Wall clock time and date at job start Fri Apr 10 2020 14:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46919 * 2 1 4 4 C 1.34770 * 119.99415 * 180.02562 * 3 2 1 5 5 S 1.71202 * 120.00599 * 5.23060 * 4 3 2 6 6 N 1.34787 * 119.99705 * 185.23152 * 4 3 2 7 7 C 1.46501 * 120.00044 * 185.65389 * 6 4 3 8 8 C 1.50697 * 109.46894 * 270.00299 * 7 6 4 9 9 H 1.07992 * 120.00470 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99945 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99606 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00254 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46749 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46839 * 120.00148 * 12 10 8 15 15 H 1.48494 * 109.47421 * 239.99913 * 12 10 8 16 16 C 1.40078 * 119.99845 * 5.65517 * 6 4 3 17 17 C 1.38842 * 120.02118 * 236.16596 * 16 6 4 18 18 C 1.38133 * 120.04271 * 179.79507 * 17 16 6 19 19 C 1.38718 * 120.15944 * 0.20093 * 18 17 16 20 20 C 1.38988 * 119.93023 * 359.97438 * 19 18 17 21 21 C 1.38650 * 119.89059 * 0.12236 * 20 19 18 22 22 O 1.36119 * 120.77753 * 180.21767 * 20 19 18 23 23 C 1.43172 * 116.71461 * 342.69533 * 22 20 19 24 24 C 1.53474 * 108.22793 * 46.28594 * 23 22 20 25 25 O 1.36209 * 119.31702 * 179.83301 * 19 18 17 26 26 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47073 * 300.00196 * 1 2 3 28 28 H 1.08992 * 109.47554 * 60.00096 * 1 2 3 29 29 H 1.08994 * 109.46601 * 240.00143 * 2 1 3 30 30 H 1.08998 * 109.46900 * 119.99796 * 2 1 3 31 31 H 0.96996 * 120.00294 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46867 * 29.99912 * 7 6 4 33 33 H 1.08993 * 109.47009 * 150.00091 * 7 6 4 34 34 H 0.97003 * 119.99747 * 179.97438 * 11 10 8 35 35 H 1.08007 * 119.98202 * 0.06519 * 17 16 6 36 36 H 1.08004 * 119.92617 * 180.21973 * 18 17 16 37 37 H 1.07997 * 119.99392 * 179.90570 * 21 20 19 38 38 H 1.09005 * 109.70954 * 286.60942 * 23 22 20 39 39 H 1.08997 * 109.71413 * 165.97164 * 23 22 20 40 40 H 1.09003 * 109.70434 * 180.54261 * 24 23 22 41 41 H 1.09000 * 109.74363 * 59.94222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6274 -0.0005 5 16 4.4547 0.3323 -0.1363 6 7 3.7936 2.8934 0.1059 7 6 5.2260 3.1744 -0.0188 8 6 5.8731 3.0973 1.3399 9 1 5.2771 2.8629 2.2094 10 6 7.2261 3.3270 1.4731 11 7 7.9519 3.6129 0.4142 12 14 8.0283 3.2322 3.1575 13 1 7.0016 2.8961 4.1763 14 1 9.0777 2.1816 3.1474 15 1 8.6433 4.5429 3.4874 16 6 2.8919 3.9404 0.3358 17 6 2.8419 5.0186 -0.5376 18 6 1.9500 6.0493 -0.3136 19 6 1.1048 6.0130 0.7857 20 6 1.1550 4.9368 1.6638 21 6 2.0518 3.9034 1.4398 22 8 0.3305 4.8814 2.7455 23 6 -0.2900 6.1081 3.1453 24 6 -0.8513 6.7929 1.8918 25 8 0.2343 7.0401 0.9920 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3880 2.1185 0.0004 32 1 5.6839 2.4400 -0.6815 33 1 5.3656 4.1734 -0.4317 34 1 8.9037 3.7749 0.5080 35 1 3.4979 5.0494 -1.3951 36 1 1.9103 6.8853 -0.9962 37 1 2.0933 3.0671 2.1218 38 1 0.4476 6.7559 3.6190 39 1 -1.1000 5.8997 3.8443 40 1 -1.3220 7.7365 2.1681 41 1 -1.5842 6.1428 1.4139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005939813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:31 Heat of formation + Delta-G solvation = -38.675241 kcal Electronic energy + Delta-G solvation = -25399.751115 eV Core-core repulsion = 21792.192124 eV Total energy + Delta-G solvation = -3607.558990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.44918 -41.06021 -38.37885 -38.25639 -36.93132 -34.74815 -32.29116 -31.75791 -31.69357 -29.62868 -28.76045 -26.04618 -25.57982 -24.35205 -23.87833 -23.41456 -21.49687 -20.02227 -19.18996 -18.87342 -18.31354 -18.09506 -17.85617 -16.67806 -16.49034 -16.41165 -16.14730 -15.92722 -15.61901 -15.44439 -15.40266 -15.00512 -14.60389 -14.30440 -13.91412 -13.68741 -13.54807 -13.25213 -13.09549 -12.92692 -12.81079 -12.66469 -12.43584 -12.20854 -12.17545 -12.06401 -11.97950 -11.56177 -11.52626 -10.60384 -10.19197 -9.70804 -9.22208 -8.76365 -8.39551 -8.18889 -6.28540 -0.18850 0.07575 0.57266 0.99376 1.35338 1.39866 1.49055 1.67018 1.92448 2.15322 2.38634 2.47522 2.49500 3.13679 3.19008 3.58823 3.92692 3.94124 3.97271 4.00479 4.12025 4.19142 4.25002 4.37912 4.48819 4.52704 4.60634 4.66922 4.86222 4.91254 4.93797 5.00090 5.02695 5.13211 5.20940 5.29338 5.33353 5.62416 5.75501 5.79810 5.97276 6.02999 6.28762 6.45251 6.72889 7.36220 8.88865 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.005319 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.572456 B = 5263.196991 C = 6964.072261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.117 3.883 3 N -0.672 5.672 4 C 0.579 3.421 5 S -0.728 6.728 6 N -0.502 5.502 7 C 0.262 3.738 8 C -0.519 4.519 9 H 0.042 0.958 10 C 0.019 3.981 11 N -0.921 5.921 12 Si 0.958 3.042 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.269 1.269 16 C 0.112 3.888 17 C -0.112 4.112 18 C -0.086 4.086 19 C 0.052 3.948 20 C 0.071 3.929 21 C -0.132 4.132 22 O -0.320 6.320 23 C 0.010 3.990 24 C 0.016 3.984 25 O -0.313 6.313 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.406 0.594 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.141 0.859 36 H 0.169 0.831 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.318 8.321 1.873 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.006 4.006 3 N -0.304 5.304 4 C 0.217 3.783 5 S -0.600 6.600 6 N -0.204 5.204 7 C 0.142 3.858 8 C -0.558 4.558 9 H 0.060 0.940 10 C -0.180 4.180 11 N -0.561 5.561 12 Si 0.783 3.217 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.194 1.194 16 C 0.018 3.982 17 C -0.133 4.133 18 C -0.105 4.105 19 C 0.006 3.994 20 C 0.024 3.976 21 C -0.154 4.154 22 O -0.235 6.235 23 C -0.064 4.064 24 C -0.059 4.059 25 O -0.227 6.227 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.187 0.813 37 H 0.140 0.860 38 H 0.095 0.905 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.493 7.508 1.773 25.679 hybrid contribution 0.354 0.639 1.034 1.266 sum -24.139 8.147 2.807 25.631 Atomic orbital electron populations 1.22001 0.90803 1.05014 1.03185 1.21756 0.96181 0.79265 1.03349 1.45229 1.02135 1.11732 1.71337 1.21739 0.87880 0.87929 0.80736 1.93264 1.55640 1.34156 1.76899 1.45057 1.09628 1.02187 1.63493 1.19459 0.71552 0.96747 0.97996 1.21254 0.93873 1.47679 0.92991 0.93968 1.25557 0.97309 0.94704 1.00426 1.70013 1.07262 1.48532 1.30311 0.85507 0.78308 0.77971 0.79865 1.19954 1.20738 1.19407 1.17766 0.93207 0.91307 0.95959 1.21070 0.99705 0.93069 0.99450 1.20516 0.94683 0.99424 0.95864 1.18923 0.95403 0.89457 0.95607 1.18430 0.94456 0.95557 0.89116 1.20242 0.97076 1.00737 0.97299 1.86302 1.58448 1.35352 1.43366 1.24068 0.99711 0.84652 0.97959 1.24017 0.87227 1.05634 0.88988 1.86331 1.37677 1.34541 1.64192 0.88200 0.91433 0.91027 0.90734 0.91503 0.75386 0.93890 0.94511 0.92441 0.84071 0.81319 0.85950 0.90526 0.82462 0.82431 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.03 71.98 0.72 -1.69 16 2 C 0.12 3.09 5.86 86.38 0.51 3.59 16 3 N -0.67 -21.04 5.13 -350.16 -1.80 -22.84 16 4 C 0.58 24.66 7.46 179.05 1.34 26.00 16 5 S -0.73 -38.21 27.20 -56.49 -1.54 -39.75 16 6 N -0.50 -21.80 2.57 -522.89 -1.34 -23.14 16 7 C 0.26 13.94 4.78 85.63 0.41 14.35 16 8 C -0.52 -30.28 9.32 25.60 0.24 -30.04 16 9 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 10 C 0.02 1.14 5.46 84.65 0.46 1.60 16 11 N -0.92 -55.76 13.29 21.45 0.28 -55.47 16 12 Si 0.96 46.77 29.54 68.60 2.03 48.79 16 13 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 C 0.11 3.93 4.76 38.09 0.18 4.12 16 17 C -0.11 -3.36 9.30 22.39 0.21 -3.15 16 18 C -0.09 -2.07 9.95 22.36 0.22 -1.84 16 19 C 0.05 1.25 6.50 22.56 0.15 1.40 16 20 C 0.07 1.88 6.49 22.55 0.15 2.03 16 21 C -0.13 -4.23 7.98 22.50 0.18 -4.05 16 22 O -0.32 -7.33 10.42 -82.68 -0.86 -8.19 16 23 C 0.01 0.14 7.26 72.14 0.52 0.66 16 24 C 0.02 0.17 7.26 72.14 0.52 0.69 16 25 O -0.31 -6.07 10.42 -83.71 -0.87 -6.94 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 2.15 7.88 -2.39 -0.02 2.13 16 30 H 0.07 1.97 8.09 -2.39 -0.02 1.96 16 31 H 0.41 10.83 6.19 -92.71 -0.57 10.26 16 32 H 0.04 2.60 6.74 -2.39 -0.02 2.59 16 33 H 0.04 1.97 7.31 -2.39 -0.02 1.95 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.14 4.17 7.79 -2.91 -0.02 4.14 16 36 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.12 4.21 8.03 -2.91 -0.02 4.19 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -79.80 355.48 2.19 -77.61 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.48 Total: 16.27 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.81 Total: 13.66 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -2.85 Total: -101.45 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.73 Total: -15.13 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: -38.21 SS G_CDS: -1.54 Total: -39.75 kcal Total: -79.80 2.19 -77.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005939813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds