Wall clock time and date at job start Fri Apr 10 2020 14:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31286 * 1 3 3 Si 1.86793 * 120.00161 * 2 1 4 4 H 1.48505 * 109.47047 * 270.00061 * 3 2 1 5 5 H 1.48502 * 109.47273 * 30.00077 * 3 2 1 6 6 H 1.48504 * 109.47228 * 150.00515 * 3 2 1 7 7 C 1.39007 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.37305 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.36441 * 126.05554 * 180.02562 * 9 7 2 11 11 C 1.35780 * 107.49823 * 180.02562 * 10 9 7 12 12 N 1.40292 * 126.10099 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99992 * 180.02562 * 12 11 10 14 14 O 1.21403 * 120.00301 * 0.02562 * 13 12 11 15 15 C 1.49310 * 119.99869 * 180.02562 * 13 12 11 16 16 O 1.21368 * 120.00236 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99869 * 179.97438 * 15 13 12 18 18 C 1.47018 * 125.65198 * 0.03025 * 17 15 13 19 19 C 1.54326 * 107.27797 * 181.01615 * 18 17 15 20 20 C 1.55157 * 102.93757 * 22.19423 * 19 18 17 21 21 H 1.08999 * 111.00751 * 82.56933 * 20 19 18 22 22 C 1.50704 * 111.00698 * 206.38373 * 20 19 18 23 23 O 1.20819 * 119.99406 * 0.02562 * 22 20 19 24 24 O 1.34230 * 119.99950 * 179.97438 * 22 20 19 25 25 C 1.47425 * 125.64876 * 179.71399 * 17 15 13 26 26 C 1.40729 * 107.80064 * 359.97438 * 11 10 9 27 27 N 1.30876 * 108.37459 * 0.26740 * 26 11 10 28 28 H 0.97001 * 119.99967 * 359.97438 * 1 2 3 29 29 H 1.08004 * 126.24811 * 0.02562 * 10 9 7 30 30 H 0.97003 * 120.00076 * 0.02562 * 12 11 10 31 31 H 1.08997 * 109.88471 * 300.44055 * 18 17 15 32 32 H 1.09011 * 109.88474 * 61.60329 * 18 17 15 33 33 H 1.08997 * 110.72204 * 140.55169 * 19 18 17 34 34 H 1.08994 * 110.72189 * 263.83301 * 19 18 17 35 35 H 0.96698 * 116.99265 * 180.02562 * 24 22 20 36 36 H 1.08998 * 110.37021 * 274.75470 * 25 17 15 37 37 H 1.09003 * 110.36703 * 37.07593 * 25 17 15 38 38 H 1.08002 * 125.80953 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.4944 2.0463 -1.4001 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4400 0.6999 7 6 2.0079 -1.2039 -0.0005 8 1 3.0878 -1.2040 -0.0010 9 7 1.3213 -2.3929 -0.0016 10 6 1.8750 -3.6399 -0.0017 11 6 0.8571 -4.5386 -0.0035 12 7 0.9877 -5.9354 -0.0047 13 6 -0.1117 -6.7150 -0.0070 14 8 -1.2150 -6.2085 -0.0084 15 6 0.0273 -8.2016 -0.0077 16 8 1.1303 -8.7080 -0.0058 17 7 -1.0721 -8.9812 -0.0094 18 6 -2.4621 -8.5023 -0.0114 19 6 -3.3754 -9.7461 0.0132 20 6 -2.4499 -10.8452 0.5988 21 1 -2.4220 -10.7935 1.6872 22 6 -2.8777 -12.2143 0.1367 23 8 -3.8316 -12.3341 -0.5950 24 8 -2.1985 -13.3005 0.5373 25 6 -1.0801 -10.4554 -0.0163 26 6 -0.3522 -3.8189 -0.0039 27 7 -0.0715 -2.5406 -0.0082 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8701 -0.0006 30 1 1.8693 -6.3402 -0.0040 31 1 -2.6448 -7.8908 0.8722 32 1 -2.6526 -7.9205 -0.9133 33 1 -4.2354 -9.5803 0.6620 34 1 -3.6963 -10.0089 -0.9947 35 1 -2.5103 -14.1570 0.2145 36 1 -0.9992 -10.8305 -1.0365 37 1 -0.2657 -10.8420 0.5965 38 1 -1.3431 -4.2484 -0.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:56 Heat of formation + Delta-G solvation = -86.594216 kcal Electronic energy + Delta-G solvation = -26146.397896 eV Core-core repulsion = 21990.467769 eV Total energy + Delta-G solvation = -4155.930128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17733 -41.62087 -41.05101 -39.55560 -38.54779 -37.11925 -36.06940 -35.01091 -33.09623 -32.28239 -30.48876 -29.89213 -27.56631 -26.51942 -24.51397 -23.70406 -22.87288 -21.45031 -21.38724 -20.93434 -19.39055 -19.17533 -18.79058 -18.25066 -17.72345 -17.43766 -17.02587 -16.95229 -16.63450 -16.01835 -15.83503 -15.49266 -15.27030 -14.88641 -14.80463 -14.66374 -14.28528 -14.07303 -13.73128 -13.50363 -13.37722 -13.00632 -12.90820 -12.74237 -12.65124 -12.49351 -12.31615 -12.08447 -12.00350 -11.89250 -11.66410 -11.05994 -10.86020 -10.52885 -10.13196 -9.97669 -8.60943 -8.48251 -6.25649 0.25281 0.97380 1.24054 1.29798 1.41891 1.58902 1.72157 1.98711 2.03275 2.13266 2.45721 2.53477 2.83043 3.08320 3.16769 3.40313 3.47984 3.91902 4.09142 4.20143 4.38614 4.40738 4.53243 4.54748 4.67263 4.75376 4.89795 4.96850 4.99159 5.03227 5.13854 5.24069 5.32097 5.58444 5.90761 5.95349 6.19049 6.36945 6.64473 6.72712 6.96144 7.06744 7.42038 7.64126 8.50917 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.002212 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.962643 B =12654.865320 C =13203.612352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.005 4.005 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.164 5.164 10 C -0.075 4.075 11 C -0.055 4.055 12 N -0.583 5.583 13 C 0.488 3.512 14 O -0.532 6.532 15 C 0.538 3.462 16 O -0.539 6.539 17 N -0.589 5.589 18 C 0.104 3.896 19 C -0.110 4.110 20 C -0.092 4.092 21 H 0.148 0.852 22 C 0.504 3.496 23 O -0.539 6.539 24 O -0.508 6.508 25 C 0.119 3.881 26 C -0.046 4.046 27 N -0.308 5.308 28 H 0.278 0.722 29 H 0.187 0.813 30 H 0.423 0.577 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.431 0.569 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 -21.501 1.949 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.068 4.932 10 C -0.226 4.226 11 C -0.161 4.161 12 N -0.228 5.228 13 C 0.270 3.730 14 O -0.409 6.409 15 C 0.321 3.679 16 O -0.417 6.417 17 N -0.323 5.323 18 C -0.017 4.017 19 C -0.148 4.148 20 C -0.112 4.112 21 H 0.166 0.834 22 C 0.346 3.654 23 O -0.429 6.429 24 O -0.321 6.321 25 C -0.003 4.003 26 C -0.222 4.222 27 N -0.139 5.139 28 H 0.087 0.913 29 H 0.204 0.796 30 H 0.260 0.740 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.293 0.707 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.959 -19.728 1.890 20.038 hybrid contribution 0.566 -0.806 -0.345 1.043 sum -2.393 -20.534 1.546 20.731 Atomic orbital electron populations 1.70374 1.08340 1.29235 1.36896 1.26871 0.96510 1.04277 0.94084 0.84591 0.78313 0.74090 0.79226 1.18940 1.20127 1.16810 1.20637 0.93012 0.80807 1.53919 0.84159 1.44838 1.03758 1.04721 1.39899 1.22001 0.98854 0.84216 1.17531 1.17265 0.93472 0.82400 1.22981 1.42057 1.09714 1.02966 1.68061 1.20035 0.84755 0.87905 0.80307 1.90641 1.25948 1.74929 1.49413 1.19395 0.83870 0.86698 0.77985 1.90748 1.25414 1.75296 1.50237 1.48164 1.06645 1.07472 1.70005 1.22352 0.78196 0.97110 1.04083 1.22720 0.97494 0.90650 1.03892 1.22244 0.96000 0.88174 1.04762 0.83430 1.22840 0.79303 0.87125 0.76093 1.90753 1.28994 1.87510 1.35642 1.84508 1.58091 1.19187 1.70351 1.22325 0.97275 0.78144 1.02525 1.24270 0.98942 0.90695 1.08261 1.78159 0.91811 1.16550 1.27428 0.91258 0.79584 0.73979 0.89833 0.90657 0.86789 0.89356 0.70650 0.89825 0.87827 0.80536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.38 11.81 21.66 0.26 -46.12 16 2 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 3 Si 1.02 37.89 29.55 68.60 2.03 39.92 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 7 C -0.35 -18.35 10.25 84.02 0.86 -17.49 16 8 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 9 N -0.16 -8.95 3.73 -189.98 -0.71 -9.66 16 10 C -0.08 -3.45 11.50 83.41 0.96 -2.49 16 11 C -0.05 -2.48 6.90 37.82 0.26 -2.22 16 12 N -0.58 -21.10 5.45 -305.33 -1.66 -22.76 16 13 C 0.49 16.94 7.82 87.23 0.68 17.62 16 14 O -0.53 -20.43 11.26 -3.41 -0.04 -20.47 16 15 C 0.54 15.54 7.91 87.23 0.69 16.23 16 16 O -0.54 -16.80 16.73 -3.30 -0.06 -16.85 16 17 N -0.59 -13.19 3.32 -813.07 -2.70 -15.89 16 18 C 0.10 2.08 5.48 86.73 0.48 2.55 16 19 C -0.11 -1.49 6.08 31.78 0.19 -1.30 16 20 C -0.09 -1.08 3.56 -10.07 -0.04 -1.12 16 21 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 22 C 0.50 6.46 7.65 71.24 0.54 7.00 16 23 O -0.54 -10.41 16.47 21.98 0.36 -10.05 16 24 O -0.51 -4.10 13.42 -51.42 -0.69 -4.79 16 25 C 0.12 1.88 6.37 86.93 0.55 2.43 16 26 C -0.05 -2.40 10.85 85.44 0.93 -1.48 16 27 N -0.31 -18.03 10.39 -56.43 -0.59 -18.62 16 28 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.19 6.83 8.06 -2.91 -0.02 6.81 16 30 H 0.42 12.90 8.29 -92.71 -0.77 12.13 16 31 H 0.08 1.78 7.58 -2.39 -0.02 1.76 16 32 H 0.08 1.72 7.69 -2.38 -0.02 1.71 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.35 7.39 -2.39 -0.02 1.33 16 35 H 0.43 0.04 9.10 -74.06 -0.67 -0.63 16 36 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 37 H 0.10 1.56 8.03 -2.39 -0.02 1.54 16 38 H 0.18 8.95 5.92 -2.91 -0.02 8.93 16 Total: -1.00 -76.64 335.84 2.49 -74.15 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.29 Total: 31.23 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.58 Total: 19.93 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -5.41 Total: -113.05 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.42 Total: -52.17 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -76.64 2.49 -74.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.447 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds