Wall clock time and date at job start Fri Apr 10 2020 14:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00316 * 2 1 4 4 H 1.48495 * 109.47757 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47195 * 299.99991 * 3 2 1 6 6 H 1.48511 * 109.47139 * 59.99678 * 3 2 1 7 7 C 1.38949 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00428 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99727 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00257 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99898 * 179.97438 * 10 9 7 13 13 O 1.45195 * 109.47312 * 179.97438 * 12 10 9 14 14 C 1.34220 * 117.00370 * 179.97438 * 13 12 10 15 15 O 1.20827 * 119.99664 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00505 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.53673 * 32.07816 * 16 14 13 18 18 C 1.53098 * 109.50804 * 271.97308 * 16 14 13 19 19 O 1.43015 * 109.25977 * 183.21345 * 18 16 14 20 20 C 1.43007 * 113.73781 * 58.67144 * 19 18 16 21 21 C 1.53100 * 109.25978 * 301.32686 * 20 19 18 22 22 N 1.47011 * 109.50986 * 152.18811 * 16 14 13 23 23 C 1.46891 * 111.00155 * 302.33197 * 22 16 14 24 24 C 1.53007 * 109.46896 * 310.28701 * 23 22 16 25 25 F 1.39895 * 109.47362 * 66.09919 * 24 23 22 26 26 F 1.39895 * 109.46975 * 306.09810 * 24 23 22 27 27 H 0.96999 * 120.00158 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00619 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46935 * 59.99358 * 12 10 9 30 30 H 1.08998 * 109.46730 * 300.00061 * 12 10 9 31 31 H 1.09000 * 109.50735 * 63.27610 * 18 16 14 32 32 H 1.09002 * 109.54467 * 303.17662 * 18 16 14 33 33 H 1.09004 * 109.50989 * 181.39292 * 20 19 18 34 34 H 1.09005 * 109.51114 * 61.26252 * 20 19 18 35 35 H 1.09001 * 109.50988 * 296.91769 * 21 20 19 36 36 H 1.09001 * 109.50871 * 176.78302 * 21 20 19 37 37 H 1.08998 * 109.47585 * 190.29033 * 23 22 16 38 38 H 1.08994 * 109.47657 * 70.28130 * 23 22 16 39 39 H 1.09004 * 109.47162 * 186.10404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 8 2.1871 -5.9666 0.0027 14 6 1.6741 -7.2069 0.0037 15 8 0.4763 -7.3652 0.0038 16 6 2.5921 -8.4021 0.0037 17 1 3.5048 -8.1607 0.5485 18 6 2.9418 -8.7781 -1.4386 19 8 3.7515 -9.9570 -1.4356 20 6 3.1270 -11.0828 -0.8130 21 6 2.7792 -10.7302 0.6357 22 7 1.9196 -9.5377 0.6514 23 6 1.5155 -9.1981 2.0222 24 6 2.7034 -8.5859 2.7672 25 9 3.0346 -7.3568 2.1870 26 9 3.8003 -9.4504 2.6862 27 1 -0.4850 0.8400 -0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6173 -4.9213 -0.8880 30 1 0.6167 -4.9201 0.8919 31 1 3.4911 -7.9603 -1.9049 32 1 2.0258 -8.9671 -1.9985 33 1 3.8104 -11.9319 -0.8269 34 1 2.2161 -11.3391 -1.3540 35 1 3.6950 -10.5261 1.1905 36 1 2.2518 -11.5652 1.0970 37 1 1.1886 -10.1005 2.5388 38 1 0.6963 -8.4797 1.9922 39 1 2.4371 -8.4340 3.8133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786944375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:03 Heat of formation + Delta-G solvation = -260.515113 kcal Electronic energy + Delta-G solvation = -28769.733319 eV Core-core repulsion = 24155.572229 eV Total energy + Delta-G solvation = -4614.161090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.33181 -48.21513 -42.02636 -40.53261 -39.84437 -37.69984 -36.83863 -36.04270 -33.43891 -32.89140 -31.48469 -30.06292 -27.45357 -26.74062 -25.89231 -23.78070 -22.97423 -21.45015 -21.33739 -20.08674 -19.30681 -18.82702 -18.65492 -18.12100 -18.01048 -17.63160 -17.23231 -17.06936 -16.83676 -16.44994 -16.19059 -15.80117 -15.68301 -15.38606 -15.14416 -14.93140 -14.79644 -14.45237 -14.22168 -14.00057 -13.60805 -13.55765 -13.37192 -13.29860 -12.94808 -12.85368 -12.66541 -12.47496 -12.26732 -12.11630 -11.86999 -11.85789 -11.59344 -11.52180 -10.87974 -10.52360 -10.12437 -9.50199 -8.53314 -6.03824 0.92798 1.20295 1.33939 1.43215 1.57794 1.85768 2.26423 2.32070 2.71850 2.83041 3.04939 3.12042 3.21054 3.38601 3.51386 3.59248 3.66180 3.83726 3.95316 3.99760 4.13101 4.14035 4.20518 4.32314 4.38192 4.53676 4.55156 4.58320 4.81044 4.94873 5.21736 5.36634 5.39112 5.63173 5.88282 5.97871 6.44434 6.59415 7.02376 7.38761 7.92814 8.63977 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002980 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.872173 B = 9392.634041 C = 9660.840489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.997 3.003 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.072 3.928 13 O -0.337 6.337 14 C 0.476 3.524 15 O -0.507 6.507 16 C 0.048 3.952 17 H 0.092 0.908 18 C 0.078 3.922 19 O -0.387 6.387 20 C 0.052 3.948 21 C -0.003 4.003 22 N -0.516 5.516 23 C 0.000 4.000 24 C 0.205 3.795 25 F -0.218 7.218 26 F -0.204 7.204 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -23.457 4.231 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.005 4.005 13 O -0.252 6.252 14 C 0.318 3.682 15 O -0.395 6.395 16 C -0.062 4.062 17 H 0.110 0.890 18 C 0.001 3.999 19 O -0.305 6.305 20 C -0.024 4.024 21 C -0.129 4.129 22 N -0.242 5.242 23 C -0.129 4.129 24 C 0.150 3.850 25 F -0.199 7.199 26 F -0.185 7.185 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.170 0.830 38 H 0.121 0.879 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.321 -23.431 3.845 23.747 hybrid contribution 0.172 1.397 0.565 1.516 sum 0.492 -22.035 4.410 22.477 Atomic orbital electron populations 1.69672 1.06907 1.29676 1.49212 1.26108 0.96586 1.02515 0.95640 0.84809 0.78046 0.76615 0.78490 1.19668 1.19388 1.19372 1.19751 0.92910 0.83405 1.50633 0.89897 1.41728 1.09525 1.04125 1.64096 1.20098 0.88072 0.85388 0.84122 1.90537 1.15526 1.87675 1.56621 1.22532 0.90134 0.82500 1.05330 1.86572 1.40721 1.14811 1.83072 1.23437 0.88483 0.84140 0.72100 1.90625 1.16785 1.86589 1.45522 1.22245 0.95472 0.87360 1.01126 0.89024 1.22538 0.96798 0.89272 0.91332 1.88045 1.43181 1.19809 1.79483 1.23038 0.99543 0.88631 0.91199 1.23477 0.97735 0.92265 0.99443 1.62123 1.41707 1.03286 1.17048 1.23733 0.95589 1.05498 0.88065 1.23480 0.84549 0.74418 1.02511 1.93021 1.93585 1.46595 1.86727 1.92856 1.58318 1.69995 1.97360 0.90939 0.76545 0.87433 0.87597 0.87365 0.91010 0.85335 0.91399 0.91103 0.85686 0.83005 0.87889 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.53 13.05 21.66 0.28 -48.25 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 3 Si 1.00 42.24 29.55 68.60 2.03 44.26 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 5.01 7.16 -2.92 -0.02 4.99 16 9 N -0.56 -28.81 5.29 -306.98 -1.62 -30.44 16 10 C 0.44 21.70 7.86 87.66 0.69 22.39 16 11 O -0.62 -35.93 16.08 15.75 0.25 -35.68 16 12 C 0.07 2.77 5.94 71.24 0.42 3.19 16 13 O -0.34 -12.98 9.22 -44.97 -0.41 -13.39 16 14 C 0.48 15.25 4.86 71.24 0.35 15.59 16 15 O -0.51 -16.92 15.10 21.96 0.33 -16.58 16 16 C 0.05 1.26 1.86 44.18 0.08 1.34 16 17 H 0.09 2.68 5.49 -2.39 -0.01 2.67 16 18 C 0.08 1.90 6.27 72.01 0.45 2.35 16 19 O -0.39 -8.74 10.83 -148.98 -1.61 -10.36 16 20 C 0.05 0.78 7.01 72.02 0.50 1.29 16 21 C 0.00 -0.05 5.25 86.31 0.45 0.41 16 22 N -0.52 -10.40 4.48 -874.40 -3.92 -14.31 16 23 C 0.00 0.00 5.46 86.31 0.47 0.47 16 24 C 0.21 3.68 5.14 71.98 0.37 4.05 16 25 F -0.22 -6.23 12.36 44.97 0.56 -5.67 16 26 F -0.20 -3.93 13.84 44.97 0.62 -3.31 16 27 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 29 H 0.11 3.66 8.13 -2.39 -0.02 3.64 16 30 H 0.11 3.61 8.13 -2.39 -0.02 3.59 16 31 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.20 5.26 -2.39 -0.01 1.19 16 36 H 0.13 1.07 8.05 -2.39 -0.02 1.05 16 37 H 0.15 1.24 7.96 -2.39 -0.02 1.22 16 38 H 0.10 2.04 6.56 -2.39 -0.02 2.02 16 39 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -73.99 329.61 1.96 -72.03 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.38 Total: 28.87 kcal Atomic # 6 Polarization: 27.75 SS G_CDS: 5.07 Total: 32.82 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -5.26 Total: -93.00 kcal Atomic # 8 Polarization: -74.57 SS G_CDS: -1.44 Total: -76.02 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 1.18 Total: -8.98 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -73.99 1.96 -72.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786944375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.483 kcal (2) G-P(sol) polarization free energy of solvation -73.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds