Wall clock time and date at job start Fri Apr 10 2020 14:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38136 * 120.04011 * 2 1 4 4 C 1.38258 * 120.07096 * 180.27477 * 3 2 1 5 5 C 1.38307 * 120.13843 * 359.44734 * 4 3 2 6 6 N 1.48019 * 119.96603 * 180.29867 * 5 4 3 7 7 O 1.21808 * 119.99749 * 359.97438 * 6 5 4 8 8 O 1.21792 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.38089 * 120.07101 * 0.27156 * 5 4 3 10 10 C 1.38851 * 120.03134 * 179.72079 * 2 1 3 11 11 N 1.39945 * 120.06976 * 359.97438 * 10 2 1 12 12 C 1.34780 * 119.99688 * 145.30147 * 11 10 2 13 13 O 1.21583 * 120.00305 * 4.50354 * 12 11 10 14 14 N 1.34779 * 119.99752 * 184.49684 * 12 11 10 15 15 C 1.46504 * 119.99981 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46923 * 180.02562 * 15 14 12 17 17 O 1.21288 * 120.00071 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99634 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99878 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99666 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00304 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46956 * 89.99663 * 23 21 19 25 25 H 1.48497 * 109.47244 * 209.99678 * 23 21 19 26 26 H 1.48502 * 109.46995 * 330.00025 * 23 21 19 27 27 H 1.08998 * 109.47170 * 270.27980 * 1 2 3 28 28 H 1.08994 * 109.46760 * 30.27613 * 1 2 3 29 29 H 1.08993 * 109.47170 * 150.27817 * 1 2 3 30 30 H 1.07994 * 119.96528 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.92977 * 179.71837 * 4 3 2 32 32 H 1.08007 * 120.03716 * 179.97438 * 9 5 4 33 33 H 0.96991 * 120.00030 * 325.30192 * 11 10 2 34 34 H 0.97002 * 119.99806 * 0.02562 * 14 12 11 35 35 H 1.09005 * 109.46640 * 299.99662 * 15 14 12 36 36 H 1.08995 * 109.47148 * 59.99947 * 15 14 12 37 37 H 0.96998 * 120.00023 * 0.02562 * 18 16 15 38 38 H 0.96996 * 120.00509 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1966 -0.0057 5 6 4.2762 0.0009 0.0000 6 7 5.7564 0.0062 0.0006 7 8 6.3616 1.0632 -0.0046 8 8 6.3691 -1.0464 0.0052 9 6 3.5908 -1.1979 0.0059 10 6 2.2019 -1.2021 0.0059 11 7 1.5043 -2.4153 0.0123 12 6 2.0001 -3.4812 -0.6469 13 8 3.0917 -3.4136 -1.1782 14 7 1.2860 -4.6220 -0.7171 15 6 1.8251 -5.7809 -1.4332 16 6 0.8384 -6.9178 -1.3637 17 8 -0.2115 -6.7744 -0.7737 18 7 1.1228 -8.0940 -1.9573 19 6 0.2254 -9.1285 -1.8936 20 1 -0.7095 -9.0008 -1.3682 21 6 0.5188 -10.3413 -2.5051 22 7 1.6562 -10.4964 -3.1448 23 14 -0.7042 -11.7507 -2.4190 24 1 -1.6301 -11.6740 -3.5776 25 1 0.0266 -13.0429 -2.4540 26 1 -1.4813 -11.6554 -1.1572 27 1 -0.3633 0.0050 1.0276 28 1 -0.3632 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 1.6586 2.1311 -0.0004 31 1 4.1194 2.1328 -0.0103 32 1 4.1342 -2.1313 0.0100 33 1 0.6641 -2.4890 0.4912 34 1 0.4150 -4.6758 -0.2935 35 1 1.9994 -5.5147 -2.4758 36 1 2.7652 -6.0865 -0.9741 37 1 1.9627 -8.2087 -2.4288 38 1 1.8612 -11.3431 -3.5713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348152200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:54 Heat of formation + Delta-G solvation = -39.781733 kcal Electronic energy + Delta-G solvation = -25802.521304 eV Core-core repulsion = 21648.621118 eV Total energy + Delta-G solvation = -4153.900186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28497 -41.08101 -39.39532 -38.28548 -36.62425 -35.35933 -34.68977 -33.87965 -33.46670 -31.48253 -30.51094 -28.91549 -27.59568 -25.35070 -24.71516 -23.56586 -21.92687 -21.11949 -19.84527 -19.64709 -18.90244 -18.51811 -18.07983 -17.59149 -16.92795 -16.23939 -16.04563 -15.85963 -15.38321 -15.08159 -14.81185 -14.52080 -14.34361 -14.16504 -14.01870 -13.59163 -13.10905 -12.83648 -12.55403 -12.33108 -12.20200 -12.15349 -11.70088 -11.63298 -11.31658 -11.19586 -11.18958 -10.94417 -10.51915 -10.41098 -10.32108 -9.71544 -9.65807 -9.17171 -8.74953 -8.64766 -8.18558 -6.58689 -4.01335 -0.35103 0.62291 1.14039 1.27462 2.26480 2.75573 3.05967 3.12783 3.17683 3.22448 3.64252 3.87725 4.05182 4.10457 4.15992 4.34448 4.47606 4.60882 4.75040 4.96057 5.01272 5.09586 5.17242 5.31488 5.41871 5.55782 5.68529 5.73796 5.76229 5.83722 5.94255 6.17026 6.36150 6.42600 6.58844 7.38921 7.56147 7.76333 7.83499 8.31044 8.36706 8.96519 9.30171 9.77164 10.57916 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002304 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.599673 B =12150.447515 C =13265.226905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.101 4.101 4 C -0.074 4.074 5 C -0.032 4.032 6 N 0.030 4.970 7 O -0.167 6.167 8 O -0.152 6.152 9 C -0.057 4.057 10 C 0.176 3.824 11 N -0.684 5.684 12 C 0.702 3.298 13 O -0.574 6.574 14 N -0.712 5.712 15 C 0.125 3.875 16 C 0.426 3.574 17 O -0.600 6.600 18 N -0.545 5.545 19 C -0.307 4.307 20 H 0.106 0.894 21 C 0.027 3.973 22 N -0.892 5.892 23 Si 0.934 3.066 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.268 1.268 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.414 0.586 34 H 0.410 0.590 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.397 0.603 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 22.100 6.427 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.069 4.069 3 C -0.120 4.120 4 C -0.094 4.094 5 C -0.116 4.116 6 N 0.549 4.451 7 O -0.381 6.381 8 O -0.370 6.370 9 C -0.078 4.078 10 C 0.079 3.921 11 N -0.332 5.332 12 C 0.402 3.598 13 O -0.451 6.451 14 N -0.368 5.368 15 C -0.002 4.002 16 C 0.211 3.789 17 O -0.487 6.487 18 N -0.180 5.180 19 C -0.436 4.436 20 H 0.124 0.876 21 C -0.176 4.176 22 N -0.532 5.532 23 Si 0.760 3.240 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.193 1.193 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.191 0.809 33 H 0.251 0.749 34 H 0.248 0.752 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.231 0.769 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.684 21.912 6.176 22.828 hybrid contribution -0.389 -0.956 0.039 1.033 sum -2.073 20.956 6.215 21.956 Atomic orbital electron populations 1.20905 0.89367 1.04384 1.03431 1.20170 0.97408 0.91456 0.97817 1.20833 0.92314 0.98020 1.00826 1.20978 0.94615 0.97035 0.96801 1.20876 0.79476 0.96437 1.14778 1.43573 1.03567 1.00451 0.97473 1.94508 1.69360 1.20472 1.53761 1.94594 1.68655 1.20837 1.52872 1.21217 0.93494 0.98736 0.94369 1.16953 0.89647 0.84901 1.00611 1.42553 1.26838 1.08754 1.55085 1.15850 0.84302 0.80146 0.79499 1.90959 1.20098 1.82616 1.51403 1.44763 1.22958 1.10933 1.58165 1.20907 0.97002 0.84677 0.97662 1.19654 0.88738 0.84523 0.85947 1.90492 1.27005 1.82565 1.48608 1.41787 1.19824 1.10049 1.46313 1.19725 1.00823 0.89990 1.33100 0.87628 1.25347 0.97233 0.99044 0.96019 1.69609 1.22566 1.26914 1.34101 0.85803 0.79646 0.79524 0.79001 1.20215 1.20720 1.19293 0.89805 0.90035 0.90582 0.83232 0.82987 0.80850 0.74899 0.75197 0.89587 0.89479 0.76941 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.47 36.01 0.34 -0.20 16 2 C -0.07 -0.47 5.90 -104.43 -0.62 -1.08 16 3 C -0.10 -0.63 9.70 -39.61 -0.38 -1.01 16 4 C -0.07 -0.62 9.55 -39.55 -0.38 -1.00 16 5 C -0.03 -0.38 6.85 -79.98 -0.55 -0.93 16 6 N 0.03 0.42 4.45 33.95 0.15 0.57 16 7 O -0.17 -2.32 18.45 -29.46 -0.54 -2.86 16 8 O -0.15 -2.41 18.44 -29.46 -0.54 -2.96 16 9 C -0.06 -0.71 8.21 -39.39 -0.32 -1.03 16 10 C 0.18 1.80 6.29 -83.69 -0.53 1.27 16 11 N -0.68 -6.89 4.75 -14.22 -0.07 -6.95 16 12 C 0.70 9.91 8.41 -86.91 -0.73 9.18 16 13 O -0.57 -10.01 13.76 5.29 0.07 -9.94 16 14 N -0.71 -10.45 5.53 -66.41 -0.37 -10.82 16 15 C 0.13 2.14 6.15 -5.19 -0.03 2.10 16 16 C 0.43 9.21 7.85 -10.99 -0.09 9.12 16 17 O -0.60 -14.45 15.24 5.55 0.08 -14.36 16 18 N -0.55 -12.99 5.29 -10.96 -0.06 -13.05 16 19 C -0.31 -8.08 9.68 -14.93 -0.14 -8.23 16 20 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.31 13.05 55.50 0.72 -22.58 16 23 Si 0.93 20.01 29.55 -169.99 -5.02 14.99 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.08 0.37 7.17 -51.93 -0.37 0.00 16 30 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.15 1.02 7.61 -52.49 -0.40 0.62 16 32 H 0.17 2.60 5.75 -52.48 -0.30 2.30 16 33 H 0.41 2.86 7.87 -40.82 -0.32 2.54 16 34 H 0.41 5.69 7.46 -40.82 -0.30 5.39 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.12 7.90 -40.82 -0.32 8.79 16 38 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -32.48 343.18 -7.56 -40.04 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -3.64 Total: 13.97 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -3.52 Total: 8.79 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.38 Total: -52.83 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.93 Total: -30.12 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.48 -7.56 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.262 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds