Wall clock time and date at job start Fri Apr 10 2020 14:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31286 * 1 3 3 Si 1.86793 * 120.00161 * 2 1 4 4 H 1.48505 * 109.47047 * 270.00061 * 3 2 1 5 5 H 1.48502 * 109.47273 * 30.00077 * 3 2 1 6 6 H 1.48504 * 109.47228 * 150.00515 * 3 2 1 7 7 C 1.39007 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.37305 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.36441 * 126.05554 * 180.02562 * 9 7 2 11 11 C 1.35780 * 107.49823 * 180.02562 * 10 9 7 12 12 N 1.40292 * 126.10099 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99992 * 180.02562 * 12 11 10 14 14 O 1.21403 * 120.00301 * 0.02562 * 13 12 11 15 15 C 1.49310 * 119.99869 * 180.02562 * 13 12 11 16 16 O 1.21368 * 120.00236 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99869 * 179.97438 * 15 13 12 18 18 C 1.47018 * 125.65198 * 0.03025 * 17 15 13 19 19 C 1.54326 * 107.27797 * 181.01615 * 18 17 15 20 20 C 1.55157 * 102.93757 * 22.19423 * 19 18 17 21 21 H 1.08999 * 111.00751 * 82.56933 * 20 19 18 22 22 C 1.50704 * 111.00698 * 206.38373 * 20 19 18 23 23 O 1.20819 * 119.99406 * 0.02562 * 22 20 19 24 24 O 1.34230 * 119.99950 * 179.97438 * 22 20 19 25 25 C 1.47425 * 125.64876 * 179.71399 * 17 15 13 26 26 C 1.40729 * 107.80064 * 359.97438 * 11 10 9 27 27 N 1.30876 * 108.37459 * 0.26740 * 26 11 10 28 28 H 0.97001 * 119.99967 * 359.97438 * 1 2 3 29 29 H 1.08004 * 126.24811 * 0.02562 * 10 9 7 30 30 H 0.97003 * 120.00076 * 0.02562 * 12 11 10 31 31 H 1.08997 * 109.88471 * 300.44055 * 18 17 15 32 32 H 1.09011 * 109.88474 * 61.60329 * 18 17 15 33 33 H 1.08997 * 110.72204 * 140.55169 * 19 18 17 34 34 H 1.08994 * 110.72189 * 263.83301 * 19 18 17 35 35 H 0.96698 * 116.99265 * 180.02562 * 24 22 20 36 36 H 1.08998 * 110.37021 * 274.75470 * 25 17 15 37 37 H 1.09003 * 110.36703 * 37.07593 * 25 17 15 38 38 H 1.08002 * 125.80953 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.4944 2.0463 -1.4001 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4400 0.6999 7 6 2.0079 -1.2039 -0.0005 8 1 3.0878 -1.2040 -0.0010 9 7 1.3213 -2.3929 -0.0016 10 6 1.8750 -3.6399 -0.0017 11 6 0.8571 -4.5386 -0.0035 12 7 0.9877 -5.9354 -0.0047 13 6 -0.1117 -6.7150 -0.0070 14 8 -1.2150 -6.2085 -0.0084 15 6 0.0273 -8.2016 -0.0077 16 8 1.1303 -8.7080 -0.0058 17 7 -1.0721 -8.9812 -0.0094 18 6 -2.4621 -8.5023 -0.0114 19 6 -3.3754 -9.7461 0.0132 20 6 -2.4499 -10.8452 0.5988 21 1 -2.4220 -10.7935 1.6872 22 6 -2.8777 -12.2143 0.1367 23 8 -3.8316 -12.3341 -0.5950 24 8 -2.1985 -13.3005 0.5373 25 6 -1.0801 -10.4554 -0.0163 26 6 -0.3522 -3.8189 -0.0039 27 7 -0.0715 -2.5406 -0.0082 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8701 -0.0006 30 1 1.8693 -6.3402 -0.0040 31 1 -2.6448 -7.8908 0.8722 32 1 -2.6526 -7.9205 -0.9133 33 1 -4.2354 -9.5803 0.6620 34 1 -3.6963 -10.0089 -0.9947 35 1 -2.5103 -14.1570 0.2145 36 1 -0.9992 -10.8305 -1.0365 37 1 -0.2657 -10.8420 0.5965 38 1 -1.3431 -4.2484 -0.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:57 Heat of formation + Delta-G solvation = -60.183341 kcal Electronic energy + Delta-G solvation = -26145.252635 eV Core-core repulsion = 21990.467769 eV Total energy + Delta-G solvation = -4154.784866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14731 -40.44125 -39.59238 -38.23046 -37.49038 -36.53340 -34.43304 -33.23415 -32.17426 -30.34671 -29.70571 -28.12187 -26.24577 -24.93641 -23.57241 -22.60934 -21.05674 -20.79787 -19.78039 -19.44095 -18.59511 -17.77905 -17.58754 -17.40778 -16.46378 -16.19549 -15.87630 -15.53264 -15.17084 -14.84321 -14.50044 -14.02997 -13.98438 -13.78213 -13.58389 -13.24813 -13.11503 -12.97254 -12.78979 -12.08320 -12.04450 -11.81574 -11.74664 -11.52597 -11.31568 -11.26508 -11.21452 -11.01730 -10.87292 -10.56961 -10.31780 -9.25581 -9.13190 -8.97193 -8.89788 -8.15278 -6.80480 -6.62380 -4.29751 1.57537 1.67157 2.23959 2.64567 2.91599 3.02591 3.07541 3.27217 3.58712 3.67829 3.78233 3.92800 4.11232 4.34176 4.49956 4.53061 4.78634 4.90999 4.95805 4.96352 4.98002 5.24813 5.36091 5.51281 5.68079 5.81014 5.96588 6.02892 6.17936 6.33309 6.73087 6.86588 6.87686 7.07424 7.14228 7.41381 7.60625 7.79478 8.05508 8.15705 8.45202 8.66813 9.28922 9.57546 10.33392 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.002212 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.962643 B =12654.865320 C =13203.612352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.321 4.321 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.069 4.069 12 N -0.582 5.582 13 C 0.487 3.513 14 O -0.517 6.517 15 C 0.531 3.469 16 O -0.526 6.526 17 N -0.597 5.597 18 C 0.107 3.893 19 C -0.120 4.120 20 C -0.101 4.101 21 H 0.127 0.873 22 C 0.494 3.506 23 O -0.507 6.507 24 O -0.513 6.513 25 C 0.122 3.878 26 C -0.026 4.026 27 N -0.261 5.261 28 H 0.276 0.724 29 H 0.149 0.851 30 H 0.409 0.591 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.412 0.588 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -19.854 1.482 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.229 4.229 11 C -0.175 4.175 12 N -0.225 5.225 13 C 0.267 3.733 14 O -0.394 6.394 15 C 0.316 3.684 16 O -0.402 6.402 17 N -0.332 5.332 18 C -0.015 4.015 19 C -0.158 4.158 20 C -0.121 4.121 21 H 0.144 0.856 22 C 0.335 3.665 23 O -0.394 6.394 24 O -0.325 6.325 25 C -0.001 4.001 26 C -0.202 4.202 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.244 0.756 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.272 0.728 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.124 -17.994 1.418 18.515 hybrid contribution 0.994 -1.051 -0.198 1.460 sum -3.130 -19.045 1.221 19.340 Atomic orbital electron populations 1.70207 1.06169 1.28161 1.34825 1.25670 0.95742 1.00374 0.95375 0.85800 0.79413 0.79764 0.79038 1.19525 1.20038 1.18733 1.19927 0.91768 0.80456 1.53219 0.86427 1.44570 1.04099 1.03368 1.38449 1.21305 0.96994 0.85203 1.19367 1.17236 0.94647 0.80498 1.25125 1.42120 1.08518 1.04606 1.67265 1.19434 0.85366 0.86504 0.81950 1.90646 1.25236 1.74080 1.49466 1.20071 0.83202 0.88033 0.77141 1.90749 1.24873 1.75592 1.48962 1.48111 1.06911 1.06120 1.72080 1.22284 0.78460 0.95755 1.04993 1.22799 0.97505 0.91942 1.03524 1.22277 0.97711 0.88425 1.03677 0.85562 1.22947 0.79925 0.86672 0.76959 1.90749 1.27484 1.87037 1.34179 1.84550 1.58648 1.18506 1.70765 1.22124 0.95815 0.80424 1.01696 1.24145 0.97913 0.90746 1.07366 1.78265 0.90094 1.14988 1.25784 0.91340 0.83345 0.75593 0.89314 0.89326 0.88671 0.88857 0.72836 0.90428 0.88535 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.95 11.81 55.50 0.66 -20.29 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.52 29.55 -169.99 -5.02 13.50 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.32 -8.32 10.25 -14.81 -0.15 -8.47 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.71 3.73 -11.40 -0.04 -3.75 16 10 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 11 C -0.07 -1.57 6.90 -83.92 -0.58 -2.15 16 12 N -0.58 -10.76 5.45 -10.45 -0.06 -10.82 16 13 C 0.49 8.56 7.82 -11.65 -0.09 8.47 16 14 O -0.52 -9.87 11.26 5.45 0.06 -9.81 16 15 C 0.53 8.01 7.91 -11.65 -0.09 7.92 16 16 O -0.53 -8.63 16.73 5.48 0.09 -8.53 16 17 N -0.60 -7.14 3.32 -170.94 -0.57 -7.71 16 18 C 0.11 1.12 5.48 -3.07 -0.02 1.10 16 19 C -0.12 -0.93 6.08 -24.90 -0.15 -1.08 16 20 C -0.10 -0.73 3.56 -89.50 -0.32 -1.05 16 21 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 22 C 0.49 3.79 7.65 36.01 0.28 4.07 16 23 O -0.51 -5.37 16.47 -18.74 -0.31 -5.68 16 24 O -0.51 -2.83 13.42 -39.26 -0.53 -3.36 16 25 C 0.12 1.11 6.37 -2.41 -0.02 1.09 16 26 C -0.03 -0.66 10.85 -17.02 -0.18 -0.84 16 27 N -0.26 -7.36 10.39 30.81 0.32 -7.04 16 28 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.15 2.88 8.06 -52.48 -0.42 2.46 16 30 H 0.41 6.53 8.29 -40.82 -0.34 6.19 16 31 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 32 H 0.09 1.02 7.69 -51.92 -0.40 0.62 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.79 7.39 -51.93 -0.38 0.40 16 35 H 0.41 0.60 9.10 45.56 0.41 1.02 16 36 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 37 H 0.10 0.86 8.03 -51.93 -0.42 0.45 16 38 H 0.18 4.30 5.92 -52.49 -0.31 3.99 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -34.43 335.84 -5.01 -39.44 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.06 Total: 10.84 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.61 Total: 8.16 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.31 Total: -49.61 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.68 Total: -27.38 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.43 -5.01 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.746 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds