Wall clock time and date at job start Fri Apr 10 2020 14:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38552 * 119.95254 * 2 1 4 4 N 1.33550 * 133.89579 * 359.97438 * 3 2 1 5 5 C 1.30873 * 109.80219 * 180.02562 * 4 3 2 6 6 N 1.34729 * 109.71149 * 359.97438 * 5 4 3 7 7 C 1.46500 * 126.50486 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47473 * 265.02928 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21208 * 119.99902 * 0.02562 * 9 8 7 11 11 O 1.34308 * 119.99862 * 179.97438 * 9 8 7 12 12 C 1.34922 * 117.00061 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99785 * 0.02562 * 12 11 9 14 14 C 1.38750 * 120.00381 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99695 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00301 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46672 * 90.00391 * 16 14 12 18 18 H 1.48496 * 109.47190 * 210.00246 * 16 14 12 19 19 H 1.48500 * 109.46859 * 330.00630 * 16 14 12 20 20 C 1.38054 * 106.99241 * 0.26654 * 6 5 4 21 21 C 1.41160 * 134.58857 * 180.48986 * 20 6 5 22 22 O 1.21792 * 120.38628 * 359.26642 * 21 20 6 23 23 N 1.34937 * 119.22389 * 179.54612 * 21 20 6 24 24 C 1.46491 * 119.50139 * 179.76005 * 23 21 20 25 25 C 1.34411 * 120.98683 * 359.74384 * 23 21 20 26 26 O 1.21610 * 119.16652 * 179.97438 * 25 23 21 27 27 H 1.09000 * 109.47291 * 89.99681 * 1 2 3 28 28 H 1.08994 * 109.47199 * 210.00010 * 1 2 3 29 29 H 1.08999 * 109.47289 * 329.99865 * 1 2 3 30 30 H 1.07997 * 125.14105 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47129 * 145.02670 * 7 6 5 32 32 H 1.08998 * 109.46845 * 25.03477 * 7 6 5 33 33 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 35 35 H 0.97000 * 119.99943 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.47209 * 179.97438 * 24 23 21 37 37 H 1.08999 * 109.47426 * 299.97924 * 24 23 21 38 38 H 1.09003 * 109.47493 * 59.98451 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2005 0.0000 4 7 1.7852 2.4833 -0.0004 5 6 2.8446 3.2517 -0.0007 6 7 3.9572 2.4918 0.0000 7 6 5.3410 2.9726 -0.0005 8 6 5.8638 3.0204 -1.4376 9 6 7.2871 3.5156 -1.4382 10 8 7.8297 3.8015 -0.3927 11 8 7.9547 3.6392 -2.5970 12 6 9.2250 4.0884 -2.5273 13 1 9.6605 4.3298 -1.5690 14 6 9.9723 4.2391 -3.6866 15 7 9.4423 3.9448 -4.8530 16 14 11.7313 4.8603 -3.5900 17 1 12.6557 3.7077 -3.4403 18 1 12.0630 5.6028 -4.8325 19 1 11.8735 5.7640 -2.4203 20 6 3.5457 1.1740 -0.0053 21 6 4.2098 -0.0716 0.0013 22 8 5.4267 -0.1209 0.0012 23 7 3.4806 -1.2070 0.0020 24 6 4.1636 -2.5030 0.0034 25 6 2.1371 -1.1666 0.0016 26 8 1.5128 -2.2102 0.0017 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 2.8293 4.3315 -0.0007 31 1 5.9606 2.2970 0.5892 32 1 5.3786 3.9718 0.4333 33 1 5.2442 3.6960 -2.0274 34 1 5.8262 2.0211 -1.8713 35 1 9.9646 4.0505 -5.6635 36 1 3.4239 -3.3036 0.0042 37 1 4.7878 -2.5858 -0.8863 38 1 4.7874 -2.5840 0.8937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016160861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:55 Heat of formation + Delta-G solvation = -49.211805 kcal Electronic energy + Delta-G solvation = -27053.811963 eV Core-core repulsion = 22899.502858 eV Total energy + Delta-G solvation = -4154.309105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.26022 -41.32505 -39.25747 -39.11287 -36.76959 -35.68360 -35.41133 -34.35338 -32.23347 -31.28020 -30.27402 -28.05477 -26.97539 -25.97102 -24.46504 -24.00883 -23.18414 -21.38832 -20.14112 -19.53326 -18.57961 -17.84398 -17.57528 -17.39956 -16.75934 -16.03612 -15.78775 -15.61580 -15.48061 -15.31984 -15.10824 -14.62029 -14.49012 -14.40304 -13.88691 -13.52723 -13.43062 -13.10076 -12.81696 -12.64166 -12.59038 -12.14884 -11.66637 -11.55859 -11.29325 -11.11860 -11.00478 -10.70911 -10.49964 -10.46385 -10.31696 -10.10060 -9.90124 -9.81980 -9.20358 -8.65348 -8.37348 -6.48351 -4.16918 0.70933 1.45041 1.75126 2.27109 2.39201 2.63835 3.04879 3.15078 3.20856 3.23909 3.40042 3.73299 3.88894 4.19274 4.30686 4.56143 4.63766 4.85489 4.86099 5.03658 5.05992 5.09461 5.16632 5.18711 5.31424 5.41225 5.41992 5.44896 5.52074 5.76242 5.89739 5.94069 6.21965 6.57426 6.64620 6.95291 7.26162 7.29169 7.31999 7.70619 7.86330 8.58150 8.99910 9.73171 10.69260 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.002938 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.757317 B = 9529.562654 C =10191.976589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.511 5.511 3 C 0.308 3.692 4 N -0.501 5.501 5 C 0.267 3.733 6 N -0.403 5.403 7 C 0.118 3.882 8 C -0.116 4.116 9 C 0.403 3.597 10 O -0.558 6.558 11 O -0.210 6.210 12 C -0.384 4.384 13 H 0.097 0.903 14 C 0.043 3.957 15 N -0.863 5.863 16 Si 0.945 3.055 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.266 1.266 20 C -0.147 4.147 21 C 0.588 3.412 22 O -0.497 6.497 23 N -0.553 5.553 24 C 0.083 3.917 25 C 0.709 3.291 26 O -0.543 6.543 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.231 0.769 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.271 0.729 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 -5.823 8.989 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.239 5.239 3 C 0.077 3.923 4 N -0.224 5.224 5 C -0.016 4.016 6 N -0.083 5.083 7 C -0.003 4.003 8 C -0.155 4.155 9 C 0.249 3.751 10 O -0.456 6.456 11 O -0.116 6.116 12 C -0.460 4.460 13 H 0.115 0.885 14 C -0.162 4.162 15 N -0.499 5.499 16 Si 0.769 3.231 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.265 4.265 21 C 0.382 3.618 22 O -0.370 6.370 23 N -0.298 5.298 24 C -0.057 4.057 25 C 0.412 3.588 26 O -0.416 6.416 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.247 0.753 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.214 -6.121 9.005 20.369 hybrid contribution 1.580 0.201 -0.137 1.599 sum -15.634 -5.920 8.868 18.924 Atomic orbital electron populations 1.21933 0.74443 1.04800 1.03770 1.43779 1.08687 1.00926 1.70480 1.18084 0.86944 0.87397 0.99918 1.69667 1.29484 0.98286 1.25005 1.25352 0.78369 0.99185 0.98679 1.45051 1.09263 1.03496 1.50455 1.21976 0.76538 1.03090 0.98688 1.21285 0.93492 1.04499 0.96245 1.22568 0.88436 0.80405 0.83675 1.90576 1.70065 1.51730 1.33235 1.83859 1.27049 1.69716 1.30976 1.21251 0.85160 1.44110 0.95464 0.88490 1.25369 1.00190 0.96557 0.94060 1.69994 1.37389 1.44717 0.97838 0.85654 0.80233 0.79005 0.78198 1.19797 1.20266 1.19026 1.18821 0.93387 0.87333 1.26911 1.15501 0.86914 0.82283 0.77135 1.90976 1.12113 1.86993 1.46954 1.45810 1.05838 1.09915 1.68226 1.21974 0.98109 0.81436 1.04223 1.15436 0.81539 0.83371 0.78447 1.91000 1.65882 1.29289 1.55461 0.91025 0.89089 0.89076 0.75289 0.86785 0.86729 0.88336 0.88250 0.91949 0.87825 0.89940 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.39 59.84 0.62 1.38 16 2 N -0.51 -5.93 3.06 -128.32 -0.39 -6.32 16 3 C 0.31 3.83 7.64 -154.55 -1.18 2.65 16 4 N -0.50 -5.62 11.16 -13.39 -0.15 -5.77 16 5 C 0.27 2.54 12.49 -90.35 -1.13 1.41 16 6 N -0.40 -4.89 2.78 -115.75 -0.32 -5.21 16 7 C 0.12 1.61 5.16 -4.04 -0.02 1.58 16 8 C -0.12 -1.95 6.14 -27.88 -0.17 -2.12 16 9 C 0.40 9.39 7.91 36.01 0.28 9.68 16 10 O -0.56 -13.96 15.22 -19.05 -0.29 -14.25 16 11 O -0.21 -5.87 9.75 -20.70 -0.20 -6.07 16 12 C -0.38 -11.15 9.65 30.92 0.30 -10.85 16 13 H 0.10 2.82 6.86 -52.49 -0.36 2.46 16 14 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 15 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 16 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.15 -2.02 6.90 -83.70 -0.58 -2.60 16 21 C 0.59 8.72 7.44 -15.08 -0.11 8.61 16 22 O -0.50 -8.69 16.14 5.11 0.08 -8.60 16 23 N -0.55 -7.15 2.96 -131.63 -0.39 -7.54 16 24 C 0.08 0.85 9.99 59.84 0.60 1.45 16 25 C 0.71 9.08 8.12 -87.37 -0.71 8.37 16 26 O -0.54 -7.48 15.01 5.27 0.08 -7.40 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.70 7.38 -51.93 -0.38 0.31 16 29 H 0.09 0.65 8.01 -51.93 -0.42 0.23 16 30 H 0.23 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.11 1.80 7.46 -51.93 -0.39 1.42 16 32 H 0.11 1.31 8.09 -51.93 -0.42 0.89 16 33 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.10 0.95 6.80 -51.93 -0.35 0.60 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -36.63 339.59 -6.91 -43.55 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.99 Total: 0.16 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: -2.19 Total: 20.65 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.49 Total: -49.10 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.33 Total: -36.33 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.63 -6.91 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016160861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.663 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds