Wall clock time and date at job start Fri Apr 10 2020 14:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00390 * 2 1 4 4 H 1.48497 * 109.47090 * 90.00055 * 3 2 1 5 5 H 1.48506 * 109.46755 * 330.00416 * 3 2 1 6 6 H 1.48498 * 109.47415 * 210.00653 * 3 2 1 7 7 C 1.37876 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00128 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00177 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.39985 * 293.53861 * 9 7 2 11 11 O 1.42092 * 106.40483 * 66.45999 * 9 7 2 12 12 N 1.65599 * 107.21924 * 180.02562 * 9 7 2 13 13 C 1.47863 * 126.93286 * 90.02202 * 12 9 7 14 14 C 1.56011 * 105.11596 * 181.89834 * 13 12 9 15 15 H 1.09002 * 116.26125 * 158.85191 * 14 13 12 16 16 C 1.57092 * 99.60022 * 32.80534 * 14 13 12 17 17 C 1.49282 * 126.92183 * 269.70870 * 12 9 7 18 18 H 1.08998 * 116.12811 * 16.88673 * 17 12 9 19 19 C 1.56015 * 104.12453 * 246.92629 * 17 12 9 20 20 N 1.49708 * 104.08555 * 287.95610 * 14 13 12 21 21 C 1.46902 * 110.99776 * 306.12289 * 20 14 13 22 22 C 1.50702 * 109.47324 * 301.86592 * 21 20 14 23 23 C 1.38236 * 120.00039 * 269.73109 * 22 21 20 24 24 C 1.38237 * 120.00189 * 179.78571 * 23 22 21 25 25 C 1.38229 * 119.99638 * 0.45817 * 24 23 22 26 26 C 1.38239 * 120.00322 * 359.77431 * 25 24 23 27 27 C 1.38227 * 120.00246 * 89.99430 * 22 21 20 28 28 H 0.96998 * 120.00161 * 179.97438 * 1 2 3 29 29 H 1.09003 * 110.31095 * 300.80939 * 13 12 9 30 30 H 1.08998 * 110.31303 * 62.98925 * 13 12 9 31 31 H 1.09001 * 112.35710 * 64.33291 * 16 14 13 32 32 H 1.08997 * 112.35785 * 191.74882 * 16 14 13 33 33 H 1.09000 * 110.32600 * 47.69555 * 19 17 12 34 34 H 1.09004 * 110.32114 * 169.89947 * 19 17 12 35 35 H 1.08994 * 109.46950 * 61.86517 * 21 20 14 36 36 H 1.08998 * 109.47312 * 181.86844 * 21 20 14 37 37 H 1.08004 * 119.99911 * 359.97438 * 23 22 21 38 38 H 1.07993 * 119.99806 * 180.24771 * 24 23 22 39 39 H 1.07998 * 120.00042 * 179.78403 * 25 24 23 40 40 H 1.07998 * 120.00030 * 180.02562 * 26 25 24 41 41 H 1.08002 * 120.00001 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 1.4466 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7002 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4518 -2.7955 1.2495 11 8 0.4508 -2.7950 -1.2499 12 7 2.2482 -3.9354 -0.0005 13 6 2.8513 -4.5878 1.1814 14 6 3.8713 -5.6163 0.6021 15 1 4.6632 -5.9424 1.2765 16 6 4.3230 -4.8399 -0.6867 17 6 2.8528 -4.5977 -1.1940 18 1 2.7453 -4.0701 -2.1417 19 6 2.3087 -6.0587 -1.1350 20 7 3.0110 -6.6962 0.0232 21 6 2.0617 -7.2051 1.0221 22 6 2.8197 -7.7274 2.2153 23 6 3.2116 -9.0523 2.2594 24 6 3.9108 -9.5303 3.3519 25 6 4.2099 -8.6857 4.4045 26 6 3.8138 -7.3620 4.3626 27 6 3.1184 -6.8830 3.2681 28 1 -0.4850 -0.8400 -0.0004 29 1 3.3657 -3.8513 1.7988 30 1 2.0851 -5.1010 1.7625 31 1 4.8414 -3.9106 -0.4505 32 1 4.8979 -5.4668 -1.3683 33 1 1.2323 -6.0552 -0.9634 34 1 2.5438 -6.5878 -2.0586 35 1 1.3989 -6.3992 1.3371 36 1 1.4718 -8.0109 0.5853 37 1 2.9742 -9.7133 1.4389 38 1 4.2204 -10.5644 3.3845 39 1 4.7531 -9.0600 5.2596 40 1 4.0478 -6.7020 5.1849 41 1 2.8089 -5.8488 3.2355 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:05 Heat of formation + Delta-G solvation = -43.699529 kcal Electronic energy + Delta-G solvation = -25974.530156 eV Core-core repulsion = 22366.753296 eV Total energy + Delta-G solvation = -3607.776860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97071 -39.83556 -37.80921 -36.66597 -35.53315 -35.24607 -32.79602 -31.84384 -30.60900 -30.33398 -27.80982 -26.52302 -25.25360 -23.40894 -22.45716 -22.16218 -21.42851 -20.79839 -19.41748 -18.54151 -17.82311 -17.33685 -17.03418 -16.79081 -16.27907 -16.10688 -15.83963 -15.57455 -15.41091 -14.82726 -14.37231 -14.16925 -14.05586 -13.93358 -13.57872 -13.40837 -13.16262 -13.09368 -12.97047 -12.89286 -12.82530 -12.78113 -12.63568 -12.47057 -12.23719 -12.07949 -11.99661 -11.78000 -11.67002 -11.26664 -10.83263 -10.01081 -9.77933 -9.69593 -9.47788 -9.27922 -7.72256 -0.03927 0.43485 0.54311 1.40863 1.46032 1.71261 2.25767 2.44286 2.52022 2.68379 3.07240 3.30935 3.35231 3.47552 3.63312 3.84997 3.89166 3.95760 4.02437 4.15600 4.22069 4.28985 4.36815 4.40163 4.45716 4.53937 4.67417 4.72872 4.76781 4.83656 4.87050 4.99573 5.01729 5.13308 5.18304 5.19855 5.39280 5.45735 5.54418 5.66370 5.66505 5.70840 5.75316 5.89521 6.15317 6.40727 7.85810 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.003945 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.019000 B = 7096.651032 C = 7483.528162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.034 3.966 3 Si 1.124 2.876 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.248 1.248 7 C -1.100 5.100 8 H 0.120 0.880 9 S 2.710 3.290 10 O -1.047 7.047 11 O -1.038 7.038 12 N -1.017 6.017 13 C 0.076 3.924 14 C 0.069 3.931 15 H 0.147 0.853 16 C -0.116 4.116 17 C 0.110 3.890 18 H 0.125 0.875 19 C 0.027 3.973 20 N -0.492 5.492 21 C 0.073 3.927 22 C -0.086 4.086 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.136 4.136 28 H 0.254 0.746 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.039 0.961 34 H 0.119 0.881 35 H 0.028 0.972 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.910 -17.108 3.675 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.937 3.063 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.171 1.171 7 C -1.234 5.234 8 H 0.138 0.862 9 S 2.815 3.185 10 O -1.037 7.037 11 O -1.028 7.028 12 N -0.857 5.857 13 C -0.051 4.051 14 C -0.041 4.041 15 H 0.165 0.835 16 C -0.155 4.155 17 C 0.004 3.996 18 H 0.143 0.857 19 C -0.102 4.102 20 N -0.216 5.216 21 C -0.055 4.055 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.155 4.155 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.137 0.863 35 H 0.046 0.954 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.917 -16.100 3.509 20.937 hybrid contribution -0.824 -0.296 0.436 0.978 sum 12.093 -16.396 3.945 20.751 Atomic orbital electron populations 1.70985 1.08547 1.30581 1.40533 1.27910 0.95062 1.08548 0.86075 0.83043 0.75007 0.68702 0.79579 1.17822 1.18925 1.17121 1.31950 1.09164 1.13444 1.68871 0.86155 1.00061 0.72840 0.74115 0.71524 1.93345 1.74859 1.88551 1.46953 1.93356 1.74456 1.88500 1.46530 1.59141 1.60544 1.52038 1.13966 1.23184 0.97397 0.96592 0.87895 1.24665 0.94433 0.88164 0.96790 0.83535 1.23992 0.94245 1.00832 0.96409 1.24066 0.94245 0.92207 0.89075 0.85697 1.23994 0.96649 0.93202 0.96352 1.65635 1.18608 1.30575 1.06756 1.21373 0.93767 0.99023 0.91328 1.19659 0.99616 0.94801 0.94571 1.21193 0.97838 0.94420 0.98846 1.21460 0.98187 1.00901 0.93461 1.21472 0.99777 0.93363 0.99442 1.21352 0.98338 0.96769 0.97992 1.21321 0.99833 0.99589 0.94744 0.93512 0.91744 0.91477 0.89429 0.86178 0.94263 0.86261 0.95402 0.88796 0.84826 0.83649 0.83824 0.84881 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -55.74 13.66 21.45 0.29 -55.45 16 2 C 0.03 1.96 5.46 84.65 0.46 2.43 16 3 Si 1.12 47.21 29.90 68.60 2.05 49.27 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 7 C -1.10 -62.06 9.74 67.73 0.66 -61.40 16 8 H 0.12 6.14 7.81 -2.91 -0.02 6.12 16 9 S 2.71 148.78 4.64 -56.49 -0.26 148.51 16 10 O -1.05 -63.84 17.30 -128.00 -2.21 -66.06 16 11 O -1.04 -61.98 17.31 -128.00 -2.22 -64.20 16 12 N -1.02 -41.59 3.34 -465.37 -1.55 -43.14 16 13 C 0.08 2.58 4.97 87.16 0.43 3.01 16 14 C 0.07 1.73 4.00 46.85 0.19 1.91 16 15 H 0.15 3.15 7.53 -2.39 -0.02 3.13 16 16 C -0.12 -2.77 6.84 33.59 0.23 -2.54 16 17 C 0.11 3.50 5.34 47.05 0.25 3.75 16 18 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 19 C 0.03 0.75 6.34 86.80 0.55 1.30 16 20 N -0.49 -12.42 5.40 -840.24 -4.54 -16.96 16 21 C 0.07 1.90 4.60 85.56 0.39 2.29 16 22 C -0.09 -2.01 4.80 -19.87 -0.10 -2.10 16 23 C -0.10 -2.00 9.70 22.27 0.22 -1.78 16 24 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 25 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 26 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 27 C -0.14 -3.26 8.17 22.27 0.18 -3.08 16 28 H 0.25 16.97 6.52 -92.71 -0.60 16.37 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.42 3.70 -2.39 -0.01 2.41 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.27 7.66 -2.39 -0.02 1.25 16 34 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.03 0.90 5.63 -2.39 -0.01 0.89 16 36 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 37 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 41 H 0.11 2.90 5.51 -2.91 -0.02 2.88 16 Total: -1.00 -78.89 338.35 -3.09 -81.98 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 1.21 Total: 28.01 kcal Atomic # 6 Polarization: -66.11 SS G_CDS: 4.14 Total: -61.97 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -5.80 Total: -115.54 kcal Atomic # 8 Polarization: -125.82 SS G_CDS: -4.43 Total: -130.25 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.05 Total: 49.27 kcal Atomic # 16 Polarization: 148.78 SS G_CDS: -0.26 Total: 148.51 kcal Total: -78.89 -3.09 -81.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.279 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds