Wall clock time and date at job start Fri Apr 10 2020 14:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48509 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47358 * 299.99988 * 3 2 1 6 6 H 1.48507 * 109.47125 * 60.00228 * 3 2 1 7 7 C 1.38815 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00280 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46752 * 324.99868 * 10 9 7 12 12 C 1.52991 * 109.47412 * 84.99851 * 10 9 7 13 13 O 1.42901 * 109.47196 * 64.99670 * 12 10 9 14 14 C 1.53001 * 109.46960 * 204.99936 * 10 9 7 15 15 N 1.46506 * 109.47287 * 54.99905 * 14 10 9 16 16 C 1.34774 * 119.99829 * 179.97438 * 15 14 10 17 17 O 1.21620 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.47336 * 119.99605 * 179.97438 * 16 15 14 19 19 N 1.35225 * 126.56481 * 0.02867 * 18 16 15 20 20 C 1.29992 * 108.84321 * 179.73860 * 19 18 16 21 21 O 1.33989 * 109.70470 * 359.97438 * 20 19 18 22 22 C 1.34783 * 108.10674 * 0.02562 * 21 20 19 23 23 C 1.47752 * 126.76468 * 179.97438 * 22 21 20 24 24 C 1.42484 * 126.97233 * 0.02562 * 23 22 21 25 25 C 1.35181 * 103.92975 * 179.97438 * 24 23 22 26 26 O 1.34073 * 106.74258 * 0.02562 * 25 24 23 27 27 N 1.20911 * 111.89303 * 359.70527 * 26 25 24 28 28 H 0.96999 * 119.99959 * 0.02562 * 1 2 3 29 29 H 0.97006 * 119.99698 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47361 * 185.00572 * 12 10 9 31 31 H 1.09009 * 109.46988 * 305.00053 * 12 10 9 32 32 H 0.96698 * 114.00102 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47340 * 294.99931 * 14 10 9 34 34 H 1.09001 * 109.47158 * 174.99541 * 14 10 9 35 35 H 0.97005 * 119.99637 * 359.97438 * 15 14 10 36 36 H 1.07997 * 125.14477 * 180.02562 * 20 19 18 37 37 H 1.08006 * 128.03615 * 359.97438 * 24 23 22 38 38 H 1.08003 * 126.62641 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5903 12 6 2.4209 -4.0363 1.4354 13 8 1.2261 -4.2895 2.1773 14 6 1.1813 -4.7519 -0.6124 15 7 0.7356 -4.3346 -1.9442 16 6 -0.0528 -5.1465 -2.6760 17 8 -0.3940 -6.2257 -2.2310 18 6 -0.5014 -4.7265 -4.0151 19 7 -0.2035 -3.5630 -4.6364 20 6 -0.7738 -3.5527 -5.8045 21 8 -1.4541 -4.6928 -5.9851 22 6 -1.3032 -5.4502 -4.8804 23 6 -1.8802 -6.7890 -4.6405 24 6 -2.7058 -7.5380 -5.5281 25 6 -2.9629 -8.6783 -4.8491 26 8 -2.3311 -8.5771 -3.6709 27 7 -1.7319 -7.5318 -3.5690 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0023 30 1 3.0415 -4.9324 1.4290 31 1 2.9702 -3.2173 1.8998 32 1 1.3806 -4.5367 3.0994 33 1 0.3133 -4.9200 0.0250 34 1 1.7562 -5.6743 -0.6942 35 1 1.0081 -3.4739 -2.2992 36 1 -0.7084 -2.7474 -6.5211 37 1 -3.0469 -7.2594 -6.5143 38 1 -3.5617 -9.5100 -5.1899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676598433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:04 Heat of formation + Delta-G solvation = 5.340059 kcal Electronic energy + Delta-G solvation = -26846.099119 eV Core-core repulsion = 22694.155561 eV Total energy + Delta-G solvation = -4151.943558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.01837 -44.50579 -40.59580 -38.61988 -36.43553 -36.14627 -35.53149 -35.11197 -33.13876 -32.80336 -31.18644 -30.10755 -27.33291 -25.76619 -25.26104 -24.88671 -23.51053 -22.57090 -21.65680 -21.21904 -19.79260 -19.36405 -18.75852 -18.67777 -18.17557 -17.87677 -17.38217 -17.29598 -16.63621 -16.29978 -16.11441 -15.58938 -15.48442 -15.25910 -14.86572 -14.61844 -14.48350 -14.32835 -14.09170 -13.70150 -13.08418 -12.79999 -12.68158 -12.60616 -12.43735 -12.23666 -12.16407 -11.93771 -11.85974 -11.74353 -11.19066 -10.96929 -10.73362 -10.68528 -10.13252 -9.75042 -9.01860 -7.90004 -5.19961 -0.59995 0.72601 0.97745 1.06566 1.38610 1.48669 1.49333 1.59130 2.06718 2.25592 2.45881 2.57337 3.02212 3.10034 3.34928 3.42349 3.59329 3.68015 3.87019 3.97924 4.01295 4.15290 4.35908 4.40766 4.46793 4.52836 4.58178 4.73074 4.82059 4.97557 5.01977 5.04558 5.18686 5.43612 5.53538 6.22284 6.27947 6.55201 7.06328 7.11208 7.30684 7.35529 8.07048 8.33248 9.33295 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.003561 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.460942 B = 7860.100747 C = 9328.954564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.299 1.299 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.161 3.839 11 H 0.077 0.923 12 C 0.067 3.933 13 O -0.584 6.584 14 C 0.132 3.868 15 N -0.698 5.698 16 C 0.573 3.427 17 O -0.532 6.532 18 C -0.056 4.056 19 N -0.496 5.496 20 C 0.218 3.782 21 O -0.176 6.176 22 C 0.087 3.913 23 C 0.021 3.979 24 C -0.212 4.212 25 C -0.042 4.042 26 O 0.121 5.879 27 N -0.315 5.315 28 H 0.248 0.752 29 H 0.371 0.629 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.386 0.614 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.411 0.589 36 H 0.318 0.682 37 H 0.207 0.793 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -16.678 -14.862 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.227 1.227 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.052 3.948 11 H 0.095 0.905 12 C -0.014 4.014 13 O -0.391 6.391 14 C 0.008 3.992 15 N -0.349 5.349 16 C 0.358 3.642 17 O -0.409 6.409 18 C -0.179 4.179 19 N -0.223 5.223 20 C -0.010 4.010 21 O -0.061 6.061 22 C 0.029 3.971 23 C -0.133 4.133 24 C -0.234 4.234 25 C -0.121 4.121 26 O 0.040 5.960 27 N -0.010 5.010 28 H 0.057 0.943 29 H 0.202 0.798 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.234 0.766 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.332 0.668 37 H 0.224 0.776 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -2.533 -16.464 -13.717 21.579 hybrid contribution -0.341 1.351 -0.369 1.442 sum -2.874 -15.113 -14.085 20.858 Atomic orbital electron populations 1.69876 1.06796 1.25667 1.59488 1.25540 0.96184 1.01017 1.03824 0.85092 0.78370 0.80033 0.76313 1.18714 1.22246 1.22696 1.19661 0.91480 0.84821 1.40865 0.90025 1.42478 1.05293 1.00317 1.88190 1.20844 0.94925 0.85277 0.93752 0.90524 1.22841 0.86530 0.98711 0.93289 1.86532 1.32839 1.92044 1.27651 1.21444 0.98576 0.97359 0.81816 1.45808 1.49934 1.21534 1.17602 1.17125 0.79274 0.84464 0.83309 1.90906 1.56822 1.21853 1.71283 1.21901 1.04725 0.93268 0.98025 1.70534 1.24185 1.19737 1.07867 1.29466 0.88395 0.87727 0.95383 1.84400 1.58569 1.27265 1.35860 1.19886 0.99567 0.91711 0.85936 1.20577 1.04740 0.93346 0.94623 1.23187 1.02195 0.94320 1.03683 1.27018 0.99016 1.01981 0.84086 1.84974 1.46433 1.29254 1.35328 1.75152 1.11801 0.94137 1.19944 0.94342 0.79788 0.91444 0.94260 0.76619 0.92930 0.90158 0.75265 0.66772 0.77625 0.70742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.58 13.06 21.65 0.28 -60.29 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 7 C -0.24 -12.94 9.93 84.04 0.83 -12.11 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.72 -36.93 4.51 -322.95 -1.46 -38.38 16 10 C 0.16 6.49 2.84 44.99 0.13 6.62 16 11 H 0.08 2.91 8.08 -2.39 -0.02 2.89 16 12 C 0.07 2.34 6.86 71.98 0.49 2.83 16 13 O -0.58 -21.48 12.64 -148.98 -1.88 -23.37 16 14 C 0.13 5.23 5.12 86.38 0.44 5.67 16 15 N -0.70 -28.87 5.38 -466.45 -2.51 -31.38 16 16 C 0.57 24.07 7.81 86.64 0.68 24.74 16 17 O -0.53 -23.94 13.41 -4.09 -0.05 -23.99 16 18 C -0.06 -2.08 7.05 41.05 0.29 -1.79 16 19 N -0.50 -16.15 11.00 -304.13 -3.35 -19.50 16 20 C 0.22 4.56 13.16 130.51 1.72 6.27 16 21 O -0.18 -4.06 10.75 -4.25 -0.05 -4.11 16 22 C 0.09 2.71 7.37 24.83 0.18 2.89 16 23 C 0.02 0.62 7.12 42.81 0.30 0.92 16 24 C -0.21 -3.59 11.15 22.62 0.25 -3.34 16 25 C -0.04 -0.53 12.27 67.11 0.82 0.30 16 26 O 0.12 2.90 11.18 71.33 0.80 3.69 16 27 N -0.31 -10.43 8.71 -49.48 -0.43 -10.86 16 28 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.37 21.53 7.80 -92.70 -0.72 20.80 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.39 9.99 9.12 -74.06 -0.68 9.31 16 33 H 0.05 2.35 7.39 -2.39 -0.02 2.33 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.41 17.84 7.87 -92.70 -0.73 17.11 16 36 H 0.32 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.28 -0.15 8.06 -2.91 -0.02 -0.18 16 Total: -1.00 -86.62 342.68 -0.97 -87.59 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: -0.97 Total: 43.03 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 6.61 Total: 29.27 kcal Atomic # 7 Polarization: -152.95 SS G_CDS: -7.46 Total: -160.41 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.19 Total: -47.77 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -86.62 -0.97 -87.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.930 kcal (2) G-P(sol) polarization free energy of solvation -86.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds