.76 16 28 H 0.28 8.72 6.52 -40.82 -0.27 8.45 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.27 3.70 -51.93 -0.19 1.08 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.98 7.66 -51.93 -0.40 0.58 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.88 5.63 -51.93 -0.29 0.59 16 36 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.13 1.61 5.51 -52.49 -0.29 1.32 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -34.81 338.35 -11.43 -46.24 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.26 Total: 6.45 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -2.97 Total: -33.80 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.74 Total: -53.81 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -1.98 Total: -59.74 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.94 kcal Atomic # 16 Polarization: 71.12 SS G_CDS: -0.50 Total: 70.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.81 -11.43 -46.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.671 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds