Wall clock time and date at job start Fri Apr 10 2020 14:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48506 * 109.46807 * 269.99830 * 3 2 1 5 5 H 1.48502 * 109.47297 * 29.99749 * 3 2 1 6 6 H 1.48500 * 109.46973 * 150.00125 * 3 2 1 7 7 C 1.38808 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99924 * 182.59444 * 7 2 1 9 9 N 1.36932 * 119.99994 * 2.59777 * 7 2 1 10 10 C 1.46965 * 120.59282 * 219.23015 * 9 7 2 11 11 C 1.53377 * 108.63602 * 235.24389 * 10 9 7 12 12 N 1.46965 * 108.63356 * 310.57906 * 11 10 9 13 13 C 1.34777 * 120.59097 * 235.19967 * 12 11 10 14 14 O 1.21582 * 120.00034 * 0.59422 * 13 12 11 15 15 C 1.47607 * 120.00075 * 180.86639 * 13 12 11 16 16 C 1.39566 * 120.50152 * 31.19410 * 15 13 12 17 17 N 1.31633 * 120.63024 * 180.02562 * 16 15 13 18 18 C 1.32434 * 121.79934 * 359.96983 * 17 16 15 19 19 O 1.35497 * 119.52468 * 180.02562 * 18 17 16 20 20 C 1.39128 * 120.94950 * 359.97438 * 18 17 16 21 21 N 1.48023 * 120.36850 * 180.02562 * 20 18 17 22 22 O 1.21791 * 120.00031 * 179.97438 * 21 20 18 23 23 O 1.21798 * 119.99653 * 0.02562 * 21 20 18 24 24 C 1.37991 * 119.26433 * 359.80703 * 20 18 17 25 25 C 1.46957 * 118.81310 * 55.47602 * 12 11 10 26 26 C 1.46967 * 120.59748 * 39.24651 * 9 7 2 27 27 H 0.97003 * 120.00409 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.61213 * 115.50325 * 10 9 7 29 29 H 1.08997 * 109.75264 * 355.07202 * 10 9 7 30 30 H 1.08997 * 109.61058 * 190.82973 * 11 10 9 31 31 H 1.09001 * 109.74550 * 70.40434 * 11 10 9 32 32 H 1.08001 * 119.68285 * 359.97438 * 16 15 13 33 33 H 0.96695 * 114.00460 * 90.00453 * 19 18 17 34 34 H 1.08000 * 120.82404 * 180.21050 * 24 20 18 35 35 H 1.08994 * 109.61489 * 64.26594 * 25 12 11 36 36 H 1.09009 * 109.60990 * 184.77893 * 25 12 11 37 37 H 1.08997 * 109.61437 * 244.50009 * 26 9 7 38 38 H 1.08997 * 109.60913 * 5.01234 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0894 -1.2025 0.0429 9 7 1.3267 -2.3874 -0.0527 10 6 1.7701 -3.5428 0.7399 11 6 1.9797 -4.7334 -0.2040 12 7 0.7897 -4.8730 -1.0551 13 6 0.1174 -6.0399 -1.1081 14 8 0.4877 -6.9857 -0.4399 15 6 -1.0649 -6.1714 -1.9820 16 6 -1.1494 -5.4488 -3.1730 17 7 -2.2028 -5.5639 -3.9540 18 6 -3.2151 -6.3608 -3.6474 19 8 -4.2767 -6.4443 -4.4853 20 6 -3.2039 -7.1142 -2.4778 21 7 -4.3421 -8.0012 -2.1481 22 8 -4.3250 -8.6582 -1.1227 23 8 -5.2953 -8.0748 -2.9027 24 6 -2.1178 -7.0289 -1.6309 25 6 0.3496 -3.7193 -1.8520 26 6 0.1366 -2.5271 -0.9037 27 1 -0.4851 0.8400 0.0004 28 1 1.0098 -3.7923 1.4800 29 1 2.7072 -3.3061 1.2437 30 1 2.1205 -5.6429 0.3800 31 1 2.8568 -4.5593 -0.8272 32 1 -0.3432 -4.7884 -3.4562 33 1 -4.1927 -7.1326 -5.1592 34 1 -2.0811 -7.6051 -0.7182 35 1 1.1127 -3.4716 -2.5897 36 1 -0.5865 -3.9589 -2.3566 37 1 -0.7400 -2.7042 -0.2807 38 1 -0.0043 -1.6176 -1.4877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275113582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:23 Heat of formation + Delta-G solvation = 0.459520 kcal Electronic energy + Delta-G solvation = -27310.510769 eV Core-core repulsion = 23158.355575 eV Total energy + Delta-G solvation = -4152.155194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.58402 -42.35406 -40.88198 -38.75501 -38.48002 -37.67629 -35.82394 -34.62825 -33.73622 -32.58149 -31.65080 -28.87874 -28.20885 -26.29252 -25.49050 -24.61559 -24.27142 -22.58835 -21.21142 -20.45672 -20.25610 -20.04488 -18.99485 -18.86018 -18.50684 -17.51056 -17.29446 -17.13667 -16.77709 -16.54043 -15.82005 -15.48964 -15.23345 -15.15999 -14.97837 -14.69294 -14.45878 -14.05235 -13.38482 -13.31391 -13.03551 -12.80460 -12.77137 -12.73444 -12.54517 -12.38461 -12.26147 -12.16599 -12.03513 -11.88211 -11.73991 -11.41332 -11.11544 -10.72648 -10.56143 -9.96911 -8.54480 -7.91628 -5.53352 -1.64156 -0.95410 -0.09780 0.01139 1.25119 1.48386 1.51203 1.58599 1.65450 1.78633 2.03603 2.48305 2.70643 2.84701 3.05274 3.27043 3.29399 3.46420 3.55332 3.86047 4.05684 4.17398 4.21265 4.33350 4.42709 4.47675 4.60629 4.69561 4.77961 5.02683 5.05727 5.18909 5.41635 5.57099 5.64255 5.84763 6.20340 6.24749 6.34365 6.40916 6.81408 7.12593 7.74183 8.32535 9.12672 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.003285 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.371874 B = 8521.255235 C = 9240.142104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.034 4.034 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.270 4.270 8 H 0.069 0.931 9 N -0.607 5.607 10 C 0.130 3.870 11 C 0.107 3.893 12 N -0.585 5.585 13 C 0.565 3.435 14 O -0.565 6.565 15 C -0.195 4.195 16 C 0.210 3.790 17 N -0.491 5.491 18 C 0.423 3.577 19 O -0.457 6.457 20 C -0.136 4.136 21 N 0.038 4.962 22 O -0.194 6.194 23 O -0.121 6.121 24 C 0.061 3.939 25 C 0.066 3.934 26 C 0.166 3.834 27 H 0.252 0.748 28 H 0.006 0.994 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.441 0.559 34 H 0.176 0.824 35 H 0.102 0.898 36 H 0.108 0.892 37 H -0.005 1.005 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -12.682 -10.479 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.231 4.231 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.400 4.400 8 H 0.086 0.914 9 N -0.331 5.331 10 C 0.004 3.996 11 C -0.017 4.017 12 N -0.316 5.316 13 C 0.352 3.648 14 O -0.446 6.446 15 C -0.201 4.201 16 C 0.054 3.946 17 N -0.211 5.211 18 C 0.241 3.759 19 O -0.271 6.271 20 C -0.224 4.224 21 N 0.557 4.443 22 O -0.399 6.399 23 O -0.346 6.346 24 C 0.034 3.966 25 C -0.058 4.058 26 C 0.039 3.961 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.243 0.757 33 H 0.308 0.692 34 H 0.193 0.807 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.013 0.987 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.840 -11.740 -10.671 15.971 hybrid contribution -0.131 0.151 1.054 1.072 sum -1.971 -11.589 -9.617 15.188 Atomic orbital electron populations 1.70054 1.06784 1.26190 1.54609 1.26090 0.96108 1.01593 0.99262 0.85302 0.78062 0.79432 0.77777 1.20612 1.22572 1.19409 1.19426 0.90521 0.83844 1.46204 0.91379 1.44105 1.31230 1.09235 1.48494 1.21411 0.98502 0.87367 0.92351 1.22185 0.86320 0.99435 0.93712 1.47989 1.28487 1.10773 1.44318 1.17801 0.82420 0.82809 0.81765 1.90792 1.68750 1.39143 1.45908 1.20830 0.97279 1.02629 0.99332 1.24382 0.94649 0.89376 0.86218 1.67969 1.00978 1.18915 1.33245 1.19169 0.85288 0.85009 0.86454 1.84716 1.33309 1.61785 1.47302 1.22325 0.92443 1.04352 1.03270 1.43292 1.01366 0.99603 1.00038 1.94600 1.86565 1.43389 1.15366 1.94543 1.24321 1.69421 1.46357 1.21497 0.87130 0.90423 0.97525 1.23500 1.01348 0.85911 0.94991 1.21046 0.87782 0.95639 0.91630 0.93861 0.97547 0.90528 0.88923 0.89546 0.75721 0.69188 0.80677 0.88047 0.87434 0.98655 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.93 11.19 21.65 0.24 -50.69 16 2 C -0.03 -1.72 5.18 84.86 0.44 -1.28 16 3 Si 0.97 41.32 29.55 68.60 2.03 43.35 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.27 -13.33 9.50 84.03 0.80 -12.54 16 8 H 0.07 3.26 7.83 -2.91 -0.02 3.24 16 9 N -0.61 -27.08 2.93 -697.34 -2.04 -29.13 16 10 C 0.13 4.88 6.67 86.42 0.58 5.46 16 11 C 0.11 3.21 6.59 86.42 0.57 3.78 16 12 N -0.59 -16.91 2.94 -820.82 -2.41 -19.32 16 13 C 0.56 15.99 7.47 86.72 0.65 16.63 16 14 O -0.57 -19.13 16.20 -3.97 -0.06 -19.19 16 15 C -0.19 -4.43 5.54 -20.00 -0.11 -4.54 16 16 C 0.21 3.92 8.62 85.04 0.73 4.65 16 17 N -0.49 -9.52 10.37 -309.35 -3.21 -12.73 16 18 C 0.42 8.25 7.73 84.82 0.66 8.91 16 19 O -0.46 -7.28 11.57 -66.87 -0.77 -8.06 16 20 C -0.14 -3.01 6.88 36.53 0.25 -2.76 16 21 N 0.04 0.96 4.45 -46.09 -0.21 0.76 16 22 O -0.19 -5.41 18.51 18.90 0.35 -5.06 16 23 O -0.12 -2.93 17.26 25.60 0.44 -2.49 16 24 C 0.06 1.38 9.22 22.70 0.21 1.59 16 25 C 0.07 1.82 5.07 86.57 0.44 2.26 16 26 C 0.17 6.80 5.42 86.57 0.47 7.27 16 27 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 2.74 7.94 -2.39 -0.02 2.72 16 30 H 0.09 2.71 6.99 -2.39 -0.02 2.70 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.23 3.22 5.29 -2.91 -0.02 3.21 16 33 H 0.44 2.31 9.06 -74.06 -0.67 1.63 16 34 H 0.18 4.05 7.63 -2.91 -0.02 4.03 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.11 2.42 3.56 -3.42 -0.01 2.41 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.07 3.41 6.38 -2.39 -0.02 3.40 16 Total: -1.00 -66.55 325.76 0.51 -66.04 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.48 Total: 7.08 kcal Atomic # 6 Polarization: 23.76 SS G_CDS: 5.68 Total: 29.44 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -7.63 Total: -111.11 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.05 Total: -34.79 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -66.55 0.51 -66.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275113582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.499 kcal (2) G-P(sol) polarization free energy of solvation -66.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds