Wall clock time and date at job start Fri Apr 10 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38552 * 119.95254 * 2 1 4 4 N 1.33550 * 133.89579 * 359.97438 * 3 2 1 5 5 C 1.30873 * 109.80219 * 180.02562 * 4 3 2 6 6 N 1.34729 * 109.71149 * 359.97438 * 5 4 3 7 7 C 1.46500 * 126.50486 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47473 * 265.02928 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21208 * 119.99902 * 0.02562 * 9 8 7 11 11 O 1.34308 * 119.99862 * 179.97438 * 9 8 7 12 12 C 1.34922 * 117.00061 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99785 * 0.02562 * 12 11 9 14 14 C 1.38750 * 120.00381 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99695 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00301 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46672 * 90.00391 * 16 14 12 18 18 H 1.48496 * 109.47190 * 210.00246 * 16 14 12 19 19 H 1.48500 * 109.46859 * 330.00630 * 16 14 12 20 20 C 1.38054 * 106.99241 * 0.26654 * 6 5 4 21 21 C 1.41160 * 134.58857 * 180.48986 * 20 6 5 22 22 O 1.21792 * 120.38628 * 359.26642 * 21 20 6 23 23 N 1.34937 * 119.22389 * 179.54612 * 21 20 6 24 24 C 1.46491 * 119.50139 * 179.76005 * 23 21 20 25 25 C 1.34411 * 120.98683 * 359.74384 * 23 21 20 26 26 O 1.21610 * 119.16652 * 179.97438 * 25 23 21 27 27 H 1.09000 * 109.47291 * 89.99681 * 1 2 3 28 28 H 1.08994 * 109.47199 * 210.00010 * 1 2 3 29 29 H 1.08999 * 109.47289 * 329.99865 * 1 2 3 30 30 H 1.07997 * 125.14105 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47129 * 145.02670 * 7 6 5 32 32 H 1.08998 * 109.46845 * 25.03477 * 7 6 5 33 33 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 35 35 H 0.97000 * 119.99943 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.47209 * 179.97438 * 24 23 21 37 37 H 1.08999 * 109.47426 * 299.97924 * 24 23 21 38 38 H 1.09003 * 109.47493 * 59.98451 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2005 0.0000 4 7 1.7852 2.4833 -0.0004 5 6 2.8446 3.2517 -0.0007 6 7 3.9572 2.4918 0.0000 7 6 5.3410 2.9726 -0.0005 8 6 5.8638 3.0204 -1.4376 9 6 7.2871 3.5156 -1.4382 10 8 7.8297 3.8015 -0.3927 11 8 7.9547 3.6392 -2.5970 12 6 9.2250 4.0884 -2.5273 13 1 9.6605 4.3298 -1.5690 14 6 9.9723 4.2391 -3.6866 15 7 9.4423 3.9448 -4.8530 16 14 11.7313 4.8603 -3.5900 17 1 12.6557 3.7077 -3.4403 18 1 12.0630 5.6028 -4.8325 19 1 11.8735 5.7640 -2.4203 20 6 3.5457 1.1740 -0.0053 21 6 4.2098 -0.0716 0.0013 22 8 5.4267 -0.1209 0.0012 23 7 3.4806 -1.2070 0.0020 24 6 4.1636 -2.5030 0.0034 25 6 2.1371 -1.1666 0.0016 26 8 1.5128 -2.2102 0.0017 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 2.8293 4.3315 -0.0007 31 1 5.9606 2.2970 0.5892 32 1 5.3786 3.9718 0.4333 33 1 5.2442 3.6960 -2.0274 34 1 5.8262 2.0211 -1.8713 35 1 9.9646 4.0505 -5.6635 36 1 3.4239 -3.3036 0.0042 37 1 4.7878 -2.5858 -0.8863 38 1 4.7874 -2.5840 0.8937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016160861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:52 Heat of formation + Delta-G solvation = -72.333228 kcal Electronic energy + Delta-G solvation = -27054.814583 eV Core-core repulsion = 22899.502858 eV Total energy + Delta-G solvation = -4155.311725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -44.21361 -42.30024 -41.08438 -40.29756 -37.87797 -37.37190 -36.52551 -35.57111 -34.33306 -32.34921 -31.38063 -28.93499 -27.90936 -27.71589 -25.91340 -24.98327 -24.21057 -22.36134 -21.81824 -20.54388 -19.93459 -19.57618 -18.80214 -18.47704 -18.14281 -17.17780 -17.11820 -16.87973 -16.71991 -16.45604 -16.26736 -16.10698 -16.03322 -15.42155 -15.09619 -14.80587 -14.62834 -14.25381 -13.97237 -13.61257 -13.59148 -13.42436 -13.28491 -13.16264 -12.63977 -12.38209 -12.29272 -12.17796 -12.04162 -11.93493 -11.75661 -11.33539 -11.18950 -11.10388 -10.72753 -10.72011 -9.33979 -8.56555 -6.36794 -0.27488 0.53009 0.71482 1.26592 1.28789 1.36782 1.50894 1.52087 1.59800 1.64736 2.11942 2.22909 2.68602 2.92872 2.95200 3.27585 3.55183 3.57530 3.66575 4.02202 4.21055 4.21512 4.28995 4.33637 4.34932 4.48534 4.51242 4.63310 4.68481 4.70361 4.79026 4.81952 4.92561 5.15223 5.25951 5.75281 5.80045 5.97493 6.22092 6.37909 6.60052 6.71219 6.88651 7.70301 8.64022 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.002938 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.757317 B = 9529.562654 C =10191.976589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.509 5.509 3 C 0.319 3.681 4 N -0.508 5.508 5 C 0.297 3.703 6 N -0.411 5.411 7 C 0.134 3.866 8 C -0.102 4.102 9 C 0.405 3.595 10 O -0.576 6.576 11 O -0.245 6.245 12 C -0.420 4.420 13 H 0.086 0.914 14 C -0.005 4.005 15 N -0.903 5.903 16 Si 1.017 2.983 17 H -0.264 1.264 18 H -0.260 1.260 19 H -0.260 1.260 20 C -0.182 4.182 21 C 0.584 3.416 22 O -0.538 6.538 23 N -0.555 5.555 24 C 0.079 3.921 25 C 0.707 3.293 26 O -0.555 6.555 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.281 0.719 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.279 0.721 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.357 -4.410 9.361 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.237 5.237 3 C 0.087 3.913 4 N -0.232 5.232 5 C 0.015 3.985 6 N -0.092 5.092 7 C 0.013 3.987 8 C -0.141 4.141 9 C 0.252 3.748 10 O -0.474 6.474 11 O -0.153 6.153 12 C -0.496 4.496 13 H 0.104 0.896 14 C -0.205 4.205 15 N -0.540 5.540 16 Si 0.836 3.164 17 H -0.188 1.188 18 H -0.184 1.184 19 H -0.184 1.184 20 C -0.298 4.298 21 C 0.379 3.621 22 O -0.416 6.416 23 N -0.298 5.298 24 C -0.060 4.060 25 C 0.409 3.591 26 O -0.429 6.429 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.297 0.703 31 H 0.105 0.895 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.525 -4.739 9.394 21.305 hybrid contribution 1.766 -0.258 -0.177 1.794 sum -16.759 -4.997 9.217 19.768 Atomic orbital electron populations 1.22181 0.72452 1.05800 1.04824 1.44003 1.09868 1.00409 1.69386 1.18229 0.86486 0.88057 0.98547 1.69788 1.29933 0.97575 1.25868 1.26509 0.76753 1.00790 0.94465 1.44945 1.09073 1.03237 1.51915 1.21699 0.77132 1.03932 0.95956 1.21318 0.89526 1.04074 0.99169 1.23795 0.90288 0.78360 0.82323 1.90547 1.71157 1.52038 1.33643 1.83883 1.27136 1.71070 1.33226 1.21453 0.86312 1.46140 0.95697 0.89629 1.26559 1.04776 0.95962 0.93207 1.70078 1.39537 1.45709 0.98720 0.84627 0.74021 0.78775 0.78988 1.18837 1.18414 1.18357 1.18884 0.94059 0.87674 1.29228 1.15779 0.86580 0.83167 0.76549 1.90948 1.13606 1.87544 1.49491 1.45931 1.06116 1.10282 1.67516 1.22124 0.98460 0.80845 1.04621 1.15512 0.81363 0.83694 0.78484 1.90989 1.65997 1.29748 1.56213 0.89930 0.88575 0.87619 0.70337 0.89468 0.83796 0.85141 0.89303 0.91184 0.86713 0.89908 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.39 127.77 1.33 2.58 16 2 N -0.51 -11.09 3.06 -678.21 -2.07 -13.16 16 3 C 0.32 7.35 7.64 132.82 1.01 8.36 16 4 N -0.51 -9.74 11.16 -196.26 -2.19 -11.93 16 5 C 0.30 4.45 12.49 180.25 2.25 6.71 16 6 N -0.41 -9.09 2.78 -520.12 -1.44 -10.54 16 7 C 0.13 3.47 5.16 86.38 0.45 3.91 16 8 C -0.10 -3.34 6.14 29.85 0.18 -3.16 16 9 C 0.41 19.09 7.91 71.24 0.56 19.66 16 10 O -0.58 -29.15 15.22 20.78 0.32 -28.84 16 11 O -0.25 -14.10 9.75 14.88 0.14 -13.96 16 12 C -0.42 -25.05 9.65 67.94 0.66 -24.40 16 13 H 0.09 5.13 6.86 -2.91 -0.02 5.11 16 14 C 0.00 -0.27 5.49 84.87 0.47 0.20 16 15 N -0.90 -53.05 13.67 21.62 0.30 -52.75 16 16 Si 1.02 42.83 29.55 68.60 2.03 44.86 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 C -0.18 -4.85 6.90 39.04 0.27 -4.58 16 21 C 0.58 17.64 7.44 84.93 0.63 18.27 16 22 O -0.54 -19.69 16.14 -4.64 -0.07 -19.77 16 23 N -0.55 -14.48 2.96 -806.90 -2.39 -16.87 16 24 C 0.08 1.66 9.99 127.77 1.28 2.94 16 25 C 0.71 17.68 8.12 179.21 1.45 19.14 16 26 O -0.55 -14.90 15.01 -4.06 -0.06 -14.96 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.30 7.38 -2.39 -0.02 1.28 16 29 H 0.11 1.22 8.01 -2.39 -0.02 1.20 16 30 H 0.28 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.09 2.78 7.46 -2.39 -0.02 2.76 16 32 H 0.14 2.86 8.09 -2.39 -0.02 2.84 16 33 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.11 2.10 6.80 -2.38 -0.02 2.09 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -82.46 339.59 6.21 -76.25 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.12 Total: 12.04 kcal Atomic # 6 Polarization: 39.09 SS G_CDS: 10.54 Total: 49.63 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -7.80 Total: -105.25 kcal Atomic # 8 Polarization: -77.85 SS G_CDS: 0.33 Total: -77.52 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -82.46 6.21 -76.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016160861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.917 kcal (2) G-P(sol) polarization free energy of solvation -82.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds