Wall clock time and date at job start Fri Apr 10 2020 14:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99953 * 2 1 4 4 H 1.07992 * 120.00163 * 202.35911 * 3 2 1 5 5 C 1.38817 * 119.99895 * 22.35368 * 3 2 1 6 6 N 1.31615 * 119.99938 * 11.42772 * 5 3 2 7 7 Si 1.86796 * 119.99908 * 191.43036 * 5 3 2 8 8 H 1.48506 * 109.47221 * 60.00219 * 7 5 3 9 9 H 1.48508 * 109.47028 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47297 * 299.99889 * 7 5 3 11 11 C 1.46501 * 120.00096 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.46690 * 269.99394 * 11 2 1 13 13 O 1.21285 * 120.00522 * 0.02562 * 12 11 2 14 14 N 1.34778 * 120.00153 * 179.97438 * 12 11 2 15 15 N 1.40097 * 120.00439 * 180.02562 * 14 12 11 16 16 C 1.34778 * 120.00015 * 179.97438 * 15 14 12 17 17 O 1.21547 * 120.00150 * 0.02562 * 16 15 14 18 18 C 1.47848 * 119.99698 * 180.02562 * 16 15 14 19 19 C 1.39578 * 120.13912 * 180.02562 * 18 16 15 20 20 C 1.37962 * 119.84796 * 180.02562 * 19 18 16 21 21 C 1.38360 * 120.14639 * 0.02874 * 20 19 18 22 22 N 1.48014 * 119.85106 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00247 * 359.97438 * 22 21 20 24 24 O 1.21803 * 120.00004 * 179.72146 * 22 21 20 25 25 C 1.38358 * 120.29197 * 0.24622 * 21 20 19 26 26 C 1.37960 * 120.14378 * 359.45424 * 25 21 20 27 27 H 1.08998 * 109.47089 * 274.12300 * 1 2 3 28 28 H 1.09002 * 109.47613 * 34.12259 * 1 2 3 29 29 H 1.09003 * 109.46828 * 154.12395 * 1 2 3 30 30 H 0.97006 * 120.00363 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46697 * 150.00043 * 11 2 1 32 32 H 1.08994 * 109.47134 * 29.99423 * 11 2 1 33 33 H 0.97008 * 119.99551 * 0.02562 * 14 12 11 34 34 H 0.97000 * 119.99708 * 0.02562 * 15 14 12 35 35 H 1.08000 * 120.07856 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.92407 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.92655 * 179.70631 * 25 21 20 38 38 H 1.07998 * 120.07085 * 180.27518 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3558 5 6 1.5338 2.3429 0.4572 6 7 0.3850 2.2688 1.0953 7 14 2.3354 4.0050 0.1668 8 1 2.4882 4.2327 -1.2927 9 1 1.4833 5.0737 0.7475 10 1 3.6715 4.0300 0.8142 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7042 1.4201 13 8 2.0543 -1.0223 2.3422 14 7 3.1109 -2.8521 1.6660 15 7 3.3440 -3.2573 2.9866 16 6 4.0057 -4.4054 3.2324 17 8 4.4006 -5.0891 2.3083 18 6 4.2512 -4.8333 4.6262 19 6 4.9366 -6.0215 4.8842 20 6 5.1619 -6.4153 6.1871 21 6 4.7096 -5.6355 7.2367 22 7 4.9544 -6.0645 8.6320 23 8 5.5525 -7.1020 8.8542 24 8 4.5619 -5.3775 9.5581 25 6 4.0246 -4.4594 6.9878 26 6 3.7980 -4.0511 5.6897 27 1 -0.3633 0.0739 1.0250 28 1 -0.3634 0.8507 -0.5765 29 1 -0.3633 -0.9247 -0.4485 30 1 -0.0452 3.0773 1.4151 31 1 3.1498 -1.1381 -0.5143 32 1 1.6084 -2.0281 -0.5146 33 1 3.4260 -3.3978 0.9284 34 1 3.0285 -2.7118 3.7241 35 1 5.2897 -6.6313 4.0658 36 1 5.6917 -7.3347 6.3881 37 1 3.6701 -3.8577 7.8116 38 1 3.2671 -3.1307 5.4967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:47 Heat of formation + Delta-G solvation = 3.086584 kcal Electronic energy + Delta-G solvation = -25681.534277 eV Core-core repulsion = 21529.493001 eV Total energy + Delta-G solvation = -4152.041276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.36152 -41.78587 -40.53259 -39.50653 -37.77337 -37.23370 -36.29726 -33.95970 -33.35512 -32.71142 -31.93403 -28.92860 -28.00694 -27.74229 -24.66495 -24.32817 -23.63031 -22.53782 -21.71494 -20.56258 -19.86096 -19.34674 -19.01025 -18.69656 -18.67510 -17.44585 -16.93465 -16.74705 -16.62432 -16.16084 -15.90892 -15.73909 -15.41137 -15.06464 -14.91529 -14.79357 -14.41932 -14.24810 -13.78220 -13.14105 -12.85360 -12.77225 -12.65852 -12.63889 -12.43387 -12.43114 -12.36545 -12.21285 -12.06481 -11.90780 -11.66160 -11.09203 -10.90863 -10.60255 -10.59802 -9.42745 -8.87089 -7.84148 -5.33538 -1.60191 -0.22581 -0.12800 0.20784 0.71772 1.26220 1.47253 1.49438 1.55490 1.81254 2.27061 2.49324 2.72686 3.16599 3.23498 3.31610 3.41434 3.59874 3.65214 3.66056 4.12973 4.16690 4.44732 4.51406 4.53211 4.59182 4.71741 4.76992 4.82925 4.97145 5.23612 5.32243 5.55699 5.59589 5.65258 5.76267 6.25857 6.36410 6.53225 6.72653 7.10407 7.42459 7.80431 8.20855 9.18558 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002316 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.639404 B =12086.341290 C =12892.210926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.584 5.584 3 C -0.268 4.268 4 H 0.080 0.920 5 C -0.050 4.050 6 N -0.930 5.930 7 Si 0.970 3.030 8 H -0.270 1.270 9 H -0.298 1.298 10 H -0.279 1.279 11 C 0.136 3.864 12 C 0.478 3.522 13 O -0.562 6.562 14 N -0.526 5.526 15 N -0.514 5.514 16 C 0.555 3.445 17 O -0.554 6.554 18 C -0.075 4.075 19 C -0.050 4.050 20 C -0.050 4.050 21 C -0.034 4.034 22 N 0.026 4.974 23 O -0.162 6.162 24 O -0.177 6.177 25 C -0.054 4.054 26 C -0.079 4.079 27 H -0.004 1.004 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.247 0.753 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.436 0.564 34 H 0.432 0.568 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -18.425 6.332 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.303 5.303 3 C -0.399 4.399 4 H 0.098 0.902 5 C -0.246 4.246 6 N -0.575 5.575 7 Si 0.798 3.202 8 H -0.196 1.196 9 H -0.224 1.224 10 H -0.205 1.205 11 C 0.003 3.997 12 C 0.263 3.737 13 O -0.436 6.436 14 N -0.279 5.279 15 N -0.260 5.260 16 C 0.342 3.658 17 O -0.432 6.432 18 C -0.080 4.080 19 C -0.069 4.069 20 C -0.069 4.069 21 C -0.117 4.117 22 N 0.543 4.457 23 O -0.379 6.379 24 O -0.390 6.390 25 C -0.073 4.073 26 C -0.099 4.099 27 H 0.015 0.985 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.280 0.720 34 H 0.275 0.725 35 H 0.193 0.807 36 H 0.199 0.801 37 H 0.191 0.809 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.318 -17.973 5.688 20.605 hybrid contribution 0.134 1.084 0.909 1.421 sum 8.452 -16.889 6.597 20.005 Atomic orbital electron populations 1.20649 0.82144 0.96836 0.97524 1.44130 1.02441 1.01050 1.82691 1.19544 0.98728 0.85973 1.35627 0.90193 1.25906 0.98366 1.02253 0.98038 1.70276 1.19155 1.27462 1.40613 0.85314 0.77420 0.79290 0.78174 1.19573 1.22414 1.20545 1.21408 1.00087 0.89293 0.88960 1.24495 0.75534 0.77743 0.95948 1.90722 1.51533 1.54115 1.47239 1.45942 1.60160 1.24907 0.96936 1.44964 1.56935 1.23472 1.00590 1.18359 0.78231 0.79792 0.89420 1.90812 1.52435 1.54278 1.45677 1.20138 0.99552 0.96814 0.91513 1.21431 0.94458 0.94303 0.96719 1.21262 0.95904 1.00014 0.89725 1.21551 1.09269 1.00394 0.80524 1.43899 0.98053 0.99815 1.03910 1.94538 1.39592 1.12696 1.91080 1.94569 1.53899 1.53192 1.37350 1.21169 0.93721 0.93183 0.99243 1.21554 0.97948 1.00211 0.90147 0.98538 0.95489 0.94097 0.94424 0.87486 0.86545 0.71969 0.72475 0.80677 0.80098 0.80851 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.26 9.01 127.77 1.15 9.41 16 2 N -0.58 -27.40 2.41 -731.33 -1.76 -29.17 16 3 C -0.27 -14.10 9.67 84.03 0.81 -13.29 16 4 H 0.08 3.96 7.84 -2.91 -0.02 3.94 16 5 C -0.05 -2.74 5.13 84.86 0.44 -2.31 16 6 N -0.93 -55.20 10.59 21.65 0.23 -54.97 16 7 Si 0.97 44.33 29.57 68.60 2.03 46.36 16 8 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 9 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 C 0.14 4.57 6.19 85.63 0.53 5.10 16 12 C 0.48 16.84 8.02 87.66 0.70 17.54 16 13 O -0.56 -26.13 16.27 -3.04 -0.05 -26.18 16 14 N -0.53 -13.87 6.26 -173.53 -1.09 -14.95 16 15 N -0.51 -12.08 6.21 -175.60 -1.09 -13.17 16 16 C 0.56 11.53 7.89 86.79 0.68 12.22 16 17 O -0.55 -13.92 16.19 -3.86 -0.06 -13.98 16 18 C -0.08 -1.13 5.87 -20.09 -0.12 -1.24 16 19 C -0.05 -0.59 9.60 22.53 0.22 -0.37 16 20 C -0.05 -0.57 9.54 22.23 0.21 -0.36 16 21 C -0.03 -0.52 6.86 36.43 0.25 -0.27 16 22 N 0.03 0.52 4.45 -46.33 -0.21 0.32 16 23 O -0.16 -3.44 18.43 18.88 0.35 -3.09 16 24 O -0.18 -4.01 18.43 18.88 0.35 -3.66 16 25 C -0.05 -0.70 9.54 22.23 0.21 -0.49 16 26 C -0.08 -1.00 9.54 22.53 0.21 -0.78 16 27 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 28 H 0.03 1.38 7.18 -2.39 -0.02 1.36 16 29 H 0.04 1.56 7.84 -2.39 -0.02 1.54 16 30 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 31 H 0.11 3.09 8.03 -2.39 -0.02 3.08 16 32 H 0.12 2.99 7.86 -2.39 -0.02 2.97 16 33 H 0.44 9.42 8.00 -213.31 -1.71 7.71 16 34 H 0.43 9.79 6.04 -213.32 -1.29 8.50 16 35 H 0.18 1.69 7.65 -2.91 -0.02 1.67 16 36 H 0.18 1.35 7.60 -2.91 -0.02 1.33 16 37 H 0.17 1.84 7.60 -2.91 -0.02 1.81 16 38 H 0.17 1.69 6.41 -2.91 -0.02 1.68 16 Total: -1.00 -76.51 344.78 2.15 -74.36 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -1.84 Total: 13.00 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 5.30 Total: 25.15 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -3.92 Total: -111.94 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: 0.58 Total: -46.92 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.51 2.15 -74.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.443 kcal (2) G-P(sol) polarization free energy of solvation -76.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds