Wall clock time and date at job start Fri Apr 10 2020 14:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00095 * 2 1 4 4 H 1.07996 * 120.00303 * 203.04368 * 3 2 1 5 5 C 1.38815 * 119.99945 * 23.04961 * 3 2 1 6 6 N 1.31622 * 119.99890 * 12.95870 * 5 3 2 7 7 Si 1.86796 * 119.99992 * 192.96423 * 5 3 2 8 8 H 1.48495 * 109.47139 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46937 * 119.99624 * 7 5 3 10 10 H 1.48499 * 109.47030 * 239.99717 * 7 5 3 11 11 C 1.46496 * 119.99968 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47776 * 89.99409 * 11 2 1 13 13 O 1.21288 * 119.99633 * 0.02562 * 12 11 2 14 14 N 1.34768 * 120.00545 * 180.02562 * 12 11 2 15 15 N 1.40107 * 120.00158 * 180.02562 * 14 12 11 16 16 C 1.34779 * 119.99821 * 179.97438 * 15 14 12 17 17 O 1.21548 * 120.00361 * 0.02562 * 16 15 14 18 18 C 1.47842 * 119.99477 * 180.02562 * 16 15 14 19 19 C 1.39596 * 120.14875 * 359.97438 * 18 16 15 20 20 C 1.37934 * 119.85446 * 179.97438 * 19 18 16 21 21 C 1.38378 * 120.14644 * 0.25385 * 20 19 18 22 22 C 1.38347 * 120.29213 * 359.49275 * 21 20 19 23 23 N 1.48009 * 119.92718 * 180.25441 * 22 21 20 24 24 O 1.21800 * 119.99767 * 180.25288 * 23 22 21 25 25 O 1.21794 * 120.00468 * 0.25544 * 23 22 21 26 26 C 1.37980 * 120.13936 * 0.50554 * 22 21 20 27 27 H 1.09002 * 109.46635 * 275.11911 * 1 2 3 28 28 H 1.08994 * 109.47465 * 35.11401 * 1 2 3 29 29 H 1.08998 * 109.47629 * 155.11869 * 1 2 3 30 30 H 0.97001 * 120.00001 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.47102 * 329.99148 * 11 2 1 32 32 H 1.09007 * 109.47402 * 209.99990 * 11 2 1 33 33 H 0.96994 * 119.99939 * 359.97438 * 14 12 11 34 34 H 0.96995 * 119.99904 * 359.97438 * 15 14 12 35 35 H 1.07996 * 120.07100 * 0.02562 * 19 18 16 36 36 H 1.08005 * 119.92747 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.85846 * 179.72341 * 21 20 19 38 38 H 1.08002 * 120.06767 * 179.76855 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5388 2.3401 0.4707 6 7 0.4122 2.2596 1.1465 7 14 2.3154 4.0074 0.1448 8 1 3.5685 3.8266 -0.6312 9 1 1.3706 4.8504 -0.6310 10 1 2.6242 4.6707 1.4371 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7033 -1.4215 13 8 2.0549 -1.0202 -2.3431 14 7 3.1106 -2.8509 -1.6682 15 7 3.3445 -3.2547 -2.9893 16 6 4.0070 -4.4022 -3.2360 17 8 4.4012 -5.0870 -2.3125 18 6 4.2543 -4.8278 -4.6301 19 6 3.8025 -4.0439 -5.6931 20 6 4.0369 -4.4465 -6.9914 21 6 4.7138 -5.6273 -7.2413 22 6 5.1688 -6.4062 -6.1924 23 7 5.8968 -7.6649 -6.4690 24 8 6.2940 -8.3540 -5.5465 25 8 6.0988 -8.0116 -7.6189 26 6 4.9409 -6.0149 -4.8891 27 1 -0.3633 0.0917 1.0236 28 1 -0.3634 0.8406 -0.5911 29 1 -0.3634 -0.9322 -0.4324 30 1 -0.0150 3.0662 1.4751 31 1 1.6084 -2.0286 0.5131 32 1 3.1500 -1.1386 0.5133 33 1 3.4258 -3.3971 -0.9312 34 1 3.0296 -2.7083 -3.7264 35 1 3.2712 -3.1238 -5.4994 36 1 3.6875 -3.8411 -7.8147 37 1 4.8910 -5.9403 -8.2596 38 1 5.2934 -6.6257 -4.0711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:44 Heat of formation + Delta-G solvation = 25.130088 kcal Electronic energy + Delta-G solvation = -25645.038091 eV Core-core repulsion = 21493.952693 eV Total energy + Delta-G solvation = -4151.085398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59151 -40.89285 -39.50352 -38.50018 -36.94563 -35.69801 -34.93864 -33.12883 -32.23637 -31.60547 -30.71926 -27.31825 -26.94221 -25.93387 -24.72413 -23.09276 -22.11931 -21.62330 -20.69203 -19.55184 -18.99860 -17.98062 -17.91974 -17.57743 -17.06046 -16.85501 -16.01069 -15.74647 -15.69323 -15.01856 -14.92204 -14.65346 -14.58223 -13.79905 -13.64737 -13.36920 -13.07749 -13.03381 -12.51551 -11.94584 -11.93865 -11.60371 -11.57607 -11.50015 -11.15518 -10.96041 -10.81638 -10.67081 -10.54992 -10.32308 -10.09313 -10.05551 -10.03456 -9.65866 -8.67743 -8.31603 -6.96774 -5.87571 -3.34011 -0.70550 -0.03405 0.79894 0.89720 1.73811 2.08178 2.86287 3.15244 3.31307 3.38874 3.41478 3.52358 3.77538 3.98748 4.04011 4.17989 4.27166 4.40473 4.54463 4.89809 5.02495 5.20375 5.23153 5.27238 5.35096 5.49178 5.54738 5.94360 5.95130 6.11820 6.60074 6.61946 6.65479 7.22674 7.26940 7.55925 7.61408 7.70337 7.74570 8.20752 8.63367 9.05426 9.65817 10.11452 11.17341 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.002159 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.118841 B =12968.070493 C =13364.480678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.565 5.565 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.007 3.993 6 N -0.902 5.902 7 Si 0.910 3.090 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.288 1.288 11 C 0.144 3.856 12 C 0.476 3.524 13 O -0.524 6.524 14 N -0.536 5.536 15 N -0.513 5.513 16 C 0.554 3.446 17 O -0.532 6.532 18 C -0.119 4.119 19 C -0.037 4.037 20 C -0.118 4.118 21 C -0.033 4.033 22 C -0.051 4.051 23 N 0.028 4.972 24 O -0.151 6.151 25 O -0.157 6.157 26 C 0.004 3.996 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.000 1.000 30 H 0.255 0.745 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.427 0.573 34 H 0.427 0.573 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -15.185 -14.669 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.283 5.283 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.546 5.546 7 Si 0.739 3.261 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.215 1.215 11 C 0.009 3.991 12 C 0.261 3.739 13 O -0.396 6.396 14 N -0.290 5.290 15 N -0.258 5.258 16 C 0.339 3.661 17 O -0.409 6.409 18 C -0.124 4.124 19 C -0.056 4.056 20 C -0.136 4.136 21 C -0.052 4.052 22 C -0.134 4.134 23 N 0.549 4.451 24 O -0.368 6.368 25 O -0.373 6.373 26 C -0.016 4.016 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.268 0.732 34 H 0.270 0.730 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.178 0.822 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.655 -14.285 -14.414 21.067 hybrid contribution 0.527 0.625 -0.525 0.972 sum 6.183 -13.660 -14.940 21.166 Atomic orbital electron populations 1.20915 0.81729 0.96061 0.99752 1.43695 1.02235 0.99796 1.82551 1.19185 0.98232 0.85446 1.36008 0.91303 1.25011 0.97652 0.98717 0.97772 1.70080 1.19256 1.27519 1.37710 0.86110 0.78629 0.83749 0.77562 1.20240 1.21432 1.21513 1.20678 0.99259 0.90800 0.88411 1.24852 0.75432 0.77307 0.96341 1.90649 1.49990 1.52674 1.46243 1.46275 1.61279 1.25780 0.95693 1.44768 1.56842 1.22996 1.01232 1.17879 0.79223 0.80688 0.88338 1.90841 1.51641 1.53643 1.44738 1.19675 1.03073 0.96239 0.93413 1.21930 0.93151 0.98250 0.92257 1.21227 0.98976 0.95818 0.97582 1.21330 0.91824 0.92360 0.99681 1.20994 1.06965 0.89478 0.95989 1.43528 0.99070 1.01819 1.00694 1.94593 1.52592 1.51616 1.38049 1.94545 1.60692 1.75551 1.06482 1.21061 0.90824 0.94241 0.95483 0.94186 0.93662 0.98182 0.93503 0.90334 0.89277 0.73174 0.73001 0.83266 0.82425 0.82249 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 8.98 59.85 0.54 4.36 16 2 N -0.56 -13.59 2.41 -182.50 -0.44 -14.03 16 3 C -0.26 -6.93 9.65 -15.06 -0.15 -7.08 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 5 C 0.01 0.20 5.10 -17.43 -0.09 0.11 16 6 N -0.90 -25.40 10.71 55.49 0.59 -24.81 16 7 Si 0.91 21.47 29.57 -169.99 -5.03 16.44 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.14 2.62 6.12 -5.20 -0.03 2.59 16 12 C 0.48 8.30 8.02 -10.99 -0.09 8.22 16 13 O -0.52 -11.14 16.27 5.55 0.09 -11.05 16 14 N -0.54 -7.35 6.26 31.22 0.20 -7.16 16 15 N -0.51 -6.12 6.21 30.53 0.19 -5.93 16 16 C 0.55 6.32 7.89 -12.33 -0.10 6.22 16 17 O -0.53 -7.58 16.19 5.32 0.09 -7.49 16 18 C -0.12 -1.01 5.87 -104.97 -0.62 -1.63 16 19 C -0.04 -0.21 9.54 -39.19 -0.37 -0.59 16 20 C -0.12 -0.50 10.03 -39.64 -0.40 -0.90 16 21 C -0.03 -0.19 9.55 -39.49 -0.38 -0.56 16 22 C -0.05 -0.44 6.85 -80.01 -0.55 -0.99 16 23 N 0.03 0.30 4.45 33.93 0.15 0.45 16 24 O -0.15 -1.83 18.44 -29.46 -0.54 -2.38 16 25 O -0.16 -1.73 18.44 -29.46 -0.54 -2.27 16 26 C 0.00 0.04 9.10 -39.18 -0.36 -0.32 16 27 H 0.04 1.00 7.34 -51.93 -0.38 0.62 16 28 H 0.04 1.19 7.34 -51.93 -0.38 0.81 16 29 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.08 1.20 8.07 -51.93 -0.42 0.79 16 32 H 0.09 1.49 8.04 -51.93 -0.42 1.07 16 33 H 0.43 5.14 8.00 -182.60 -1.46 3.68 16 34 H 0.43 4.56 6.04 -182.60 -1.10 3.46 16 35 H 0.15 0.62 6.41 -52.49 -0.34 0.28 16 36 H 0.16 0.21 8.06 -52.48 -0.42 -0.22 16 37 H 0.16 0.63 7.60 -52.49 -0.40 0.23 16 38 H 0.17 1.62 7.20 -52.49 -0.38 1.24 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -34.61 345.27 -8.29 -42.90 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.66 Total: 0.69 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -2.58 Total: 9.44 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.69 Total: -51.48 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.91 Total: -23.20 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.61 -8.29 -42.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.033 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds