Wall clock time and date at job start Fri Apr 10 2020 14:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21622 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.47341 * 119.99751 * 180.02562 * 16 15 14 19 19 N 1.35222 * 126.56266 * 0.02562 * 18 16 15 20 20 C 1.29993 * 108.84156 * 179.97438 * 19 18 16 21 21 O 1.33984 * 109.70408 * 0.02562 * 20 19 18 22 22 C 1.34779 * 108.10805 * 359.76409 * 21 20 19 23 23 C 1.47756 * 126.76782 * 180.24655 * 22 21 20 24 24 C 1.42489 * 126.96874 * 0.14418 * 23 22 21 25 25 C 1.35180 * 103.92613 * 179.97438 * 24 23 22 26 26 O 1.34072 * 106.74160 * 359.97438 * 25 24 23 27 27 N 1.20900 * 111.89772 * 359.74399 * 26 25 24 28 28 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 31 31 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 32 32 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 34 34 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 35 35 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 36 36 H 1.07995 * 125.14443 * 180.02562 * 20 19 18 37 37 H 1.08001 * 128.03520 * 359.92179 * 24 23 22 38 38 H 1.08005 * 126.62660 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5624 -3.2046 -0.5963 12 6 4.2636 -2.9798 1.4281 13 8 5.0826 -2.0743 2.1707 14 6 5.4969 -2.2569 -0.6209 15 7 5.3544 -1.6578 -1.9502 16 6 6.4495 -1.3784 -2.6844 17 8 7.5561 -1.6240 -2.2437 18 6 6.3061 -0.7754 -4.0211 19 7 5.1476 -0.4486 -4.6373 20 6 5.4206 0.0598 -5.8021 21 8 6.7477 0.0822 -5.9855 22 6 7.3314 -0.4305 -4.8842 23 6 8.7805 -0.5942 -4.6461 24 6 9.8396 -0.2402 -5.5311 25 6 10.9579 -0.5861 -4.8550 26 8 10.5575 -1.0945 -3.6807 27 7 9.3532 -1.0891 -3.5742 28 1 -0.4851 0.8401 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 3.2812 -3.0476 1.8953 31 1 4.7294 -3.9652 1.4169 32 1 5.2222 -2.3348 3.0914 33 1 6.0785 -1.5915 0.0170 34 1 6.0080 -3.2158 -0.7076 35 1 4.4718 -1.4623 -2.3019 36 1 4.6885 0.4109 -6.5142 37 1 9.7660 0.2011 -6.5141 38 1 11.9770 -0.4738 -5.1947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676598434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:07 Heat of formation + Delta-G solvation = 43.035751 kcal Electronic energy + Delta-G solvation = -26966.854626 eV Core-core repulsion = 22816.545676 eV Total energy + Delta-G solvation = -4150.308950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.16204 -43.55091 -39.23079 -37.20195 -35.16920 -34.99766 -34.60192 -33.44230 -32.03558 -31.46123 -30.16263 -28.86377 -26.06705 -24.34875 -23.97454 -23.20679 -22.65975 -21.57417 -20.19388 -20.03085 -18.81863 -18.02641 -17.85241 -17.46115 -16.92528 -16.83944 -16.39449 -15.82546 -15.49026 -14.98858 -14.66294 -14.37449 -14.19755 -13.79386 -13.52553 -13.41361 -13.23139 -12.99462 -12.76823 -12.35340 -11.67247 -11.57616 -11.48591 -11.25511 -10.95444 -10.94112 -10.82275 -10.65415 -10.07001 -9.99673 -9.79532 -9.59980 -9.42361 -8.95883 -8.90541 -8.55692 -7.29693 -5.78275 -3.14001 0.40637 1.34824 1.96585 1.98596 2.29054 3.01949 3.31531 3.42007 3.48073 3.50041 3.51063 3.83202 3.97708 4.20629 4.61255 4.74928 4.81325 4.86249 4.93056 5.04665 5.25531 5.29804 5.41140 5.50564 5.51829 5.58819 5.83490 5.88887 5.96353 5.97933 6.26475 6.42365 6.65920 6.83276 7.22699 7.91116 7.95135 8.02886 8.15198 8.40632 8.50032 9.18818 9.91825 10.11758 11.39515 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.003892 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.213056 B = 7191.711576 C = 8429.094383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.012 3.988 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.172 3.828 11 H 0.075 0.925 12 C 0.060 3.940 13 O -0.564 6.564 14 C 0.117 3.883 15 N -0.700 5.700 16 C 0.580 3.420 17 O -0.507 6.507 18 C -0.018 4.018 19 N -0.453 5.453 20 C 0.190 3.810 21 O -0.188 6.188 22 C 0.084 3.916 23 C 0.056 3.944 24 C -0.212 4.212 25 C -0.067 4.067 26 O 0.125 5.875 27 N -0.260 5.260 28 H 0.259 0.741 29 H 0.366 0.634 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.366 0.634 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.416 0.584 36 H 0.263 0.737 37 H 0.176 0.824 38 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.913 -2.315 -12.970 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.061 3.939 11 H 0.093 0.907 12 C -0.021 4.021 13 O -0.368 6.368 14 C -0.007 4.007 15 N -0.352 5.352 16 C 0.364 3.636 17 O -0.382 6.382 18 C -0.143 4.143 19 N -0.181 5.181 20 C -0.037 4.037 21 O -0.074 6.074 22 C 0.027 3.973 23 C -0.100 4.100 24 C -0.234 4.234 25 C -0.147 4.147 26 O 0.045 5.955 27 N 0.045 4.955 28 H 0.069 0.931 29 H 0.199 0.801 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.211 0.789 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.278 0.722 37 H 0.194 0.806 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 19.301 -2.803 -11.845 22.819 hybrid contribution 0.485 1.625 -0.904 1.922 sum 19.786 -1.178 -12.749 23.567 Atomic orbital electron populations 1.69697 1.05102 1.25877 1.57218 1.24604 0.95124 0.97126 1.01617 0.86617 0.79524 0.85029 0.77900 1.21001 1.21818 1.20042 1.19046 0.80404 0.94703 1.43580 0.89132 1.42727 1.03899 1.01797 1.89685 1.20567 0.90438 0.90647 0.92254 0.90712 1.22990 0.93793 0.90436 0.94899 1.86533 1.72195 1.51963 1.26106 1.21650 0.98532 0.98355 0.82187 1.45837 1.09508 1.62041 1.17817 1.16756 0.85319 0.79256 0.82307 1.90942 1.24316 1.52533 1.70414 1.22122 0.87589 1.06331 0.98250 1.70593 1.27806 1.13594 1.06083 1.28233 0.80032 0.99301 0.96181 1.84365 1.22804 1.62906 1.37286 1.19668 0.90558 1.01116 0.85969 1.20174 0.89975 1.06468 0.93344 1.22785 0.90369 1.07243 1.02962 1.25968 1.01634 1.00363 0.86748 1.85045 1.17518 1.59186 1.33740 1.75133 0.88824 1.13601 1.17987 0.93055 0.80070 0.92750 0.95078 0.78927 0.90425 0.91469 0.74643 0.72174 0.80648 0.76339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 22.82 27.74 -169.99 -4.71 18.10 16 4 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -7.03 6.52 56.52 0.37 -6.66 16 7 C -0.25 -6.84 10.41 -15.06 -0.16 -7.00 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -17.48 4.31 -53.43 -0.23 -17.71 16 10 C 0.17 3.30 2.84 -67.93 -0.19 3.11 16 11 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 12 C 0.06 1.04 6.86 37.16 0.25 1.29 16 13 O -0.56 -9.85 12.64 -35.23 -0.45 -10.30 16 14 C 0.12 2.12 5.12 -4.04 -0.02 2.10 16 15 N -0.70 -13.07 5.38 -61.41 -0.33 -13.40 16 16 C 0.58 10.97 7.81 -12.56 -0.10 10.87 16 17 O -0.51 -10.32 13.41 5.26 0.07 -10.25 16 18 C -0.02 -0.31 7.05 -82.61 -0.58 -0.89 16 19 N -0.45 -6.97 11.00 -11.16 -0.12 -7.10 16 20 C 0.19 2.04 13.16 51.98 0.68 2.72 16 21 O -0.19 -2.20 10.75 5.24 0.06 -2.14 16 22 C 0.08 1.24 7.37 -35.64 -0.26 0.97 16 23 C 0.06 0.78 7.12 -82.60 -0.59 0.19 16 24 C -0.21 -1.92 11.15 -39.03 -0.44 -2.36 16 25 C -0.07 -0.49 12.27 29.64 0.36 -0.12 16 26 O 0.13 1.46 11.18 17.10 0.19 1.66 16 27 N -0.26 -4.02 8.70 33.27 0.29 -3.73 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.37 9.06 5.66 -40.82 -0.23 8.83 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.37 4.56 9.12 45.56 0.42 4.97 16 33 H 0.08 1.54 7.39 -51.93 -0.38 1.16 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.42 8.09 7.87 -40.82 -0.32 7.76 16 36 H 0.26 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.22 0.42 8.06 -52.48 -0.42 0.00 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -38.02 339.56 -3.54 -41.57 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -3.07 Total: 15.34 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.13 Total: 11.12 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: 0.38 Total: -70.22 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.13 Total: -21.03 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -38.02 -3.54 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.601 kcal (2) G-P(sol) polarization free energy of solvation -38.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds