Wall clock time and date at job start Fri Apr 10 2020 14:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47066 * 251.93106 * 3 2 1 5 5 C 1.36899 * 119.99967 * 267.83212 * 4 3 2 6 6 H 1.08007 * 120.00028 * 204.87546 * 5 4 3 7 7 C 1.39027 * 120.00133 * 24.87116 * 5 4 3 8 8 N 1.31378 * 120.00101 * 25.48679 * 7 5 4 9 9 Si 1.86800 * 119.99708 * 205.48112 * 7 5 4 10 10 H 1.48499 * 109.47246 * 60.00390 * 9 7 5 11 11 H 1.48503 * 109.46989 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47296 * 300.00096 * 9 7 5 13 13 C 1.34773 * 119.99963 * 87.82691 * 4 3 2 14 14 O 1.21625 * 119.99930 * 5.44901 * 13 4 3 15 15 C 1.47420 * 120.00137 * 185.44672 * 13 4 3 16 16 C 1.39758 * 120.20016 * 43.03778 * 15 13 4 17 17 C 1.37776 * 119.90504 * 179.97438 * 16 15 13 18 18 C 1.38564 * 120.31264 * 0.02562 * 17 16 15 19 19 C 1.38062 * 120.40358 * 359.97438 * 18 17 16 20 20 C 1.38710 * 120.08846 * 359.97438 * 19 18 17 21 21 O 1.35647 * 120.15868 * 179.97438 * 20 19 18 22 22 C 1.35877 * 118.00302 * 265.81456 * 21 20 19 23 23 C 1.38760 * 120.05943 * 4.21698 * 22 21 20 24 24 C 1.38136 * 119.94161 * 179.75491 * 23 22 21 25 25 C 1.38267 * 120.05958 * 0.52825 * 24 23 22 26 26 C 1.38276 * 120.11777 * 359.74457 * 25 24 23 27 27 C 1.38141 * 120.05398 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46768 * 131.93668 * 3 2 1 29 29 H 1.08998 * 109.47640 * 11.93472 * 3 2 1 30 30 H 0.96993 * 119.99942 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.04474 * 0.25141 * 16 15 13 32 32 H 1.08004 * 119.84376 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.79919 * 180.02562 * 18 17 16 34 34 H 1.07994 * 119.95644 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.02936 * 0.02562 * 23 22 21 36 36 H 1.08001 * 119.97030 * 180.29905 * 24 23 22 37 37 H 1.07996 * 119.94899 * 179.72511 * 25 24 23 38 38 H 1.07997 * 119.97414 * 180.02562 * 26 25 24 39 39 H 1.07998 * 120.02734 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.4293 1.3131 5 6 3.3660 1.7512 1.5450 6 1 4.0731 2.0317 2.3117 7 6 2.7300 2.7328 0.7934 8 7 1.5617 2.4865 0.2452 9 14 3.5365 4.4019 0.5631 10 1 4.8489 4.2288 -0.1100 11 1 2.6614 5.2635 -0.2718 12 1 3.7402 5.0403 1.8882 13 6 3.2795 -0.4778 2.2929 14 8 3.1353 -1.6627 2.0593 15 6 3.6547 -0.0339 3.6476 16 6 3.0276 1.0746 4.2231 17 6 3.3826 1.4839 5.4899 18 6 4.3597 0.8018 6.1970 19 6 4.9875 -0.2949 5.6409 20 6 4.6423 -0.7220 4.3672 21 8 5.2586 -1.7990 3.8192 22 6 6.3369 -1.5800 3.0220 23 6 6.8307 -0.2935 2.8589 24 6 7.9302 -0.0742 2.0519 25 6 8.5319 -1.1337 1.3982 26 6 8.0384 -2.4159 1.5545 27 6 6.9427 -2.6415 2.3650 28 1 2.9710 0.6876 -0.7645 29 1 2.9719 -1.0046 -0.2125 30 1 1.1182 3.1711 -0.2794 31 1 2.2626 1.6069 3.6773 32 1 2.8977 2.3409 5.9335 33 1 4.6313 1.1296 7.1896 34 1 5.7484 -0.8209 6.1983 35 1 6.3586 0.5350 3.3659 36 1 8.3179 0.9262 1.9284 37 1 9.3887 -0.9597 0.7642 38 1 8.5104 -3.2418 1.0432 39 1 6.5573 -3.6430 2.4865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002774023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:21 Heat of formation + Delta-G solvation = 21.985578 kcal Electronic energy + Delta-G solvation = -27098.327697 eV Core-core repulsion = 23357.955206 eV Total energy + Delta-G solvation = -3740.372491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.04363 -40.54713 -39.27791 -38.07957 -37.41605 -36.26654 -33.61583 -32.37866 -32.06123 -31.46233 -30.27495 -29.20880 -26.89056 -24.67706 -24.15499 -23.46671 -22.51185 -21.28325 -20.09041 -19.31822 -18.47428 -18.02551 -17.69332 -17.09017 -16.76655 -16.56410 -16.31655 -15.98239 -15.38137 -15.22261 -14.98723 -14.71444 -14.59304 -14.41462 -14.34636 -14.27664 -13.94203 -13.45854 -13.23469 -13.13978 -12.96709 -12.87031 -12.65047 -12.48823 -12.41409 -12.26340 -12.04747 -11.94528 -11.81829 -11.16777 -10.59214 -9.98936 -9.89643 -9.81238 -9.67461 -9.13906 -8.40779 -5.99737 -0.05139 0.28711 0.46737 0.54691 1.43898 1.52888 1.60440 1.81340 2.01667 2.24387 2.28628 2.36313 2.82950 2.91626 2.94650 3.12661 3.58979 3.95860 3.99670 4.03818 4.06405 4.20954 4.32655 4.37622 4.44404 4.52644 4.55587 4.58623 4.63114 4.67478 4.93585 5.05402 5.13774 5.34687 5.41956 5.42688 5.46269 5.52068 5.54859 5.63253 5.64305 5.83143 6.05359 6.30280 6.70137 7.01766 7.04048 7.36590 7.80156 8.61658 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.005725 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.344560 B = 4889.939311 C = 5199.088067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.261 3.739 3 C 0.229 3.771 4 N -0.435 5.435 5 C -0.348 4.348 6 H 0.107 0.893 7 C 0.014 3.986 8 N -0.880 5.880 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.292 1.292 12 H -0.263 1.263 13 C 0.496 3.504 14 O -0.615 6.615 15 C -0.131 4.131 16 C -0.067 4.067 17 C -0.125 4.125 18 C -0.079 4.079 19 C -0.139 4.139 20 C 0.099 3.901 21 O -0.269 6.269 22 C 0.108 3.892 23 C -0.204 4.204 24 C -0.086 4.086 25 C -0.155 4.155 26 C -0.082 4.082 27 C -0.166 4.166 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.273 0.727 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.116 0.884 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.247 0.568 6.898 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.057 4.057 3 C 0.102 3.898 4 N -0.153 5.153 5 C -0.475 4.475 6 H 0.125 0.875 7 C -0.191 4.191 8 N -0.516 5.516 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.218 1.218 12 H -0.187 1.187 13 C 0.287 3.713 14 O -0.502 6.502 15 C -0.134 4.134 16 C -0.086 4.086 17 C -0.143 4.143 18 C -0.096 4.096 19 C -0.157 4.157 20 C 0.056 3.944 21 O -0.182 6.182 22 C 0.065 3.935 23 C -0.222 4.222 24 C -0.104 4.104 25 C -0.173 4.173 26 C -0.099 4.099 27 C -0.185 4.185 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.176 0.824 33 H 0.192 0.808 34 H 0.170 0.830 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.273 -0.083 6.662 14.851 hybrid contribution -0.213 0.923 -0.483 1.063 sum 13.060 0.839 6.178 14.472 Atomic orbital electron populations 1.80796 1.14555 1.14265 1.09026 1.29422 0.95631 0.88614 0.91988 1.18567 0.80719 1.02157 0.88321 1.43577 1.55990 1.07771 1.07922 1.19701 1.24354 0.79692 1.23706 0.87503 1.26007 0.93795 1.02759 0.96568 1.69929 1.11967 1.36985 1.32707 0.85188 0.78424 0.77207 0.78930 1.18685 1.21784 1.18732 1.18522 0.82145 0.85338 0.85248 1.90649 1.58377 1.18029 1.83107 1.20249 1.00531 0.97762 0.94867 1.21439 0.98376 0.92971 0.95810 1.21517 0.98332 1.01270 0.93158 1.21543 0.94110 0.93010 1.00977 1.21482 1.02206 0.98209 0.93824 1.18910 0.93821 0.88351 0.93358 1.84254 1.41626 1.31323 1.60974 1.19533 0.86547 0.95107 0.92291 1.21346 1.00773 0.95124 1.05001 1.21253 0.93928 1.00630 0.94577 1.21435 1.02060 0.92195 1.01629 1.21295 0.94114 0.98553 0.95989 1.20671 0.99202 0.97981 1.00631 0.86101 0.87613 0.91629 0.85959 0.82384 0.80820 0.83039 0.86575 0.83799 0.82756 0.82370 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.72 18.54 20.01 0.37 -26.34 16 2 C 0.26 12.98 12.94 89.44 1.16 14.13 16 3 C 0.23 10.25 5.20 84.57 0.44 10.69 16 4 N -0.43 -20.52 2.57 -649.16 -1.67 -22.19 16 5 C -0.35 -15.74 7.12 84.09 0.60 -15.14 16 6 H 0.11 4.68 6.36 -2.91 -0.02 4.66 16 7 C 0.01 0.60 4.73 84.95 0.40 1.01 16 8 N -0.88 -43.19 9.83 21.68 0.21 -42.98 16 9 Si 0.98 35.81 29.62 68.60 2.03 37.84 16 10 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 11 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 C 0.50 24.22 6.88 86.66 0.60 24.81 16 14 O -0.61 -33.38 15.86 9.40 0.15 -33.23 16 15 C -0.13 -5.49 4.93 -20.01 -0.10 -5.59 16 16 C -0.07 -2.48 7.80 22.53 0.18 -2.31 16 17 C -0.13 -3.35 10.02 22.24 0.22 -3.13 16 18 C -0.08 -1.78 10.03 22.31 0.22 -1.56 16 19 C -0.14 -3.88 9.90 22.34 0.22 -3.66 16 20 C 0.10 3.71 3.96 22.87 0.09 3.80 16 21 O -0.27 -10.86 8.88 -19.29 -0.17 -11.03 16 22 C 0.11 3.87 6.52 22.52 0.15 4.02 16 23 C -0.20 -6.68 9.18 22.37 0.21 -6.48 16 24 C -0.09 -2.27 10.04 22.25 0.22 -2.05 16 25 C -0.16 -3.53 10.04 22.29 0.22 -3.30 16 26 C -0.08 -1.97 10.04 22.26 0.22 -1.75 16 27 C -0.17 -5.19 9.99 22.37 0.22 -4.97 16 28 H 0.12 5.04 7.30 -2.39 -0.02 5.02 16 29 H 0.11 4.46 7.42 -2.39 -0.02 4.44 16 30 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.12 5.11 6.87 -2.91 -0.02 5.09 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.12 3.96 6.70 -2.91 -0.02 3.94 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -67.76 345.29 7.29 -60.47 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 1.09 Total: 28.94 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.28 Total: 8.53 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -1.08 Total: -91.51 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.02 Total: -44.27 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -67.76 7.29 -60.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002774023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.451 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds