Wall clock time and date at job start Fri Apr 10 2020 14:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.46827 * 2 1 4 4 C 1.36482 * 127.12554 * 90.00184 * 3 2 1 5 5 C 1.50696 * 126.31178 * 359.97438 * 4 3 2 6 6 N 1.46506 * 109.47148 * 269.71136 * 5 4 3 7 7 C 1.39814 * 119.99930 * 179.72534 * 6 5 4 8 8 C 1.38873 * 120.05412 * 359.72508 * 7 6 5 9 9 C 1.38128 * 119.95493 * 179.76553 * 8 7 6 10 10 C 1.38463 * 120.04315 * 0.48822 * 9 8 7 11 11 F 1.35103 * 119.94480 * 179.74622 * 10 9 8 12 12 C 1.38460 * 120.10022 * 359.76987 * 10 9 8 13 13 C 1.38110 * 120.05361 * 359.97438 * 12 10 9 14 14 N 1.30493 * 107.37233 * 179.72238 * 4 3 2 15 15 N 1.28538 * 110.05751 * 0.23960 * 14 4 3 16 16 C 1.31391 * 109.79793 * 359.97438 * 15 14 4 17 17 S 1.76203 * 126.49320 * 180.02562 * 16 15 14 18 18 C 1.76203 * 99.99835 * 359.97438 * 17 16 15 19 19 H 1.08002 * 119.99943 * 359.97438 * 18 17 16 20 20 C 1.38669 * 120.00015 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99716 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47220 * 120.00017 * 22 20 18 25 25 H 1.48499 * 109.47143 * 239.99844 * 22 20 18 26 26 H 1.09003 * 109.47370 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47621 * 300.00341 * 1 2 3 28 28 H 1.08999 * 109.47145 * 60.00447 * 1 2 3 29 29 H 1.08997 * 109.47229 * 239.99684 * 2 1 3 30 30 H 1.08999 * 109.47145 * 119.99553 * 2 1 3 31 31 H 1.09001 * 109.47545 * 149.71608 * 5 4 3 32 32 H 1.08998 * 109.47669 * 29.71551 * 5 4 3 33 33 H 0.97005 * 119.99811 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.02374 * 0.02562 * 8 7 6 35 35 H 1.08002 * 119.97514 * 180.23921 * 9 8 7 36 36 H 1.08004 * 119.97032 * 179.97438 * 12 10 9 37 37 H 1.08000 * 120.03013 * 179.97438 * 13 12 10 38 38 H 0.96999 * 119.99426 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2928 2.1578 1.0882 5 6 2.1492 1.7530 2.5326 6 7 0.8027 2.0889 3.0024 7 6 0.4294 1.8008 4.3186 8 6 1.3321 1.1910 5.1799 9 6 0.9627 0.9117 6.4813 10 6 -0.3099 1.2300 6.9242 11 9 -0.6708 0.9512 8.1959 12 6 -1.2134 1.8331 6.0656 13 6 -0.8466 2.1191 4.7651 14 7 2.7078 3.3138 0.6472 15 7 2.7088 3.3206 -0.6382 16 6 2.2916 2.1595 -1.0898 17 16 2.1225 1.6919 -2.7802 18 6 2.6548 3.1778 -3.5634 19 1 2.9585 4.0245 -2.9655 20 6 2.6828 3.2606 -4.9473 21 7 2.3113 2.2292 -5.6759 22 14 3.2478 4.8357 -5.7775 23 1 3.6087 5.8384 -4.7433 24 1 4.4327 4.5505 -6.6261 25 1 2.1506 5.3705 -6.6232 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8868 2.2843 3.1340 32 1 2.3094 0.6790 2.6267 33 1 0.1688 2.5072 2.3989 34 1 2.3237 0.9392 4.8338 35 1 1.6658 0.4410 7.1525 36 1 -2.2057 2.0802 6.4131 37 1 -1.5517 2.5891 4.0956 38 1 2.3312 2.2870 -6.6440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004130386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:54 Heat of formation + Delta-G solvation = 33.374433 kcal Electronic energy + Delta-G solvation = -23430.426357 eV Core-core repulsion = 19734.824121 eV Total energy + Delta-G solvation = -3695.602236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.096 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -49.63725 -43.75365 -40.23248 -36.94805 -36.30306 -34.74236 -32.49216 -31.96203 -31.46307 -29.65751 -27.85571 -26.90652 -25.14864 -23.98009 -23.39944 -22.69318 -21.57530 -19.89269 -18.86236 -18.35955 -17.81017 -17.55544 -17.09882 -16.95269 -16.71440 -16.38970 -15.89997 -15.52543 -15.30829 -15.07540 -14.88597 -14.46563 -14.15791 -14.02596 -13.74455 -13.57718 -13.48595 -13.32295 -13.07763 -13.00862 -12.96557 -12.38741 -12.24530 -11.99961 -11.81760 -11.56708 -11.50080 -11.09669 -10.93369 -10.80122 -10.73421 -10.00535 -8.73451 -8.53457 -8.34738 -6.30917 0.36903 0.45997 0.64705 0.73745 1.36720 1.36801 1.53239 1.73572 1.81655 2.12147 2.54511 2.78969 2.87607 3.00913 3.22411 3.55357 3.66584 3.86760 3.92564 4.01847 4.04078 4.28986 4.33640 4.38771 4.46134 4.51105 4.71116 4.75607 4.77872 4.96026 5.03058 5.14654 5.19399 5.26335 5.34530 5.35046 5.46466 5.82336 5.93785 6.21349 6.25649 6.59777 6.95458 7.76464 8.55902 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.031503 B = 0.002445 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.586898 B =11450.929321 C =11772.003672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.458 5.458 4 C 0.148 3.852 5 C 0.231 3.769 6 N -0.737 5.737 7 C 0.210 3.790 8 C -0.173 4.173 9 C -0.102 4.102 10 C 0.009 3.991 11 F -0.159 7.159 12 C -0.105 4.105 13 C -0.172 4.172 14 N -0.315 5.315 15 N -0.351 5.351 16 C 0.161 3.839 17 S 0.123 5.877 18 C -0.559 4.559 19 H 0.083 0.917 20 C 0.034 3.966 21 N -0.902 5.902 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.265 1.265 25 H -0.266 1.266 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.401 0.599 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -8.476 19.967 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.154 5.154 4 C -0.123 4.123 5 C 0.105 3.895 6 N -0.368 5.368 7 C 0.107 3.893 8 C -0.196 4.196 9 C -0.122 4.122 10 C -0.011 4.011 11 F -0.138 7.138 12 C -0.125 4.125 13 C -0.195 4.195 14 N -0.155 5.155 15 N -0.196 5.196 16 C -0.213 4.213 17 S 0.354 5.646 18 C -0.707 4.707 19 H 0.101 0.899 20 C -0.173 4.173 21 N -0.538 5.538 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.190 1.190 25 H -0.190 1.190 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.236 0.764 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.154 -8.245 19.260 21.575 hybrid contribution -0.037 1.057 -0.363 1.118 sum -5.191 -7.189 18.897 20.874 Atomic orbital electron populations 1.22109 0.92736 1.04814 1.02281 1.22273 0.96908 0.77037 1.06437 1.46647 1.50423 1.14622 1.03696 1.25161 1.05275 0.89160 0.92707 1.19527 0.86054 1.01859 0.82035 1.44635 1.13777 1.68404 1.09946 1.17925 0.93362 0.93688 0.84354 1.20713 1.00786 1.05116 0.92956 1.21098 0.94704 0.99717 0.96645 1.17740 0.95831 1.07547 0.80029 1.91432 1.92432 1.92524 1.37380 1.21029 1.00055 0.98319 0.93083 1.20600 0.95806 1.06712 0.96356 1.73858 1.18443 1.19419 1.03827 1.74707 1.23255 1.18887 1.02758 1.28030 1.02921 0.91444 0.98884 1.83042 1.79492 1.20449 0.81666 1.23337 1.52035 1.00919 0.94452 0.89867 1.25868 0.93927 1.01235 0.96271 1.69997 1.45206 1.31363 1.07270 0.84999 0.78577 0.77249 0.77806 1.19834 1.18999 1.19048 0.87403 0.91527 0.93899 0.88712 0.85116 0.88188 0.87316 0.76404 0.83273 0.83304 0.83722 0.84301 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.36 16 2 C 0.09 2.05 6.60 86.38 0.57 2.62 16 3 N -0.46 -14.79 2.81 -513.01 -1.44 -16.23 16 4 C 0.15 4.57 7.43 137.66 1.02 5.60 16 5 C 0.23 4.36 5.28 85.63 0.45 4.81 16 6 N -0.74 -13.10 5.73 -343.06 -1.97 -15.07 16 7 C 0.21 3.46 6.65 38.18 0.25 3.72 16 8 C -0.17 -2.52 9.31 22.40 0.21 -2.31 16 9 C -0.10 -1.57 10.02 22.30 0.22 -1.35 16 10 C 0.01 0.17 7.30 22.38 0.16 0.34 16 11 F -0.16 -3.28 17.26 44.97 0.78 -2.50 16 12 C -0.11 -1.73 10.02 22.29 0.22 -1.51 16 13 C -0.17 -2.77 9.89 22.39 0.22 -2.55 16 14 N -0.31 -13.15 12.19 -49.60 -0.60 -13.75 16 15 N -0.35 -17.31 11.04 -56.71 -0.63 -17.93 16 16 C 0.16 7.15 8.06 179.47 1.45 8.60 16 17 S 0.12 6.00 21.39 -56.49 -1.21 4.80 16 18 C -0.56 -31.61 9.37 67.92 0.64 -30.97 16 19 H 0.08 4.97 6.93 -2.91 -0.02 4.95 16 20 C 0.03 1.82 5.49 84.83 0.47 2.28 16 21 N -0.90 -49.79 13.22 21.62 0.29 -49.50 16 22 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.20 7.86 -2.39 -0.02 2.18 16 30 H 0.13 1.77 7.23 -2.39 -0.02 1.75 16 31 H 0.10 1.79 7.97 -2.39 -0.02 1.77 16 32 H 0.11 1.35 7.03 -2.39 -0.02 1.34 16 33 H 0.40 7.97 8.48 -92.70 -0.79 7.18 16 34 H 0.15 1.57 6.73 -2.91 -0.02 1.55 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -70.89 349.33 4.19 -66.70 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.32 Total: 11.09 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 6.62 Total: -13.08 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -4.35 Total: -112.49 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.21 Total: 4.80 kcal Total: -70.89 4.19 -66.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004130386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.071 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds