Wall clock time and date at job start Fri Apr 10 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46919 * 2 1 4 4 C 1.34770 * 119.99415 * 180.02562 * 3 2 1 5 5 S 1.71202 * 120.00599 * 5.23060 * 4 3 2 6 6 N 1.34787 * 119.99705 * 185.23152 * 4 3 2 7 7 C 1.46501 * 120.00044 * 185.65389 * 6 4 3 8 8 C 1.50697 * 109.46894 * 270.00299 * 7 6 4 9 9 H 1.07992 * 120.00470 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99945 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99606 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00254 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46749 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46839 * 120.00148 * 12 10 8 15 15 H 1.48494 * 109.47421 * 239.99913 * 12 10 8 16 16 C 1.40078 * 119.99845 * 5.65517 * 6 4 3 17 17 C 1.38842 * 120.02118 * 236.16596 * 16 6 4 18 18 C 1.38133 * 120.04271 * 179.79507 * 17 16 6 19 19 C 1.38718 * 120.15944 * 0.20093 * 18 17 16 20 20 C 1.38988 * 119.93023 * 359.97438 * 19 18 17 21 21 C 1.38650 * 119.89059 * 0.12236 * 20 19 18 22 22 O 1.36119 * 120.77753 * 180.21767 * 20 19 18 23 23 C 1.43172 * 116.71461 * 342.69533 * 22 20 19 24 24 C 1.53474 * 108.22793 * 46.28594 * 23 22 20 25 25 O 1.36209 * 119.31702 * 179.83301 * 19 18 17 26 26 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47073 * 300.00196 * 1 2 3 28 28 H 1.08992 * 109.47554 * 60.00096 * 1 2 3 29 29 H 1.08994 * 109.46601 * 240.00143 * 2 1 3 30 30 H 1.08998 * 109.46900 * 119.99796 * 2 1 3 31 31 H 0.96996 * 120.00294 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46867 * 29.99912 * 7 6 4 33 33 H 1.08993 * 109.47009 * 150.00091 * 7 6 4 34 34 H 0.97003 * 119.99747 * 179.97438 * 11 10 8 35 35 H 1.08007 * 119.98202 * 0.06519 * 17 16 6 36 36 H 1.08004 * 119.92617 * 180.21973 * 18 17 16 37 37 H 1.07997 * 119.99392 * 179.90570 * 21 20 19 38 38 H 1.09005 * 109.70954 * 286.60942 * 23 22 20 39 39 H 1.08997 * 109.71413 * 165.97164 * 23 22 20 40 40 H 1.09003 * 109.70434 * 180.54261 * 24 23 22 41 41 H 1.09000 * 109.74363 * 59.94222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6274 -0.0005 5 16 4.4547 0.3323 -0.1363 6 7 3.7936 2.8934 0.1059 7 6 5.2260 3.1744 -0.0188 8 6 5.8731 3.0973 1.3399 9 1 5.2771 2.8629 2.2094 10 6 7.2261 3.3270 1.4731 11 7 7.9519 3.6129 0.4142 12 14 8.0283 3.2322 3.1575 13 1 7.0016 2.8961 4.1763 14 1 9.0777 2.1816 3.1474 15 1 8.6433 4.5429 3.4874 16 6 2.8919 3.9404 0.3358 17 6 2.8419 5.0186 -0.5376 18 6 1.9500 6.0493 -0.3136 19 6 1.1048 6.0130 0.7857 20 6 1.1550 4.9368 1.6638 21 6 2.0518 3.9034 1.4398 22 8 0.3305 4.8814 2.7455 23 6 -0.2900 6.1081 3.1453 24 6 -0.8513 6.7929 1.8918 25 8 0.2343 7.0401 0.9920 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3880 2.1185 0.0004 32 1 5.6839 2.4400 -0.6815 33 1 5.3656 4.1734 -0.4317 34 1 8.9037 3.7749 0.5080 35 1 3.4979 5.0494 -1.3951 36 1 1.9103 6.8853 -0.9962 37 1 2.0933 3.0671 2.1218 38 1 0.4476 6.7559 3.6190 39 1 -1.1000 5.8997 3.8443 40 1 -1.3220 7.7365 2.1681 41 1 -1.5842 6.1428 1.4139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005939813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:32 Heat of formation + Delta-G solvation = -17.140397 kcal Electronic energy + Delta-G solvation = -25398.817294 eV Core-core repulsion = 21792.192124 eV Total energy + Delta-G solvation = -3606.625170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -41.41758 -39.66748 -37.38624 -37.10569 -35.48304 -32.68799 -31.30924 -30.62421 -30.46728 -28.40701 -27.04778 -25.02468 -23.98142 -22.95265 -22.53389 -22.21897 -20.32685 -18.89754 -18.05990 -17.45469 -16.84254 -16.63641 -16.31735 -15.56808 -15.21442 -15.10326 -14.80290 -14.65986 -14.53635 -14.31174 -13.99515 -13.91462 -13.23020 -13.02440 -12.69071 -12.43993 -12.18293 -12.09622 -11.88608 -11.45494 -11.31404 -11.20294 -11.14947 -10.70993 -10.67275 -10.65134 -10.30408 -10.10024 -9.62358 -8.85959 -8.47179 -8.39111 -7.85688 -6.95945 -6.43731 -6.01079 -4.02853 1.07284 1.22128 2.16709 2.65446 2.81779 3.03367 3.35370 3.36458 3.43604 3.48552 3.62416 3.83962 3.99439 4.48833 4.50055 4.54924 4.63544 4.95250 4.96592 5.10016 5.13314 5.17773 5.23590 5.31541 5.33664 5.35732 5.66302 5.78388 5.81466 5.95936 6.01565 6.06162 6.29231 6.36914 6.60367 6.72765 6.75067 7.16659 7.26399 7.45323 7.57391 7.94198 8.00699 8.16920 8.94310 9.58944 11.08009 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.005319 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.572456 B = 5263.196991 C = 6964.072261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.701 5.701 4 C 0.560 3.440 5 S -0.629 6.629 6 N -0.502 5.502 7 C 0.242 3.758 8 C -0.511 4.511 9 H 0.057 0.943 10 C 0.067 3.933 11 N -0.893 5.893 12 Si 0.899 3.101 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.286 1.286 16 C 0.145 3.855 17 C -0.110 4.110 18 C -0.094 4.094 19 C 0.039 3.961 20 C 0.067 3.933 21 C -0.127 4.127 22 O -0.306 6.306 23 C 0.020 3.980 24 C 0.021 3.979 25 O -0.307 6.307 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.392 0.608 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.925 5.989 0.740 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.335 5.335 4 C 0.204 3.796 5 S -0.499 6.499 6 N -0.205 5.205 7 C 0.125 3.875 8 C -0.550 4.550 9 H 0.075 0.925 10 C -0.135 4.135 11 N -0.532 5.532 12 Si 0.727 3.273 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.212 1.212 16 C 0.050 3.950 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.006 4.006 20 C 0.021 3.979 21 C -0.148 4.148 22 O -0.220 6.220 23 C -0.055 4.055 24 C -0.055 4.055 25 O -0.222 6.222 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.229 0.771 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.002 5.136 0.627 21.630 hybrid contribution -0.421 1.187 1.320 1.824 sum -21.423 6.323 1.946 22.421 Atomic orbital electron populations 1.22046 0.94865 1.03206 1.02227 1.21518 0.93068 0.81091 1.04419 1.45173 1.03951 1.09990 1.74394 1.22258 0.86910 0.89275 0.81186 1.93151 1.52886 1.31477 1.72374 1.45470 1.10347 1.01120 1.63562 1.20061 0.69136 0.98298 1.00002 1.21108 0.93489 1.47944 0.92442 0.92459 1.24787 0.96736 0.94975 0.96982 1.69925 1.06903 1.47805 1.28539 0.86420 0.79446 0.77418 0.84031 1.19892 1.20709 1.21183 1.17620 0.92300 0.91159 0.93971 1.21018 0.99153 0.93226 0.99698 1.20273 0.95923 0.99589 0.95550 1.18841 0.95644 0.89744 0.96419 1.18510 0.94806 0.96148 0.88413 1.20428 0.96307 1.00211 0.97864 1.86314 1.58815 1.32780 1.44133 1.23638 0.98918 0.86080 0.96905 1.23596 0.88397 1.03277 0.90180 1.86326 1.37115 1.35384 1.63331 0.90418 0.92240 0.92259 0.89792 0.90208 0.77116 0.90374 0.94185 0.92751 0.84033 0.84177 0.84482 0.90340 0.86146 0.86207 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.03 37.16 0.37 -1.13 16 2 C 0.12 1.62 5.86 -4.04 -0.02 1.60 16 3 N -0.70 -10.89 5.13 -62.03 -0.32 -11.21 16 4 C 0.56 11.44 7.46 -86.91 -0.65 10.79 16 5 S -0.63 -15.49 27.20 -107.50 -2.92 -18.42 16 6 N -0.50 -10.49 2.57 -116.62 -0.30 -10.78 16 7 C 0.24 6.14 4.78 -5.19 -0.02 6.11 16 8 C -0.51 -14.36 9.32 -34.44 -0.32 -14.68 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 11 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 12 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.15 2.54 4.76 -83.67 -0.40 2.15 16 17 C -0.11 -1.68 9.30 -39.40 -0.37 -2.05 16 18 C -0.09 -1.25 9.95 -39.44 -0.39 -1.64 16 19 C 0.04 0.52 6.50 -39.13 -0.25 0.27 16 20 C 0.07 0.96 6.49 -39.15 -0.25 0.71 16 21 C -0.13 -2.05 7.98 -39.23 -0.31 -2.36 16 22 O -0.31 -3.92 10.42 -32.90 -0.34 -4.26 16 23 C 0.02 0.17 7.26 37.40 0.27 0.44 16 24 C 0.02 0.16 7.26 37.40 0.27 0.44 16 25 O -0.31 -3.60 10.42 -33.19 -0.35 -3.95 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 30 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.39 5.37 6.19 -40.82 -0.25 5.12 16 32 H 0.08 2.21 6.74 -51.93 -0.35 1.86 16 33 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.14 2.09 7.79 -52.48 -0.41 1.68 16 36 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.14 2.33 8.03 -52.49 -0.42 1.91 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -34.60 355.48 -10.90 -45.51 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.57 Total: 3.49 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.18 Total: 2.46 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.12 Total: -47.59 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.69 Total: -8.21 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: -15.49 SS G_CDS: -2.92 Total: -18.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.60 -10.90 -45.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005939813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.365 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds