Wall clock time and date at job start Fri Apr 10 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48506 * 109.46807 * 269.99830 * 3 2 1 5 5 H 1.48502 * 109.47297 * 29.99749 * 3 2 1 6 6 H 1.48500 * 109.46973 * 150.00125 * 3 2 1 7 7 C 1.38808 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99924 * 182.59444 * 7 2 1 9 9 N 1.36932 * 119.99994 * 2.59777 * 7 2 1 10 10 C 1.46965 * 120.59282 * 219.23015 * 9 7 2 11 11 C 1.53377 * 108.63602 * 235.24389 * 10 9 7 12 12 N 1.46965 * 108.63356 * 310.57906 * 11 10 9 13 13 C 1.34777 * 120.59097 * 235.19967 * 12 11 10 14 14 O 1.21582 * 120.00034 * 0.59422 * 13 12 11 15 15 C 1.47607 * 120.00075 * 180.86639 * 13 12 11 16 16 C 1.39566 * 120.50152 * 31.19410 * 15 13 12 17 17 N 1.31633 * 120.63024 * 180.02562 * 16 15 13 18 18 C 1.32434 * 121.79934 * 359.96983 * 17 16 15 19 19 O 1.35497 * 119.52468 * 180.02562 * 18 17 16 20 20 C 1.39128 * 120.94950 * 359.97438 * 18 17 16 21 21 N 1.48023 * 120.36850 * 180.02562 * 20 18 17 22 22 O 1.21791 * 120.00031 * 179.97438 * 21 20 18 23 23 O 1.21798 * 119.99653 * 0.02562 * 21 20 18 24 24 C 1.37991 * 119.26433 * 359.80703 * 20 18 17 25 25 C 1.46957 * 118.81310 * 55.47602 * 12 11 10 26 26 C 1.46967 * 120.59748 * 39.24651 * 9 7 2 27 27 H 0.97003 * 120.00409 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.61213 * 115.50325 * 10 9 7 29 29 H 1.08997 * 109.75264 * 355.07202 * 10 9 7 30 30 H 1.08997 * 109.61058 * 190.82973 * 11 10 9 31 31 H 1.09001 * 109.74550 * 70.40434 * 11 10 9 32 32 H 1.08001 * 119.68285 * 359.97438 * 16 15 13 33 33 H 0.96695 * 114.00460 * 90.00453 * 19 18 17 34 34 H 1.08000 * 120.82404 * 180.21050 * 24 20 18 35 35 H 1.08994 * 109.61489 * 64.26594 * 25 12 11 36 36 H 1.09009 * 109.60990 * 184.77893 * 25 12 11 37 37 H 1.08997 * 109.61437 * 244.50009 * 26 9 7 38 38 H 1.08997 * 109.60913 * 5.01234 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0894 -1.2025 0.0429 9 7 1.3267 -2.3874 -0.0527 10 6 1.7701 -3.5428 0.7399 11 6 1.9797 -4.7334 -0.2040 12 7 0.7897 -4.8730 -1.0551 13 6 0.1174 -6.0399 -1.1081 14 8 0.4877 -6.9857 -0.4399 15 6 -1.0649 -6.1714 -1.9820 16 6 -1.1494 -5.4488 -3.1730 17 7 -2.2028 -5.5639 -3.9540 18 6 -3.2151 -6.3608 -3.6474 19 8 -4.2767 -6.4443 -4.4853 20 6 -3.2039 -7.1142 -2.4778 21 7 -4.3421 -8.0012 -2.1481 22 8 -4.3250 -8.6582 -1.1227 23 8 -5.2953 -8.0748 -2.9027 24 6 -2.1178 -7.0289 -1.6309 25 6 0.3496 -3.7193 -1.8520 26 6 0.1366 -2.5271 -0.9037 27 1 -0.4851 0.8400 0.0004 28 1 1.0098 -3.7923 1.4800 29 1 2.7072 -3.3061 1.2437 30 1 2.1205 -5.6429 0.3800 31 1 2.8568 -4.5593 -0.8272 32 1 -0.3432 -4.7884 -3.4562 33 1 -4.1927 -7.1326 -5.1592 34 1 -2.0811 -7.6051 -0.7182 35 1 1.1127 -3.4716 -2.5897 36 1 -0.5865 -3.9589 -2.3566 37 1 -0.7400 -2.7042 -0.2807 38 1 -0.0043 -1.6176 -1.4877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275113582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:24 Heat of formation + Delta-G solvation = 22.813478 kcal Electronic energy + Delta-G solvation = -27309.541429 eV Core-core repulsion = 23158.355575 eV Total energy + Delta-G solvation = -4151.185854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59790 -41.33662 -39.75343 -37.81059 -37.10497 -36.66753 -34.29505 -33.65729 -32.38663 -31.07376 -30.31385 -27.34527 -27.20597 -25.00123 -24.28000 -23.35156 -22.94492 -21.25857 -20.01735 -19.55587 -19.13633 -18.93150 -17.89976 -17.86829 -17.04224 -16.53647 -16.13514 -15.82804 -15.47436 -14.95675 -14.67973 -14.13418 -13.97444 -13.65713 -13.59080 -13.49579 -13.29510 -12.69494 -12.54371 -11.86314 -11.76599 -11.68819 -11.44403 -11.33403 -11.03960 -10.99077 -10.95263 -10.70769 -10.56116 -10.41092 -10.28088 -10.06458 -9.97861 -9.64068 -8.72332 -8.60432 -6.74599 -6.02526 -3.60987 -0.70042 -0.00444 0.88923 0.98297 2.27902 2.64572 2.80753 3.08008 3.23642 3.31856 3.32633 3.63876 3.84941 3.97573 4.25983 4.29514 4.35861 4.77019 4.96993 5.13021 5.18032 5.31824 5.46444 5.56918 5.68439 5.77522 5.95000 6.02097 6.07445 6.15839 6.59421 6.63294 6.68102 6.90356 6.94312 7.23201 7.38906 7.44861 7.60609 8.02426 8.27740 8.97764 9.54705 10.16975 11.05205 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.003285 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.371874 B = 8521.255235 C = 9240.142104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.017 3.983 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.267 4.267 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.130 3.870 11 C 0.096 3.904 12 N -0.581 5.581 13 C 0.558 3.442 14 O -0.539 6.539 15 C -0.184 4.184 16 C 0.195 3.805 17 N -0.489 5.489 18 C 0.407 3.593 19 O -0.454 6.454 20 C -0.129 4.129 21 N 0.037 4.963 22 O -0.161 6.161 23 O -0.134 6.134 24 C 0.056 3.944 25 C 0.047 3.953 26 C 0.162 3.838 27 H 0.258 0.742 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.207 0.793 33 H 0.418 0.582 34 H 0.178 0.822 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -12.257 -8.635 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.184 4.184 3 Si 0.736 3.264 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.312 5.312 13 C 0.344 3.656 14 O -0.418 6.418 15 C -0.190 4.190 16 C 0.039 3.961 17 N -0.208 5.208 18 C 0.225 3.775 19 O -0.263 6.263 20 C -0.217 4.217 21 N 0.558 4.442 22 O -0.374 6.374 23 O -0.354 6.354 24 C 0.029 3.971 25 C -0.076 4.076 26 C 0.035 3.965 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.223 0.777 33 H 0.280 0.720 34 H 0.196 0.804 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.442 -11.245 -8.853 14.519 hybrid contribution 0.124 0.058 0.528 0.545 sum -2.318 -11.187 -8.325 14.136 Atomic orbital electron populations 1.69892 1.05512 1.26128 1.52772 1.25428 0.95488 0.98752 0.98709 0.86246 0.79213 0.83132 0.77852 1.21137 1.21453 1.20172 1.19116 0.90091 0.82817 1.47644 0.91714 1.43849 1.31093 1.08936 1.47269 1.21352 0.99032 0.87164 0.92099 1.22376 0.85488 1.00989 0.93916 1.47981 1.28472 1.10517 1.44205 1.17590 0.82356 0.83502 0.82146 1.90802 1.68018 1.38312 1.44702 1.21097 0.97952 1.01203 0.98771 1.24152 0.94479 0.90199 0.87303 1.67830 1.00872 1.18744 1.33398 1.19105 0.85428 0.86186 0.86776 1.84762 1.34035 1.60715 1.46805 1.22342 0.92811 1.03851 1.02699 1.43160 1.01146 0.99634 1.00251 1.94589 1.86045 1.42106 1.14665 1.94568 1.24162 1.69957 1.46734 1.21504 0.87122 0.90866 0.97588 1.23693 0.99154 0.88462 0.96310 1.21246 0.89343 0.94275 0.91637 0.93168 0.95667 0.91043 0.89520 0.91202 0.77709 0.71966 0.80447 0.90244 0.90071 0.95545 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 11.19 55.49 0.62 -23.49 16 2 C 0.02 0.42 5.18 -17.43 -0.09 0.33 16 3 Si 0.91 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.27 -6.63 9.50 -15.06 -0.14 -6.77 16 8 H 0.07 1.58 7.83 -52.49 -0.41 1.17 16 9 N -0.59 -13.15 2.93 -171.76 -0.50 -13.66 16 10 C 0.13 2.47 6.67 -3.59 -0.02 2.45 16 11 C 0.10 1.51 6.59 -3.59 -0.02 1.49 16 12 N -0.58 -8.91 2.94 -173.41 -0.51 -9.42 16 13 C 0.56 8.35 7.47 -12.44 -0.09 8.26 16 14 O -0.54 -9.42 16.20 5.29 0.09 -9.33 16 15 C -0.18 -2.27 5.54 -104.82 -0.58 -2.85 16 16 C 0.20 2.11 8.62 -17.14 -0.15 1.96 16 17 N -0.49 -5.48 10.37 -13.45 -0.14 -5.62 16 18 C 0.41 4.50 7.73 -16.96 -0.13 4.37 16 19 O -0.45 -4.28 11.57 -40.26 -0.47 -4.74 16 20 C -0.13 -1.54 6.88 -79.70 -0.55 -2.09 16 21 N 0.04 0.49 4.45 34.08 0.15 0.64 16 22 O -0.16 -2.26 18.51 -29.46 -0.55 -2.81 16 23 O -0.13 -1.74 17.26 -36.48 -0.63 -2.37 16 24 C 0.06 0.67 9.22 -38.92 -0.36 0.31 16 25 C 0.05 0.71 5.07 -3.37 -0.02 0.69 16 26 C 0.16 3.32 5.42 -3.36 -0.02 3.30 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.30 7.94 -51.93 -0.41 0.88 16 30 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.21 1.86 5.29 -52.49 -0.28 1.59 16 33 H 0.42 1.77 9.06 45.56 0.41 2.18 16 34 H 0.18 2.08 7.63 -52.49 -0.40 1.68 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.02 3.56 -53.03 -0.19 0.83 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 2.27 6.38 -51.93 -0.33 1.94 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -30.80 325.76 -7.02 -37.83 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.80 Total: 1.58 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.18 Total: 11.44 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.38 Total: -51.55 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.56 Total: -19.25 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.80 -7.02 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275113582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.639 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds