Wall clock time and date at job start Fri Apr 10 2020 14:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38136 * 120.04011 * 2 1 4 4 C 1.38258 * 120.07096 * 180.27477 * 3 2 1 5 5 C 1.38307 * 120.13843 * 359.44734 * 4 3 2 6 6 N 1.48019 * 119.96603 * 180.29867 * 5 4 3 7 7 O 1.21808 * 119.99749 * 359.97438 * 6 5 4 8 8 O 1.21792 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.38089 * 120.07101 * 0.27156 * 5 4 3 10 10 C 1.38851 * 120.03134 * 179.72079 * 2 1 3 11 11 N 1.39945 * 120.06976 * 359.97438 * 10 2 1 12 12 C 1.34780 * 119.99688 * 145.30147 * 11 10 2 13 13 O 1.21583 * 120.00305 * 4.50354 * 12 11 10 14 14 N 1.34779 * 119.99752 * 184.49684 * 12 11 10 15 15 C 1.46504 * 119.99981 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46923 * 180.02562 * 15 14 12 17 17 O 1.21288 * 120.00071 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99634 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99878 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99666 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00304 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46956 * 89.99663 * 23 21 19 25 25 H 1.48497 * 109.47244 * 209.99678 * 23 21 19 26 26 H 1.48502 * 109.46995 * 330.00025 * 23 21 19 27 27 H 1.08998 * 109.47170 * 270.27980 * 1 2 3 28 28 H 1.08994 * 109.46760 * 30.27613 * 1 2 3 29 29 H 1.08993 * 109.47170 * 150.27817 * 1 2 3 30 30 H 1.07994 * 119.96528 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.92977 * 179.71837 * 4 3 2 32 32 H 1.08007 * 120.03716 * 179.97438 * 9 5 4 33 33 H 0.96991 * 120.00030 * 325.30192 * 11 10 2 34 34 H 0.97002 * 119.99806 * 0.02562 * 14 12 11 35 35 H 1.09005 * 109.46640 * 299.99662 * 15 14 12 36 36 H 1.08995 * 109.47148 * 59.99947 * 15 14 12 37 37 H 0.96998 * 120.00023 * 0.02562 * 18 16 15 38 38 H 0.96996 * 120.00509 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5811 1.1966 -0.0057 5 6 4.2762 0.0009 0.0000 6 7 5.7564 0.0062 0.0006 7 8 6.3616 1.0632 -0.0046 8 8 6.3691 -1.0464 0.0052 9 6 3.5908 -1.1979 0.0059 10 6 2.2019 -1.2021 0.0059 11 7 1.5043 -2.4153 0.0123 12 6 2.0001 -3.4812 -0.6469 13 8 3.0917 -3.4136 -1.1782 14 7 1.2860 -4.6220 -0.7171 15 6 1.8251 -5.7809 -1.4332 16 6 0.8384 -6.9178 -1.3637 17 8 -0.2115 -6.7744 -0.7737 18 7 1.1228 -8.0940 -1.9573 19 6 0.2254 -9.1285 -1.8936 20 1 -0.7095 -9.0008 -1.3682 21 6 0.5188 -10.3413 -2.5051 22 7 1.6562 -10.4964 -3.1448 23 14 -0.7042 -11.7507 -2.4190 24 1 -1.6301 -11.6740 -3.5776 25 1 0.0266 -13.0429 -2.4540 26 1 -1.4813 -11.6554 -1.1572 27 1 -0.3633 0.0050 1.0276 28 1 -0.3632 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 1.6586 2.1311 -0.0004 31 1 4.1194 2.1328 -0.0103 32 1 4.1342 -2.1313 0.0100 33 1 0.6641 -2.4890 0.4912 34 1 0.4150 -4.6758 -0.2935 35 1 1.9994 -5.5147 -2.4758 36 1 2.7652 -6.0865 -0.9741 37 1 1.9627 -8.2087 -2.4288 38 1 1.8612 -11.3431 -3.5713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348152200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:54 Heat of formation + Delta-G solvation = -63.027941 kcal Electronic energy + Delta-G solvation = -25803.529335 eV Core-core repulsion = 21648.621118 eV Total energy + Delta-G solvation = -4154.908217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.30144 -42.06998 -40.56148 -39.82171 -37.70581 -36.39317 -36.21159 -35.47448 -34.15884 -33.39561 -31.38148 -29.67687 -29.02208 -26.54850 -26.06443 -24.46829 -22.74243 -22.18458 -21.44172 -20.64471 -20.23230 -19.88351 -19.53905 -18.64119 -17.92493 -17.50500 -17.22785 -16.75532 -16.64738 -16.42744 -16.24276 -15.89194 -15.52923 -15.28576 -14.92973 -14.84719 -14.02221 -13.75224 -13.60982 -13.55502 -13.35286 -13.18705 -12.92280 -12.84169 -12.63223 -12.46876 -12.35759 -12.34241 -12.13696 -11.89195 -11.58116 -11.48275 -10.59127 -10.41321 -10.31982 -10.11359 -9.49386 -8.52386 -6.02864 -1.27644 -0.11336 0.24625 0.36011 1.22875 1.35535 1.43123 1.55517 1.74963 1.89448 2.26324 2.29559 2.83108 3.13671 3.15031 3.44137 3.55181 3.60784 3.78474 3.96835 4.15408 4.35396 4.39463 4.43819 4.53991 4.67285 4.77235 4.80875 5.01352 5.07996 5.12916 5.20527 5.22352 5.37127 5.56104 5.65868 5.90060 6.45256 6.45302 6.72331 7.01712 7.20399 7.42441 7.91359 8.64432 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002304 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.599673 B =12150.447515 C =13265.226905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 C -0.084 4.084 4 C -0.062 4.062 5 C -0.056 4.056 6 N 0.032 4.968 7 O -0.142 6.142 8 O -0.225 6.225 9 C -0.081 4.081 10 C 0.156 3.844 11 N -0.665 5.665 12 C 0.704 3.296 13 O -0.610 6.610 14 N -0.710 5.710 15 C 0.139 3.861 16 C 0.434 3.566 17 O -0.622 6.622 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.089 0.911 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.269 1.269 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.175 0.825 32 H 0.137 0.863 33 H 0.431 0.569 34 H 0.416 0.584 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 24.818 6.802 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.044 4.044 3 C -0.103 4.103 4 C -0.082 4.082 5 C -0.139 4.139 6 N 0.546 4.454 7 O -0.367 6.367 8 O -0.427 6.427 9 C -0.103 4.103 10 C 0.059 3.941 11 N -0.315 5.315 12 C 0.404 3.596 13 O -0.489 6.489 14 N -0.367 5.367 15 C 0.011 3.989 16 C 0.221 3.779 17 O -0.510 6.510 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.106 0.894 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.193 1.193 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.217 0.783 31 H 0.192 0.808 32 H 0.155 0.845 33 H 0.271 0.729 34 H 0.254 0.746 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.125 24.535 6.578 25.734 hybrid contribution 0.276 -1.509 -0.032 1.535 sum -3.849 23.025 6.546 24.245 Atomic orbital electron populations 1.21080 0.86642 1.05391 1.05155 1.20606 0.99151 0.90253 0.94415 1.21420 0.91220 0.99460 0.98171 1.21424 0.95720 0.96251 0.94772 1.21064 0.77574 0.97728 1.17581 1.43959 1.04835 0.99940 0.96693 1.94441 1.70317 1.20220 1.51711 1.94602 1.69794 1.21406 1.56849 1.21015 0.94714 0.97831 0.96716 1.17150 0.88863 0.85850 1.02227 1.42256 1.27153 1.07830 1.54275 1.15912 0.83675 0.80574 0.79445 1.90958 1.21677 1.83270 1.53016 1.44600 1.23190 1.10606 1.58299 1.20665 0.95717 0.83833 0.98719 1.20314 0.88811 0.84752 0.83991 1.90468 1.28321 1.83145 1.49101 1.41847 1.19787 1.10497 1.47292 1.19740 1.01039 0.91456 1.34301 0.89355 1.26143 0.98875 1.00900 0.95275 1.69680 1.23770 1.27684 1.34527 0.84868 0.77554 0.76630 0.78951 1.19516 1.19840 1.19305 0.87472 0.87573 0.91084 0.78307 0.80759 0.84480 0.72897 0.74570 0.88673 0.88789 0.76717 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.46 9.47 71.24 0.67 0.22 16 2 C -0.04 -0.43 5.90 -19.74 -0.12 -0.54 16 3 C -0.08 -0.62 9.70 22.25 0.22 -0.41 16 4 C -0.06 -0.85 9.55 22.29 0.21 -0.64 16 5 C -0.06 -1.32 6.85 36.36 0.25 -1.07 16 6 N 0.03 0.94 4.45 -46.51 -0.21 0.74 16 7 O -0.14 -3.93 18.45 18.88 0.35 -3.58 16 8 O -0.23 -7.97 18.44 18.90 0.35 -7.62 16 9 C -0.08 -2.10 8.21 22.39 0.18 -1.92 16 10 C 0.16 2.99 6.29 38.15 0.24 3.23 16 11 N -0.67 -12.77 4.75 -317.17 -1.51 -14.28 16 12 C 0.70 20.01 8.41 179.05 1.51 21.52 16 13 O -0.61 -22.19 13.76 -3.98 -0.05 -22.25 16 14 N -0.71 -20.74 5.53 -482.29 -2.67 -23.41 16 15 C 0.14 4.78 6.15 85.63 0.53 5.30 16 16 C 0.43 19.02 7.85 87.66 0.69 19.71 16 17 O -0.62 -30.22 15.24 -3.05 -0.05 -30.27 16 18 N -0.56 -27.22 5.29 -306.99 -1.62 -28.84 16 19 C -0.34 -18.03 9.68 84.04 0.81 -17.22 16 20 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 22 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 23 Si 1.00 40.93 29.55 68.60 2.03 42.96 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.11 -0.02 8.09 -2.39 -0.02 -0.04 16 29 H 0.07 0.40 7.17 -2.39 -0.02 0.39 16 30 H 0.20 -0.35 8.06 -2.91 -0.02 -0.37 16 31 H 0.18 1.63 7.61 -2.91 -0.02 1.60 16 32 H 0.14 4.59 5.75 -2.91 -0.02 4.58 16 33 H 0.43 5.12 7.87 -92.71 -0.73 4.39 16 34 H 0.42 11.30 7.46 -92.71 -0.69 10.61 16 35 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 36 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -74.88 343.18 1.58 -73.30 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.98 Total: 33.11 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 5.66 Total: 28.08 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.72 Total: -113.73 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: 0.60 Total: -63.72 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -74.88 1.58 -73.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.267 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds