Wall clock time and date at job start Fri Apr 10 2020 14:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47066 * 251.93106 * 3 2 1 5 5 C 1.36899 * 119.99967 * 267.83212 * 4 3 2 6 6 H 1.08007 * 120.00028 * 204.87546 * 5 4 3 7 7 C 1.39027 * 120.00133 * 24.87116 * 5 4 3 8 8 N 1.31378 * 120.00101 * 25.48679 * 7 5 4 9 9 Si 1.86800 * 119.99708 * 205.48112 * 7 5 4 10 10 H 1.48499 * 109.47246 * 60.00390 * 9 7 5 11 11 H 1.48503 * 109.46989 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47296 * 300.00096 * 9 7 5 13 13 C 1.34773 * 119.99963 * 87.82691 * 4 3 2 14 14 O 1.21625 * 119.99930 * 5.44901 * 13 4 3 15 15 C 1.47420 * 120.00137 * 185.44672 * 13 4 3 16 16 C 1.39758 * 120.20016 * 43.03778 * 15 13 4 17 17 C 1.37776 * 119.90504 * 179.97438 * 16 15 13 18 18 C 1.38564 * 120.31264 * 0.02562 * 17 16 15 19 19 C 1.38062 * 120.40358 * 359.97438 * 18 17 16 20 20 C 1.38710 * 120.08846 * 359.97438 * 19 18 17 21 21 O 1.35647 * 120.15868 * 179.97438 * 20 19 18 22 22 C 1.35877 * 118.00302 * 265.81456 * 21 20 19 23 23 C 1.38760 * 120.05943 * 4.21698 * 22 21 20 24 24 C 1.38136 * 119.94161 * 179.75491 * 23 22 21 25 25 C 1.38267 * 120.05958 * 0.52825 * 24 23 22 26 26 C 1.38276 * 120.11777 * 359.74457 * 25 24 23 27 27 C 1.38141 * 120.05398 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46768 * 131.93668 * 3 2 1 29 29 H 1.08998 * 109.47640 * 11.93472 * 3 2 1 30 30 H 0.96993 * 119.99942 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.04474 * 0.25141 * 16 15 13 32 32 H 1.08004 * 119.84376 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.79919 * 180.02562 * 18 17 16 34 34 H 1.07994 * 119.95644 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.02936 * 0.02562 * 23 22 21 36 36 H 1.08001 * 119.97030 * 180.29905 * 24 23 22 37 37 H 1.07996 * 119.94899 * 179.72511 * 25 24 23 38 38 H 1.07997 * 119.97414 * 180.02562 * 26 25 24 39 39 H 1.07998 * 120.02734 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.4293 1.3131 5 6 3.3660 1.7512 1.5450 6 1 4.0731 2.0317 2.3117 7 6 2.7300 2.7328 0.7934 8 7 1.5617 2.4865 0.2452 9 14 3.5365 4.4019 0.5631 10 1 4.8489 4.2288 -0.1100 11 1 2.6614 5.2635 -0.2718 12 1 3.7402 5.0403 1.8882 13 6 3.2795 -0.4778 2.2929 14 8 3.1353 -1.6627 2.0593 15 6 3.6547 -0.0339 3.6476 16 6 3.0276 1.0746 4.2231 17 6 3.3826 1.4839 5.4899 18 6 4.3597 0.8018 6.1970 19 6 4.9875 -0.2949 5.6409 20 6 4.6423 -0.7220 4.3672 21 8 5.2586 -1.7990 3.8192 22 6 6.3369 -1.5800 3.0220 23 6 6.8307 -0.2935 2.8589 24 6 7.9302 -0.0742 2.0519 25 6 8.5319 -1.1337 1.3982 26 6 8.0384 -2.4159 1.5545 27 6 6.9427 -2.6415 2.3650 28 1 2.9710 0.6876 -0.7645 29 1 2.9719 -1.0046 -0.2125 30 1 1.1182 3.1711 -0.2794 31 1 2.2626 1.6069 3.6773 32 1 2.8977 2.3409 5.9335 33 1 4.6313 1.1296 7.1896 34 1 5.7484 -0.8209 6.1983 35 1 6.3586 0.5350 3.3659 36 1 8.3179 0.9262 1.9284 37 1 9.3887 -0.9597 0.7642 38 1 8.5104 -3.2418 1.0432 39 1 6.5573 -3.6430 2.4865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002774023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:22 Heat of formation + Delta-G solvation = 36.124305 kcal Electronic energy + Delta-G solvation = -27097.714596 eV Core-core repulsion = 23357.955206 eV Total energy + Delta-G solvation = -3739.759390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71037 -39.01694 -37.93325 -36.84386 -35.54577 -34.37607 -31.84694 -30.98821 -30.90811 -30.30299 -29.05868 -27.50483 -25.15448 -23.37582 -22.83684 -22.33931 -21.25244 -19.68271 -18.54826 -17.93368 -16.81822 -16.52062 -16.22235 -15.71155 -15.61605 -15.08741 -14.64750 -14.54104 -14.20849 -13.85688 -13.46311 -13.36403 -13.18293 -13.12963 -12.83863 -12.70749 -12.28324 -11.89788 -11.78547 -11.62747 -11.43597 -11.36696 -11.27403 -11.23806 -10.78441 -10.72742 -10.67302 -10.57447 -10.26271 -9.43285 -8.85928 -8.76235 -8.52705 -8.39691 -8.12773 -7.95605 -6.66685 -4.20712 1.26040 1.54142 1.59528 1.68815 2.98790 3.10953 3.11544 3.41523 3.58777 3.75847 3.98783 4.03687 4.18593 4.22763 4.67191 4.80774 5.08446 5.13250 5.15672 5.28241 5.33282 5.38797 5.49407 5.57826 5.60840 5.73856 5.80911 5.83688 6.08717 6.21825 6.24380 6.36632 6.37914 6.53967 6.58365 6.63947 6.73286 6.75081 6.79031 7.00369 7.16456 7.21693 7.38683 7.96566 8.06866 8.79996 8.94828 9.13195 9.56388 10.35735 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.005725 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.344560 B = 4889.939311 C = 5199.088067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.251 3.749 3 C 0.230 3.770 4 N -0.427 5.427 5 C -0.349 4.349 6 H 0.103 0.897 7 C 0.046 3.954 8 N -0.846 5.846 9 Si 0.915 3.085 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.503 3.497 14 O -0.577 6.577 15 C -0.094 4.094 16 C -0.052 4.052 17 C -0.134 4.134 18 C -0.103 4.103 19 C -0.142 4.142 20 C 0.111 3.889 21 O -0.245 6.245 22 C 0.138 3.862 23 C -0.189 4.189 24 C -0.080 4.080 25 C -0.162 4.162 26 C -0.087 4.087 27 C -0.146 4.146 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.278 0.722 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 -0.815 5.555 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.067 4.067 3 C 0.103 3.897 4 N -0.146 5.146 5 C -0.476 4.476 6 H 0.121 0.879 7 C -0.162 4.162 8 N -0.481 5.481 9 Si 0.741 3.259 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.293 3.707 14 O -0.461 6.461 15 C -0.098 4.098 16 C -0.071 4.071 17 C -0.152 4.152 18 C -0.122 4.122 19 C -0.161 4.161 20 C 0.067 3.933 21 O -0.156 6.156 22 C 0.095 3.905 23 C -0.208 4.208 24 C -0.098 4.098 25 C -0.180 4.180 26 C -0.105 4.105 27 C -0.165 4.165 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.406 -1.477 5.307 11.774 hybrid contribution 0.602 1.408 -0.136 1.537 sum 11.007 -0.069 5.171 12.161 Atomic orbital electron populations 1.80823 1.13557 1.12967 1.07909 1.28952 0.95116 0.89656 0.92983 1.18392 0.82041 1.01236 0.88044 1.43377 1.56183 1.07370 1.07696 1.19516 1.24630 0.79864 1.23566 0.87945 1.25309 0.93851 0.99921 0.97151 1.69835 1.10628 1.36124 1.31505 0.86167 0.79498 0.81241 0.79009 1.19439 1.20874 1.19538 1.17939 0.82989 0.85794 0.84020 1.90707 1.56772 1.16532 1.82127 1.20344 0.97976 0.95572 0.95866 1.21597 0.98304 0.93169 0.94014 1.21179 0.98477 1.00672 0.94837 1.21022 0.96484 0.94971 0.99685 1.21132 1.01885 0.97783 0.95256 1.18611 0.93933 0.88491 0.92231 1.84322 1.40665 1.30447 1.60148 1.19198 0.86280 0.93909 0.91145 1.21327 0.99662 0.95904 1.03858 1.20902 0.94701 0.98955 0.95283 1.20993 1.01707 0.92912 1.02391 1.20873 0.95347 0.97084 0.97230 1.20389 0.98030 0.98258 0.99806 0.87342 0.88656 0.91136 0.83293 0.85602 0.85714 0.85453 0.85475 0.85982 0.86285 0.85700 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.06 18.54 42.16 0.78 -11.28 16 2 C 0.25 6.03 12.94 -20.76 -0.27 5.76 16 3 C 0.23 4.98 5.20 -6.83 -0.04 4.94 16 4 N -0.43 -9.77 2.57 -119.16 -0.31 -10.08 16 5 C -0.35 -7.78 7.12 -15.00 -0.11 -7.89 16 6 H 0.10 2.22 6.36 -52.48 -0.33 1.89 16 7 C 0.05 1.03 4.73 -17.45 -0.08 0.95 16 8 N -0.85 -20.38 9.83 55.50 0.55 -19.83 16 9 Si 0.92 17.66 29.62 -169.99 -5.04 12.63 16 10 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 11 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 13 C 0.50 11.76 6.88 -12.52 -0.09 11.68 16 14 O -0.58 -14.89 15.86 -8.87 -0.14 -15.03 16 15 C -0.09 -1.92 4.93 -104.84 -0.52 -2.44 16 16 C -0.05 -0.96 7.80 -39.18 -0.31 -1.27 16 17 C -0.13 -1.96 10.02 -39.63 -0.40 -2.36 16 18 C -0.10 -1.37 10.03 -39.53 -0.40 -1.76 16 19 C -0.14 -2.13 9.90 -39.47 -0.39 -2.52 16 20 C 0.11 2.06 3.96 -38.66 -0.15 1.91 16 21 O -0.24 -4.76 8.88 -16.89 -0.15 -4.91 16 22 C 0.14 2.44 6.52 -39.20 -0.26 2.18 16 23 C -0.19 -3.12 9.18 -39.43 -0.36 -3.48 16 24 C -0.08 -1.14 10.04 -39.61 -0.40 -1.53 16 25 C -0.16 -2.08 10.04 -39.56 -0.40 -2.47 16 26 C -0.09 -1.14 10.04 -39.60 -0.40 -1.54 16 27 C -0.15 -2.28 9.99 -39.42 -0.39 -2.67 16 28 H 0.11 2.21 7.30 -51.93 -0.38 1.83 16 29 H 0.10 1.93 7.42 -51.93 -0.39 1.54 16 30 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.15 2.99 6.87 -52.49 -0.36 2.63 16 32 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 2.15 6.70 -52.49 -0.35 1.79 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -29.51 345.29 -7.95 -37.46 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.91 Total: 8.37 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -4.94 Total: -2.52 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 1.02 Total: -41.20 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.29 Total: -19.95 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.04 Total: 12.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.51 -7.95 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002774023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.587 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds