Wall clock time and date at job start Fri Apr 10 2020 14:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 S 1.81408 * 109.46853 * 270.21387 * 7 6 5 9 9 C 1.81401 * 103.00023 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47299 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99929 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00321 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00273 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47473 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99496 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00325 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00029 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00166 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00151 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99730 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00091 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46895 * 90.00058 * 21 19 17 23 23 H 1.48495 * 109.46991 * 209.99545 * 21 19 17 24 24 H 1.48495 * 109.47244 * 330.00167 * 21 19 17 25 25 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 27 27 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 28 28 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 29 29 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 31 31 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 32 32 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 33 33 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 34 34 H 1.09002 * 109.46645 * 299.99894 * 9 8 7 35 35 H 1.09004 * 109.47220 * 59.99422 * 9 8 7 36 36 H 0.97003 * 119.99586 * 359.97438 * 12 10 9 37 37 H 1.09008 * 109.46685 * 299.99620 * 13 12 10 38 38 H 1.08999 * 109.47265 * 59.99629 * 13 12 10 39 39 H 0.96998 * 119.99860 * 359.97438 * 16 14 13 40 40 H 0.97000 * 119.99409 * 180.02562 * 20 19 17 41 41 H 1.08001 * 119.99700 * 359.96970 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 16 4.6364 -3.0257 -1.7109 9 6 5.5383 -4.5863 -1.5065 10 6 5.8685 -5.1569 -2.8616 11 8 5.5293 -4.5683 -3.8664 12 7 6.5408 -6.3211 -2.9571 13 6 6.8623 -6.8754 -4.2744 14 6 7.6103 -8.1726 -4.1047 15 8 7.8515 -8.5925 -2.9926 16 7 8.0112 -8.8662 -5.1885 17 6 8.6912 -10.0465 -5.0341 18 1 8.9060 -10.4204 -4.0439 19 6 9.1050 -10.7613 -6.1515 20 7 8.8441 -10.3061 -7.3563 21 14 10.0322 -12.3693 -5.9410 22 1 9.0651 -13.4948 -5.8869 23 1 10.9537 -12.5632 -7.0892 24 1 10.8147 -12.3280 -4.6796 25 6 2.1981 -1.1970 -0.0005 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 -0.0091 32 1 5.2866 -2.3718 0.5133 33 1 3.7450 -3.2618 0.5132 34 1 6.4605 -4.4034 -0.9551 35 1 4.9194 -5.2941 -0.9548 36 1 6.8123 -6.7916 -2.1535 37 1 5.9404 -7.0577 -4.8268 38 1 7.4819 -6.1676 -4.8251 39 1 7.8180 -8.5306 -6.0778 40 1 9.1327 -10.8053 -8.1363 41 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344230084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:06 Heat of formation + Delta-G solvation = -60.201795 kcal Electronic energy + Delta-G solvation = -22417.293013 eV Core-core repulsion = 18808.800561 eV Total energy + Delta-G solvation = -3608.492452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73102 -39.56462 -38.13075 -34.51907 -33.90243 -33.72298 -32.29314 -31.44623 -30.52690 -27.82874 -27.21273 -26.90832 -24.44095 -22.46559 -21.18119 -20.38481 -19.64326 -18.18058 -17.36130 -16.83811 -16.42095 -15.96947 -15.66473 -15.51512 -15.46735 -15.23154 -14.49072 -14.42003 -14.24899 -13.96223 -13.77762 -13.57390 -13.44124 -13.27834 -13.01309 -12.76226 -12.43257 -12.24504 -12.06279 -11.87157 -11.66012 -11.40136 -11.31643 -11.14861 -10.48365 -10.35003 -10.20969 -9.91171 -9.66978 -9.07519 -8.90475 -8.86432 -8.67985 -8.13688 -7.77227 -6.54490 -3.96782 0.68318 1.08863 1.59282 2.36634 2.67500 3.09535 3.19845 3.23771 3.32248 3.51899 3.69847 4.08510 4.26823 4.39919 4.57058 4.78642 4.80030 4.82596 4.83504 4.86552 4.97655 5.09424 5.13990 5.17169 5.18525 5.27473 5.34767 5.48395 5.72524 5.81552 5.85496 5.91017 6.02261 6.14813 6.23530 6.28152 6.56950 6.68559 7.43065 7.65983 7.88278 8.30496 8.41616 9.01173 9.35470 9.83036 10.62245 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.044971 B = 0.001652 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.477592 B =16941.709416 C =17020.749986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.065 4.065 7 C -0.070 4.070 8 S -0.166 6.166 9 C -0.131 4.131 10 C 0.528 3.472 11 O -0.528 6.528 12 N -0.703 5.703 13 C 0.110 3.890 14 C 0.427 3.573 15 O -0.599 6.599 16 N -0.547 5.547 17 C -0.307 4.307 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.893 5.893 21 Si 0.934 3.066 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.102 4.102 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 20.070 15.087 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.218 4.218 8 S 0.062 5.938 9 C -0.283 4.283 10 C 0.311 3.689 11 O -0.405 6.405 12 N -0.357 5.357 13 C -0.018 4.018 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.182 5.182 17 C -0.436 4.436 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.122 4.122 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.250 0.750 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.825 20.540 13.924 27.933 hybrid contribution 0.965 -1.559 0.955 2.067 sum -11.860 18.981 14.879 26.876 Atomic orbital electron populations 1.20799 0.91044 1.02746 1.02555 1.19906 0.96187 0.93010 0.99638 1.21073 0.94330 0.97538 1.00761 1.21118 0.94288 0.97954 1.00067 1.21048 1.00095 0.91765 0.99761 1.19142 0.93477 0.93059 1.01000 1.22450 1.03167 0.97895 0.98286 1.87816 1.73590 1.24864 1.07493 1.23521 1.04813 0.99805 1.00112 1.19538 0.78477 0.81071 0.89783 1.90746 1.52773 1.59632 1.37343 1.45585 1.57021 1.22808 1.10329 1.20979 1.00691 0.95217 0.84880 1.19711 0.86173 0.86989 0.85864 1.90494 1.62105 1.71225 1.24721 1.41792 1.48507 1.20584 1.07305 1.19734 1.31444 0.97387 0.95040 0.87647 1.25339 0.97801 1.00005 0.94536 1.69618 1.46084 1.39791 0.97831 0.85799 0.79117 0.80940 0.78091 1.20243 1.20766 1.19318 1.20936 0.93214 0.97941 1.00059 0.90980 0.91467 0.91571 0.86081 0.85843 0.85763 0.89095 0.89131 0.87093 0.87093 0.75023 0.89680 0.89675 0.76991 0.91537 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.09 -0.71 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -0.91 9.70 -39.58 -0.38 -1.30 16 4 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 6 C -0.07 -0.60 5.14 -104.63 -0.54 -1.14 16 7 C -0.07 -0.60 6.07 36.00 0.22 -0.38 16 8 S -0.17 -2.03 20.86 -107.50 -2.24 -4.28 16 9 C -0.13 -1.47 6.42 36.00 0.23 -1.24 16 10 C 0.53 8.16 7.85 -10.99 -0.09 8.08 16 11 O -0.53 -10.06 15.87 5.55 0.09 -9.98 16 12 N -0.70 -11.30 5.53 -61.48 -0.34 -11.64 16 13 C 0.11 2.00 6.15 -5.20 -0.03 1.97 16 14 C 0.43 9.65 7.85 -10.99 -0.09 9.57 16 15 O -0.60 -15.05 15.24 5.55 0.08 -14.96 16 16 N -0.55 -13.45 5.29 -10.97 -0.06 -13.51 16 17 C -0.31 -8.27 9.68 -14.94 -0.14 -8.41 16 18 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 21 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.10 -0.90 9.36 -39.58 -0.37 -1.27 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.07 0.31 8.09 -51.92 -0.42 -0.11 16 29 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.09 0.65 8.09 -51.92 -0.42 0.23 16 33 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.11 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.11 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.41 6.34 7.44 -40.82 -0.30 6.03 16 37 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -32.35 372.16 -9.10 -41.46 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.62 Total: 12.75 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.32 Total: 2.19 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.33 Total: -48.13 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.17 Total: -24.94 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.24 Total: -4.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.35 -9.10 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344230084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.746 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds