Wall clock time and date at job start Fri Apr 10 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99953 * 2 1 4 4 H 1.07992 * 120.00163 * 202.35911 * 3 2 1 5 5 C 1.38817 * 119.99895 * 22.35368 * 3 2 1 6 6 N 1.31615 * 119.99938 * 11.42772 * 5 3 2 7 7 Si 1.86796 * 119.99908 * 191.43036 * 5 3 2 8 8 H 1.48506 * 109.47221 * 60.00219 * 7 5 3 9 9 H 1.48508 * 109.47028 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47297 * 299.99889 * 7 5 3 11 11 C 1.46501 * 120.00096 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.46690 * 269.99394 * 11 2 1 13 13 O 1.21285 * 120.00522 * 0.02562 * 12 11 2 14 14 N 1.34778 * 120.00153 * 179.97438 * 12 11 2 15 15 N 1.40097 * 120.00439 * 180.02562 * 14 12 11 16 16 C 1.34778 * 120.00015 * 179.97438 * 15 14 12 17 17 O 1.21547 * 120.00150 * 0.02562 * 16 15 14 18 18 C 1.47848 * 119.99698 * 180.02562 * 16 15 14 19 19 C 1.39578 * 120.13912 * 180.02562 * 18 16 15 20 20 C 1.37962 * 119.84796 * 180.02562 * 19 18 16 21 21 C 1.38360 * 120.14639 * 0.02874 * 20 19 18 22 22 N 1.48014 * 119.85106 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00247 * 359.97438 * 22 21 20 24 24 O 1.21803 * 120.00004 * 179.72146 * 22 21 20 25 25 C 1.38358 * 120.29197 * 0.24622 * 21 20 19 26 26 C 1.37960 * 120.14378 * 359.45424 * 25 21 20 27 27 H 1.08998 * 109.47089 * 274.12300 * 1 2 3 28 28 H 1.09002 * 109.47613 * 34.12259 * 1 2 3 29 29 H 1.09003 * 109.46828 * 154.12395 * 1 2 3 30 30 H 0.97006 * 120.00363 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46697 * 150.00043 * 11 2 1 32 32 H 1.08994 * 109.47134 * 29.99423 * 11 2 1 33 33 H 0.97008 * 119.99551 * 0.02562 * 14 12 11 34 34 H 0.97000 * 119.99708 * 0.02562 * 15 14 12 35 35 H 1.08000 * 120.07856 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.92407 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.92655 * 179.70631 * 25 21 20 38 38 H 1.07998 * 120.07085 * 180.27518 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3558 5 6 1.5338 2.3429 0.4572 6 7 0.3850 2.2688 1.0953 7 14 2.3354 4.0050 0.1668 8 1 2.4882 4.2327 -1.2927 9 1 1.4833 5.0737 0.7475 10 1 3.6715 4.0300 0.8142 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7042 1.4201 13 8 2.0543 -1.0223 2.3422 14 7 3.1109 -2.8521 1.6660 15 7 3.3440 -3.2573 2.9866 16 6 4.0057 -4.4054 3.2324 17 8 4.4006 -5.0891 2.3083 18 6 4.2512 -4.8333 4.6262 19 6 4.9366 -6.0215 4.8842 20 6 5.1619 -6.4153 6.1871 21 6 4.7096 -5.6355 7.2367 22 7 4.9544 -6.0645 8.6320 23 8 5.5525 -7.1020 8.8542 24 8 4.5619 -5.3775 9.5581 25 6 4.0246 -4.4594 6.9878 26 6 3.7980 -4.0511 5.6897 27 1 -0.3633 0.0739 1.0250 28 1 -0.3634 0.8507 -0.5765 29 1 -0.3633 -0.9247 -0.4485 30 1 -0.0452 3.0773 1.4151 31 1 3.1498 -1.1381 -0.5143 32 1 1.6084 -2.0281 -0.5146 33 1 3.4260 -3.3978 0.9284 34 1 3.0285 -2.7118 3.7241 35 1 5.2897 -6.6313 4.0658 36 1 5.6917 -7.3347 6.3881 37 1 3.6701 -3.8577 7.8116 38 1 3.2671 -3.1307 5.4967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:52 Heat of formation + Delta-G solvation = 26.551826 kcal Electronic energy + Delta-G solvation = -25680.516748 eV Core-core repulsion = 21529.493001 eV Total energy + Delta-G solvation = -4151.023747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.57397 -40.83482 -39.38502 -38.39170 -36.94448 -35.65210 -34.85715 -33.05532 -32.07494 -31.59144 -30.71433 -27.65581 -26.79156 -25.92516 -23.76862 -23.63889 -22.04370 -21.49488 -20.40972 -19.83980 -19.04700 -18.26926 -17.90868 -17.74892 -16.89095 -16.18415 -15.94742 -15.62755 -15.49602 -15.01342 -14.77819 -14.49278 -14.46613 -13.76447 -13.62546 -13.56286 -13.29296 -13.04224 -12.14255 -11.95406 -11.92338 -11.60244 -11.52836 -11.49740 -11.08955 -10.95919 -10.77905 -10.63066 -10.50964 -10.19787 -10.18504 -10.04349 -10.01739 -9.48077 -8.66401 -8.19105 -6.98071 -5.87104 -3.33174 -0.84174 0.35886 0.67718 0.94323 1.80686 2.13085 2.95111 3.30347 3.31676 3.36616 3.37295 3.66805 3.76324 3.89529 4.20147 4.24995 4.36550 4.48280 4.68355 5.06006 5.10039 5.12592 5.28054 5.35342 5.38115 5.56890 5.63499 5.93981 5.97173 6.09980 6.58025 6.68549 6.76474 7.23262 7.24090 7.59303 7.69586 7.71813 7.84042 8.20668 8.79304 9.04340 9.64743 10.10797 11.16502 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002316 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.639404 B =12086.341290 C =12892.210926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.559 5.559 3 C -0.267 4.267 4 H 0.073 0.927 5 C 0.012 3.988 6 N -0.891 5.891 7 Si 0.910 3.090 8 H -0.281 1.281 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.140 3.860 12 C 0.469 3.531 13 O -0.509 6.509 14 N -0.541 5.541 15 N -0.511 5.511 16 C 0.545 3.455 17 O -0.535 6.535 18 C -0.068 4.068 19 C -0.059 4.059 20 C -0.060 4.060 21 C -0.027 4.027 22 N 0.025 4.975 23 O -0.155 6.155 24 O -0.154 6.154 25 C -0.056 4.056 26 C -0.087 4.087 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.001 0.999 30 H 0.256 0.744 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.422 0.578 34 H 0.428 0.572 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -16.529 6.923 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.277 5.277 3 C -0.397 4.397 4 H 0.091 0.909 5 C -0.188 4.188 6 N -0.533 5.533 7 Si 0.740 3.260 8 H -0.207 1.207 9 H -0.214 1.214 10 H -0.208 1.208 11 C 0.004 3.996 12 C 0.253 3.747 13 O -0.378 6.378 14 N -0.296 5.296 15 N -0.255 5.255 16 C 0.330 3.670 17 O -0.412 6.412 18 C -0.073 4.073 19 C -0.078 4.078 20 C -0.079 4.079 21 C -0.110 4.110 22 N 0.546 4.454 23 O -0.372 6.372 24 O -0.370 6.370 25 C -0.075 4.075 26 C -0.106 4.106 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.263 0.737 34 H 0.270 0.730 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.683 -16.008 6.284 18.450 hybrid contribution 0.489 0.810 0.728 1.194 sum 7.172 -15.198 7.012 18.209 Atomic orbital electron populations 1.20955 0.81508 0.96075 1.00078 1.44101 1.02415 0.99805 1.81391 1.19179 0.98684 0.84641 1.37196 0.90923 1.25156 0.97520 0.98964 0.97188 1.70082 1.17428 1.27580 1.38200 0.86263 0.78646 0.83147 0.77990 1.20716 1.21442 1.20785 1.21266 0.98696 0.90436 0.89156 1.25212 0.75718 0.77341 0.96438 1.90718 1.49103 1.52167 1.45846 1.46805 1.61572 1.25838 0.95393 1.44986 1.56050 1.22696 1.01740 1.18051 0.79577 0.80905 0.88473 1.90814 1.51857 1.53877 1.44680 1.20327 0.98070 0.95783 0.93123 1.21318 0.95282 0.94899 0.96311 1.21073 0.96644 0.99721 0.90484 1.21371 1.08440 0.99619 0.81549 1.43629 0.98498 1.00094 1.03201 1.94553 1.39518 1.12454 1.90665 1.94570 1.53108 1.52955 1.36411 1.21029 0.94200 0.93423 0.98892 1.21479 0.98460 1.00085 0.90620 0.94554 0.92834 0.98079 0.93384 0.89895 0.90501 0.73666 0.72968 0.81910 0.82048 0.81991 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 9.01 59.85 0.54 4.27 16 2 N -0.56 -13.30 2.41 -182.51 -0.44 -13.74 16 3 C -0.27 -7.04 9.67 -15.06 -0.15 -7.18 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.42 16 5 C 0.01 0.34 5.13 -17.43 -0.09 0.25 16 6 N -0.89 -25.46 10.59 55.49 0.59 -24.87 16 7 Si 0.91 21.21 29.57 -169.99 -5.03 16.18 16 8 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.14 2.53 6.19 -5.19 -0.03 2.50 16 12 C 0.47 8.66 8.02 -10.99 -0.09 8.57 16 13 O -0.51 -11.87 16.27 5.55 0.09 -11.78 16 14 N -0.54 -7.79 6.26 31.22 0.20 -7.60 16 15 N -0.51 -6.54 6.21 30.53 0.19 -6.35 16 16 C 0.55 6.35 7.89 -12.33 -0.10 6.25 16 17 O -0.53 -7.46 16.19 5.32 0.09 -7.37 16 18 C -0.07 -0.60 5.87 -104.97 -0.62 -1.21 16 19 C -0.06 -0.43 9.60 -39.18 -0.38 -0.81 16 20 C -0.06 -0.42 9.54 -39.64 -0.38 -0.80 16 21 C -0.03 -0.23 6.86 -79.86 -0.55 -0.78 16 22 N 0.03 0.27 4.45 34.01 0.15 0.42 16 23 O -0.16 -1.76 18.43 -29.46 -0.54 -2.30 16 24 O -0.15 -1.79 18.43 -29.46 -0.54 -2.33 16 25 C -0.06 -0.42 9.54 -39.64 -0.38 -0.80 16 26 C -0.09 -0.64 9.54 -39.19 -0.37 -1.02 16 27 H 0.04 0.96 7.42 -51.93 -0.39 0.58 16 28 H 0.05 1.34 7.18 -51.93 -0.37 0.97 16 29 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 32 H 0.08 1.14 7.86 -51.93 -0.41 0.73 16 33 H 0.42 5.22 8.00 -182.59 -1.46 3.76 16 34 H 0.43 5.19 6.04 -182.60 -1.10 4.08 16 35 H 0.16 1.05 7.65 -52.49 -0.40 0.65 16 36 H 0.16 0.85 7.60 -52.48 -0.40 0.46 16 37 H 0.16 1.00 7.60 -52.49 -0.40 0.60 16 38 H 0.15 0.94 6.41 -52.49 -0.34 0.61 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -34.40 344.78 -8.28 -42.68 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.64 Total: 2.63 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.58 Total: 9.23 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.68 Total: -52.14 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.91 Total: -23.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.40 -8.28 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.229 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds