Wall clock time and date at job start Fri Apr 10 2020 14:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21622 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.47341 * 119.99751 * 180.02562 * 16 15 14 19 19 N 1.35222 * 126.56266 * 0.02562 * 18 16 15 20 20 C 1.29993 * 108.84156 * 179.97438 * 19 18 16 21 21 O 1.33984 * 109.70408 * 0.02562 * 20 19 18 22 22 C 1.34779 * 108.10805 * 359.76409 * 21 20 19 23 23 C 1.47756 * 126.76782 * 180.24655 * 22 21 20 24 24 C 1.42489 * 126.96874 * 0.14418 * 23 22 21 25 25 C 1.35180 * 103.92613 * 179.97438 * 24 23 22 26 26 O 1.34072 * 106.74160 * 359.97438 * 25 24 23 27 27 N 1.20900 * 111.89772 * 359.74399 * 26 25 24 28 28 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 31 31 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 32 32 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 34 34 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 35 35 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 36 36 H 1.07995 * 125.14443 * 180.02562 * 20 19 18 37 37 H 1.08001 * 128.03520 * 359.92179 * 24 23 22 38 38 H 1.08005 * 126.62660 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5624 -3.2046 -0.5963 12 6 4.2636 -2.9798 1.4281 13 8 5.0826 -2.0743 2.1707 14 6 5.4969 -2.2569 -0.6209 15 7 5.3544 -1.6578 -1.9502 16 6 6.4495 -1.3784 -2.6844 17 8 7.5561 -1.6240 -2.2437 18 6 6.3061 -0.7754 -4.0211 19 7 5.1476 -0.4486 -4.6373 20 6 5.4206 0.0598 -5.8021 21 8 6.7477 0.0822 -5.9855 22 6 7.3314 -0.4305 -4.8842 23 6 8.7805 -0.5942 -4.6461 24 6 9.8396 -0.2402 -5.5311 25 6 10.9579 -0.5861 -4.8550 26 8 10.5575 -1.0945 -3.6807 27 7 9.3532 -1.0891 -3.5742 28 1 -0.4851 0.8401 0.0004 29 1 3.8646 -0.3620 0.0004 30 1 3.2812 -3.0476 1.8953 31 1 4.7294 -3.9652 1.4169 32 1 5.2222 -2.3348 3.0914 33 1 6.0785 -1.5915 0.0170 34 1 6.0080 -3.2158 -0.7076 35 1 4.4718 -1.4623 -2.3019 36 1 4.6885 0.4109 -6.5142 37 1 9.7660 0.2011 -6.5141 38 1 11.9770 -0.4738 -5.1947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676598434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:06 Heat of formation + Delta-G solvation = 7.743540 kcal Electronic energy + Delta-G solvation = -26968.385011 eV Core-core repulsion = 22816.545676 eV Total energy + Delta-G solvation = -4151.839336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.03404 -44.53898 -40.65742 -38.72742 -36.50809 -36.18334 -35.56388 -35.16983 -33.40045 -32.82052 -31.28797 -30.56222 -27.39059 -25.58358 -25.17557 -24.88246 -23.53265 -22.59544 -21.74517 -21.27872 -20.06690 -19.56257 -18.77388 -18.70716 -18.31620 -17.90477 -17.41252 -17.30537 -16.68590 -16.42077 -16.11924 -15.75880 -15.52172 -15.06087 -14.94897 -14.63557 -14.57833 -14.36950 -14.24078 -14.10968 -13.24457 -12.91040 -12.69361 -12.63637 -12.46241 -12.42371 -12.18854 -11.97157 -11.88269 -11.82077 -11.23461 -11.03447 -10.77497 -10.69939 -10.18581 -9.78677 -9.35566 -8.03575 -5.35280 -0.62823 0.70709 0.93845 1.03981 1.34496 1.35967 1.36490 1.42788 2.01786 2.20643 2.43782 2.45514 2.98625 3.07145 3.27720 3.32516 3.42978 3.64487 3.66849 3.89042 3.98311 4.13044 4.33848 4.34072 4.44670 4.48385 4.57320 4.71434 4.74848 4.93964 4.98771 5.02943 5.11921 5.38133 5.75146 6.17934 6.20498 6.49859 7.00732 7.06377 7.06615 7.28205 7.80349 7.99467 9.17545 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.003892 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.213056 B = 7191.711576 C = 8429.094383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.050 4.050 3 Si 0.940 3.060 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.222 4.222 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.166 3.834 11 H 0.080 0.920 12 C 0.068 3.932 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.575 3.425 17 O -0.528 6.528 18 C -0.058 4.058 19 N -0.498 5.498 20 C 0.219 3.781 21 O -0.175 6.175 22 C 0.089 3.911 23 C 0.021 3.979 24 C -0.212 4.212 25 C -0.041 4.041 26 O 0.121 5.879 27 N -0.314 5.314 28 H 0.257 0.743 29 H 0.361 0.639 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.388 0.612 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.411 0.589 36 H 0.317 0.683 37 H 0.206 0.794 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.471 -1.879 -14.789 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.242 4.242 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.352 4.352 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.057 3.943 11 H 0.098 0.902 12 C -0.013 4.013 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.360 3.640 17 O -0.404 6.404 18 C -0.181 4.181 19 N -0.225 5.225 20 C -0.009 4.009 21 O -0.061 6.061 22 C 0.031 3.969 23 C -0.133 4.133 24 C -0.234 4.234 25 C -0.120 4.120 26 O 0.040 5.960 27 N -0.009 5.009 28 H 0.066 0.934 29 H 0.194 0.806 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.332 0.668 37 H 0.223 0.777 38 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 21.896 -2.411 -13.636 25.907 hybrid contribution -0.172 1.409 -0.432 1.484 sum 21.724 -1.002 -14.069 25.901 Atomic orbital electron populations 1.69831 1.06612 1.26369 1.59959 1.25212 0.95776 1.00162 1.03028 0.85636 0.78232 0.81389 0.77795 1.20711 1.22185 1.19627 1.19039 0.82031 0.93639 1.40522 0.91214 1.42717 1.02543 1.03319 1.89820 1.20827 0.90557 0.88843 0.94081 0.90239 1.22770 0.93589 0.92031 0.92888 1.86477 1.71963 1.52625 1.28022 1.21505 0.97444 0.98721 0.81788 1.45860 1.09323 1.62414 1.17932 1.17094 0.84873 0.78869 0.83174 1.90921 1.24813 1.53430 1.71252 1.21905 0.89129 1.08864 0.98211 1.70537 1.27860 1.15970 1.08150 1.29458 0.80173 0.95922 0.95306 1.84407 1.23201 1.62439 1.36022 1.19890 0.91018 0.99993 0.86006 1.20573 0.90416 1.07734 0.94559 1.23187 0.89137 1.07343 1.03752 1.27009 1.03516 0.97172 0.84345 1.84970 1.16293 1.59131 1.35595 1.75135 0.90346 1.15672 1.19795 0.93388 0.80625 0.94404 0.91069 0.76314 0.92105 0.89712 0.75222 0.66836 0.77686 0.70811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.26 13.97 21.65 0.30 -61.96 16 2 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 3 Si 0.94 47.98 27.74 68.60 1.90 49.89 16 4 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 6 H -0.27 -13.46 6.52 99.48 0.65 -12.81 16 7 C -0.22 -12.40 10.41 84.03 0.87 -11.53 16 8 H 0.07 4.16 8.06 -2.91 -0.02 4.13 16 9 N -0.74 -35.16 4.31 -322.94 -1.39 -36.55 16 10 C 0.17 6.30 2.84 44.99 0.13 6.43 16 11 H 0.08 2.96 8.08 -2.39 -0.02 2.94 16 12 C 0.07 2.25 6.86 71.98 0.49 2.74 16 13 O -0.58 -19.56 12.64 -148.98 -1.88 -21.44 16 14 C 0.13 4.68 5.12 86.38 0.44 5.13 16 15 N -0.70 -26.78 5.38 -466.45 -2.51 -29.29 16 16 C 0.57 22.35 7.81 86.64 0.68 23.03 16 17 O -0.53 -22.15 13.41 -4.10 -0.05 -22.20 16 18 C -0.06 -2.00 7.05 41.05 0.29 -1.71 16 19 N -0.50 -15.10 11.00 -304.13 -3.35 -18.44 16 20 C 0.22 4.19 13.16 130.51 1.72 5.91 16 21 O -0.18 -3.75 10.75 -4.16 -0.04 -3.79 16 22 C 0.09 2.58 7.37 24.83 0.18 2.77 16 23 C 0.02 0.58 7.12 42.81 0.30 0.88 16 24 C -0.21 -3.28 11.15 22.62 0.25 -3.02 16 25 C -0.04 -0.46 12.27 67.11 0.82 0.36 16 26 O 0.12 2.69 11.18 71.35 0.80 3.48 16 27 N -0.31 -9.74 8.70 -49.49 -0.43 -10.17 16 28 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 29 H 0.36 17.85 5.66 -92.71 -0.52 17.33 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.39 8.95 9.12 -74.06 -0.68 8.28 16 33 H 0.06 2.43 7.39 -2.39 -0.02 2.41 16 34 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 35 H 0.41 16.37 7.87 -92.71 -0.73 15.64 16 36 H 0.32 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.28 -0.48 8.06 -2.91 -0.02 -0.50 16 Total: -1.00 -87.18 339.56 -0.83 -88.01 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.83 Total: 33.95 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 6.65 Total: 28.51 kcal Atomic # 7 Polarization: -149.04 SS G_CDS: -7.38 Total: -156.42 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.18 Total: -43.94 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.90 Total: 49.89 kcal Total: -87.18 -0.83 -88.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.754 kcal (2) G-P(sol) polarization free energy of solvation -87.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds