Wall clock time and date at job start Fri Apr 10 2020 14:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00095 * 2 1 4 4 H 1.07996 * 120.00303 * 203.04368 * 3 2 1 5 5 C 1.38815 * 119.99945 * 23.04961 * 3 2 1 6 6 N 1.31622 * 119.99890 * 12.95870 * 5 3 2 7 7 Si 1.86796 * 119.99992 * 192.96423 * 5 3 2 8 8 H 1.48495 * 109.47139 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46937 * 119.99624 * 7 5 3 10 10 H 1.48499 * 109.47030 * 239.99717 * 7 5 3 11 11 C 1.46496 * 119.99968 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47776 * 89.99409 * 11 2 1 13 13 O 1.21288 * 119.99633 * 0.02562 * 12 11 2 14 14 N 1.34768 * 120.00545 * 180.02562 * 12 11 2 15 15 N 1.40107 * 120.00158 * 180.02562 * 14 12 11 16 16 C 1.34779 * 119.99821 * 179.97438 * 15 14 12 17 17 O 1.21548 * 120.00361 * 0.02562 * 16 15 14 18 18 C 1.47842 * 119.99477 * 180.02562 * 16 15 14 19 19 C 1.39596 * 120.14875 * 359.97438 * 18 16 15 20 20 C 1.37934 * 119.85446 * 179.97438 * 19 18 16 21 21 C 1.38378 * 120.14644 * 0.25385 * 20 19 18 22 22 C 1.38347 * 120.29213 * 359.49275 * 21 20 19 23 23 N 1.48009 * 119.92718 * 180.25441 * 22 21 20 24 24 O 1.21800 * 119.99767 * 180.25288 * 23 22 21 25 25 O 1.21794 * 120.00468 * 0.25544 * 23 22 21 26 26 C 1.37980 * 120.13936 * 0.50554 * 22 21 20 27 27 H 1.09002 * 109.46635 * 275.11911 * 1 2 3 28 28 H 1.08994 * 109.47465 * 35.11401 * 1 2 3 29 29 H 1.08998 * 109.47629 * 155.11869 * 1 2 3 30 30 H 0.97001 * 120.00001 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.47102 * 329.99148 * 11 2 1 32 32 H 1.09007 * 109.47402 * 209.99990 * 11 2 1 33 33 H 0.96994 * 119.99939 * 359.97438 * 14 12 11 34 34 H 0.96995 * 119.99904 * 359.97438 * 15 14 12 35 35 H 1.07996 * 120.07100 * 0.02562 * 19 18 16 36 36 H 1.08005 * 119.92747 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.85846 * 179.72341 * 21 20 19 38 38 H 1.08002 * 120.06767 * 179.76855 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5388 2.3401 0.4707 6 7 0.4122 2.2596 1.1465 7 14 2.3154 4.0074 0.1448 8 1 3.5685 3.8266 -0.6312 9 1 1.3706 4.8504 -0.6310 10 1 2.6242 4.6707 1.4371 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7033 -1.4215 13 8 2.0549 -1.0202 -2.3431 14 7 3.1106 -2.8509 -1.6682 15 7 3.3445 -3.2547 -2.9893 16 6 4.0070 -4.4022 -3.2360 17 8 4.4012 -5.0870 -2.3125 18 6 4.2543 -4.8278 -4.6301 19 6 3.8025 -4.0439 -5.6931 20 6 4.0369 -4.4465 -6.9914 21 6 4.7138 -5.6273 -7.2413 22 6 5.1688 -6.4062 -6.1924 23 7 5.8968 -7.6649 -6.4690 24 8 6.2940 -8.3540 -5.5465 25 8 6.0988 -8.0116 -7.6189 26 6 4.9409 -6.0149 -4.8891 27 1 -0.3633 0.0917 1.0236 28 1 -0.3634 0.8406 -0.5911 29 1 -0.3634 -0.9322 -0.4324 30 1 -0.0150 3.0662 1.4751 31 1 1.6084 -2.0286 0.5131 32 1 3.1500 -1.1386 0.5133 33 1 3.4258 -3.3971 -0.9312 34 1 3.0296 -2.7083 -3.7264 35 1 3.2712 -3.1238 -5.4994 36 1 3.6875 -3.8411 -7.8147 37 1 4.8910 -5.9403 -8.2596 38 1 5.2934 -6.6257 -4.0711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:43 Heat of formation + Delta-G solvation = 1.373036 kcal Electronic energy + Delta-G solvation = -25646.068274 eV Core-core repulsion = 21493.952693 eV Total energy + Delta-G solvation = -4152.115581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.36500 -41.80360 -40.58162 -39.53351 -37.77078 -37.27011 -36.34776 -33.97260 -33.36280 -32.81376 -31.90348 -28.81527 -27.89793 -27.69814 -25.56548 -23.81816 -23.63844 -22.60617 -21.88142 -20.52187 -19.80669 -19.09868 -18.81581 -18.70267 -18.43965 -17.72795 -17.10044 -16.88314 -16.78328 -16.39072 -15.95723 -15.84300 -15.44058 -15.24772 -15.02969 -14.80816 -14.23340 -13.79183 -13.52039 -13.19744 -13.14313 -12.82698 -12.77620 -12.66745 -12.48705 -12.38603 -12.37639 -12.30014 -12.04101 -11.90445 -11.67134 -11.18666 -10.89774 -10.64816 -10.61008 -9.47883 -8.87920 -7.87945 -5.36617 -1.38958 -0.66836 0.12773 0.18638 0.69860 1.27348 1.45365 1.47541 1.57230 1.73056 2.26845 2.46941 2.68060 3.19677 3.27405 3.34380 3.45946 3.51777 3.62508 3.71288 3.91112 4.12553 4.41513 4.49824 4.55290 4.67586 4.69602 4.80389 4.80580 5.00895 5.27120 5.30168 5.49974 5.59694 5.63019 5.68364 6.24089 6.36349 6.46056 6.70922 7.08208 7.33117 7.76830 8.17994 9.15619 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.002159 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.118841 B =12968.070493 C =13364.480678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.589 5.589 3 C -0.261 4.261 4 H 0.066 0.934 5 C -0.048 4.048 6 N -0.932 5.932 7 Si 0.968 3.032 8 H -0.270 1.270 9 H -0.293 1.293 10 H -0.287 1.287 11 C 0.139 3.861 12 C 0.488 3.512 13 O -0.563 6.563 14 N -0.524 5.524 15 N -0.510 5.510 16 C 0.560 3.440 17 O -0.563 6.563 18 C -0.130 4.130 19 C -0.023 4.023 20 C -0.098 4.098 21 C -0.019 4.019 22 C -0.065 4.065 23 N 0.030 4.970 24 O -0.203 6.203 25 O -0.145 6.145 26 C -0.005 4.005 27 H 0.021 0.979 28 H 0.010 0.990 29 H 0.027 0.973 30 H 0.250 0.750 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.437 0.563 34 H 0.435 0.565 35 H 0.171 0.829 36 H 0.201 0.799 37 H 0.184 0.816 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -15.194 -17.100 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.309 5.309 3 C -0.391 4.391 4 H 0.084 0.916 5 C -0.244 4.244 6 N -0.578 5.578 7 Si 0.796 3.204 8 H -0.195 1.195 9 H -0.220 1.220 10 H -0.213 1.213 11 C 0.006 3.994 12 C 0.273 3.727 13 O -0.438 6.438 14 N -0.276 5.276 15 N -0.257 5.257 16 C 0.347 3.653 17 O -0.442 6.442 18 C -0.136 4.136 19 C -0.042 4.042 20 C -0.116 4.116 21 C -0.038 4.038 22 C -0.148 4.148 23 N 0.546 4.454 24 O -0.409 6.409 25 O -0.368 6.368 26 C -0.025 4.025 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.281 0.719 34 H 0.280 0.720 35 H 0.188 0.812 36 H 0.218 0.782 37 H 0.201 0.799 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.130 -14.403 -16.774 22.943 hybrid contribution 0.452 0.480 0.053 0.662 sum 6.582 -13.923 -16.720 22.732 Atomic orbital electron populations 1.20608 0.82256 0.95891 0.98106 1.43798 1.02296 1.01029 1.83757 1.19401 0.98199 0.86807 1.34681 0.91609 1.25732 0.98505 1.01757 0.98378 1.70209 1.20569 1.27774 1.39238 0.85199 0.77850 0.80061 0.77245 1.19494 1.21970 1.21324 1.20928 1.00023 0.89409 0.89074 1.23943 0.75507 0.77806 0.95399 1.90642 1.51926 1.54165 1.47100 1.45631 1.59892 1.24824 0.97295 1.44751 1.57333 1.23465 1.00129 1.18282 0.77931 0.79727 0.89331 1.90831 1.52770 1.54478 1.46134 1.19372 1.04953 0.96909 0.92340 1.22237 0.91764 0.98121 0.92092 1.21697 0.96970 0.94984 0.97940 1.21764 0.90194 0.91931 0.99888 1.21092 1.08120 0.88964 0.96666 1.43849 0.98817 1.02401 1.00334 1.94601 1.54881 1.53160 1.38249 1.94503 1.59982 1.75751 1.06529 1.20919 0.91507 0.94536 0.95525 0.96081 0.97115 0.95424 0.94030 0.87181 0.87801 0.71944 0.72037 0.81178 0.78154 0.79887 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.47 8.98 127.77 1.15 9.62 16 2 N -0.59 -28.10 2.41 -731.32 -1.76 -29.87 16 3 C -0.26 -13.93 9.65 84.03 0.81 -13.12 16 4 H 0.07 3.47 7.86 -2.91 -0.02 3.44 16 5 C -0.05 -2.64 5.10 84.86 0.43 -2.21 16 6 N -0.93 -53.55 10.71 21.65 0.23 -53.32 16 7 Si 0.97 44.45 29.57 68.60 2.03 46.48 16 8 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 C 0.14 4.81 6.12 85.63 0.52 5.33 16 12 C 0.49 16.16 8.02 87.66 0.70 16.86 16 13 O -0.56 -23.17 16.27 -3.05 -0.05 -23.22 16 14 N -0.52 -13.34 6.26 -173.54 -1.09 -14.43 16 15 N -0.51 -11.11 6.21 -175.61 -1.09 -12.20 16 16 C 0.56 12.02 7.89 86.78 0.68 12.71 16 17 O -0.56 -15.83 16.19 -3.87 -0.06 -15.89 16 18 C -0.13 -1.98 5.87 -20.09 -0.12 -2.10 16 19 C -0.02 -0.18 9.54 22.53 0.21 0.04 16 20 C -0.10 -0.33 10.03 22.23 0.22 -0.11 16 21 C -0.02 -0.14 9.55 22.33 0.21 0.07 16 22 C -0.07 -1.02 6.85 36.34 0.25 -0.77 16 23 N 0.03 0.63 4.45 -46.55 -0.21 0.42 16 24 O -0.20 -5.19 18.44 18.89 0.35 -4.84 16 25 O -0.15 -3.03 18.44 18.89 0.35 -2.68 16 26 C 0.00 -0.08 9.10 22.53 0.20 0.13 16 27 H 0.02 1.07 7.34 -2.39 -0.02 1.05 16 28 H 0.01 0.55 7.34 -2.39 -0.02 0.53 16 29 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 30 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.11 3.10 8.07 -2.38 -0.02 3.08 16 32 H 0.10 3.28 8.04 -2.38 -0.02 3.26 16 33 H 0.44 9.69 8.00 -213.32 -1.71 7.98 16 34 H 0.44 8.15 6.04 -213.32 -1.29 6.86 16 35 H 0.17 0.63 6.41 -2.91 -0.02 0.61 16 36 H 0.20 -0.88 8.06 -2.91 -0.02 -0.90 16 37 H 0.18 0.58 7.60 -2.91 -0.02 0.56 16 38 H 0.15 3.11 7.20 -2.91 -0.02 3.09 16 Total: -1.00 -77.67 345.27 2.14 -75.53 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -1.84 Total: 7.56 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 5.29 Total: 26.46 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.91 Total: -109.39 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: 0.58 Total: -46.63 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -77.67 2.14 -75.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.898 kcal (2) G-P(sol) polarization free energy of solvation -77.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds