Wall clock time and date at job start Fri Apr 10 2020 14:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99950 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99943 * 3 2 1 7 7 C 1.38946 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00006 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00384 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00039 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.46808 * 180.02562 * 12 10 9 14 14 C 1.34236 * 116.99495 * 180.02562 * 13 12 10 15 15 O 1.20826 * 120.00261 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99623 * 179.97438 * 14 13 12 17 17 H 1.09003 * 110.85888 * 297.66043 * 16 14 13 18 18 C 1.54629 * 110.97242 * 61.45298 * 16 14 13 19 19 C 1.51273 * 104.19733 * 142.91758 * 18 16 14 20 20 O 1.21300 * 124.94557 * 163.78413 * 19 18 16 21 21 N 1.34426 * 110.11784 * 343.74644 * 19 18 16 22 22 C 1.40764 * 124.35205 * 179.57403 * 21 19 18 23 23 C 1.40248 * 126.07837 * 180.02562 * 22 21 19 24 24 N 1.30827 * 108.33390 * 179.97438 * 23 22 21 25 25 N 1.40068 * 108.36935 * 359.97438 * 24 23 22 26 26 H 0.97006 * 126.05431 * 180.02562 * 25 24 23 27 27 C 1.35753 * 126.07782 * 359.68766 * 22 21 19 28 28 C 1.46765 * 111.29528 * 359.59036 * 21 19 18 29 29 H 0.96993 * 119.99996 * 180.02562 * 1 2 3 30 30 H 0.96992 * 119.99458 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46980 * 300.00161 * 12 10 9 32 32 H 1.08996 * 109.46805 * 60.00181 * 12 10 9 33 33 H 1.09006 * 110.48171 * 261.59416 * 18 16 14 34 34 H 1.09004 * 110.48620 * 24.23283 * 18 16 14 35 35 H 1.08004 * 125.83581 * 359.93758 * 23 22 21 36 36 H 1.07997 * 126.22135 * 0.04437 * 27 22 21 37 37 H 1.08993 * 110.25042 * 258.01436 * 28 21 19 38 38 H 1.09006 * 110.23881 * 136.01689 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1019 1.6964 -1.2125 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 8 2.1873 -5.9665 0.0016 14 6 1.6742 -7.2069 0.0016 15 8 0.4763 -7.3653 0.0017 16 6 2.5922 -8.4021 0.0016 17 1 3.2036 -8.4218 -0.9007 18 6 3.4766 -8.4207 1.2698 19 6 3.5797 -9.8866 1.6288 20 8 4.4006 -10.3605 2.3856 21 7 2.6285 -10.5875 0.9878 22 6 2.4573 -11.9803 1.0991 23 6 1.4799 -12.7469 0.4480 24 7 1.6373 -13.9976 0.7981 25 7 2.7196 -14.0753 1.6838 26 1 3.0592 -14.8826 2.1010 27 6 3.2130 -12.8211 1.8507 28 6 1.7917 -9.7141 0.1566 29 1 -0.4850 -0.8400 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6174 -4.9205 0.8914 32 1 0.6168 -4.9209 -0.8886 33 1 4.4631 -8.0108 1.0529 34 1 2.9996 -7.8630 2.0758 35 1 0.7258 -12.3693 -0.2266 36 1 4.0523 -12.5428 2.4708 37 1 0.8408 -9.5194 0.6525 38 1 1.6228 -10.1705 -0.8188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751653835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:12 Heat of formation + Delta-G solvation = -65.476390 kcal Electronic energy + Delta-G solvation = -25841.998314 eV Core-core repulsion = 21686.983924 eV Total energy + Delta-G solvation = -4155.014390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95803 -40.99546 -39.97020 -38.39218 -36.95845 -36.25095 -34.42117 -33.61480 -31.70918 -31.32559 -29.39809 -28.41471 -28.14271 -24.82717 -23.94337 -23.10423 -21.65787 -20.61202 -20.05507 -19.75235 -18.62590 -18.14614 -18.02483 -17.07638 -17.00879 -16.38493 -16.27637 -15.56199 -15.32367 -14.93260 -14.79998 -14.64666 -14.51210 -14.16826 -13.83983 -13.77539 -13.55948 -13.24433 -13.12844 -12.50409 -12.38792 -12.04207 -11.76872 -11.41558 -11.35566 -11.06735 -10.79921 -10.77191 -10.63876 -10.26061 -10.19538 -10.08823 -9.98492 -9.69155 -8.65202 -8.19681 -8.13061 -6.87881 -4.02922 1.38070 1.85779 1.95779 2.04197 2.39469 2.67548 2.77970 3.21632 3.30269 3.50291 3.62689 3.69942 3.82532 4.11666 4.27918 4.35666 4.47113 4.54771 4.64790 4.86298 4.97757 5.09285 5.09522 5.12539 5.18431 5.29833 5.40983 5.44792 5.49242 5.65044 5.71050 6.33188 6.36680 6.56945 6.80814 7.16840 7.51957 7.66199 7.70449 7.93901 8.42053 8.61204 9.29251 9.64574 10.54870 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.002059 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.861837 B =13593.549759 C =14107.115550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.006 4.006 3 Si 1.093 2.907 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.385 4.385 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.439 3.561 11 O -0.569 6.569 12 C 0.060 3.940 13 O -0.318 6.318 14 C 0.472 3.528 15 O -0.505 6.505 16 C -0.094 4.094 17 H 0.137 0.863 18 C -0.138 4.138 19 C 0.520 3.480 20 O -0.518 6.518 21 N -0.536 5.536 22 C 0.008 3.992 23 C 0.043 3.957 24 N -0.277 5.277 25 N -0.473 5.473 26 H 0.446 0.554 27 C 0.044 3.956 28 C 0.116 3.884 29 H 0.262 0.738 30 H 0.378 0.622 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.189 0.811 36 H 0.193 0.807 37 H 0.100 0.900 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -23.486 0.731 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.209 4.209 3 Si 0.918 3.082 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.514 4.514 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.224 3.776 11 O -0.452 6.452 12 C -0.017 4.017 13 O -0.232 6.232 14 C 0.314 3.686 15 O -0.394 6.394 16 C -0.114 4.114 17 H 0.154 0.846 18 C -0.178 4.178 19 C 0.308 3.692 20 O -0.394 6.394 21 N -0.263 5.263 22 C -0.094 4.094 23 C -0.146 4.146 24 N -0.100 5.100 25 N -0.185 5.185 26 H 0.291 0.709 27 C -0.105 4.105 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.212 0.788 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.118 0.882 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.280 -23.245 1.001 23.378 hybrid contribution -0.235 -1.179 0.197 1.218 sum 2.045 -24.425 1.198 24.539 Atomic orbital electron populations 1.70908 1.06548 1.29554 1.46199 1.26608 0.96504 1.02751 0.95051 0.83109 0.74459 0.73376 0.77225 1.20305 1.20844 1.20832 1.20565 0.94819 0.83360 1.52611 0.87955 1.41772 1.08380 1.05053 1.65013 1.19198 0.88374 0.83798 0.86259 1.90577 1.13266 1.86586 1.54776 1.22794 0.90788 0.84496 1.03630 1.86547 1.40208 1.13900 1.82516 1.22970 0.88017 0.84832 0.72806 1.90688 1.16456 1.86708 1.45518 1.21837 0.96721 0.90317 1.02494 0.84570 1.22308 1.03760 0.94173 0.97582 1.20868 0.79805 0.88938 0.79556 1.90684 1.37537 1.75341 1.35791 1.45169 1.31979 1.03702 1.45408 1.17561 1.01906 0.83141 1.06806 1.23722 0.99658 0.89792 1.01388 1.77290 1.04755 1.19251 1.08725 1.46166 1.25811 1.08282 1.38243 0.70942 1.22561 1.01195 0.84304 1.02400 1.22110 0.94177 0.87504 0.96852 0.92619 0.78838 0.89393 0.89347 0.85585 0.86512 0.79422 0.79065 0.88180 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 13.68 55.50 0.76 -23.37 16 2 C -0.01 -0.15 5.50 -17.47 -0.10 -0.25 16 3 Si 1.09 23.31 29.92 -169.99 -5.09 18.22 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.38 -10.39 9.68 -14.93 -0.14 -10.54 16 8 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 9 N -0.56 -13.55 5.28 -10.96 -0.06 -13.61 16 10 C 0.44 9.98 7.86 -10.98 -0.09 9.89 16 11 O -0.57 -15.15 16.08 -14.11 -0.23 -15.38 16 12 C 0.06 1.03 5.94 36.01 0.21 1.24 16 13 O -0.32 -5.04 9.74 -45.92 -0.45 -5.49 16 14 C 0.47 5.84 7.18 36.01 0.26 6.10 16 15 O -0.51 -7.03 15.32 -18.75 -0.29 -7.31 16 16 C -0.09 -0.80 3.66 -90.14 -0.33 -1.13 16 17 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.14 -1.26 6.40 -26.75 -0.17 -1.43 16 19 C 0.52 5.57 7.98 -10.86 -0.09 5.48 16 20 O -0.52 -6.93 15.64 5.54 0.09 -6.85 16 21 N -0.54 -4.97 3.16 -112.48 -0.36 -5.32 16 22 C 0.01 0.08 6.80 -83.89 -0.57 -0.49 16 23 C 0.04 0.37 11.53 -17.22 -0.20 0.17 16 24 N -0.28 -2.62 12.69 30.70 0.39 -2.23 16 25 N -0.47 -3.56 7.40 30.69 0.23 -3.33 16 26 H 0.45 1.86 8.96 -182.62 -1.64 0.22 16 27 C 0.04 0.39 11.18 -16.68 -0.19 0.20 16 28 C 0.12 0.88 6.24 -3.12 -0.02 0.86 16 29 H 0.26 6.77 6.77 -40.82 -0.28 6.49 16 30 H 0.38 8.28 6.73 -40.82 -0.27 8.00 16 31 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 32 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 33 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.12 1.09 7.89 -51.93 -0.41 0.68 16 35 H 0.19 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.19 1.67 6.51 -52.49 -0.34 1.33 16 37 H 0.10 0.82 7.06 -51.93 -0.37 0.46 16 38 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -36.03 340.00 -6.30 -42.33 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.01 Total: 7.11 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -1.42 Total: 10.10 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.96 Total: -47.86 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.87 Total: -35.03 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.09 Total: 18.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.03 -6.30 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751653835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.147 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds