Wall clock time and date at job start Fri Apr 10 2020 14:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47197 * 70.61813 * 3 2 1 5 5 C 1.36938 * 120.00036 * 264.23587 * 4 3 2 6 6 H 1.07990 * 120.00147 * 201.36213 * 5 4 3 7 7 C 1.38817 * 119.99836 * 21.36532 * 5 4 3 8 8 N 1.31621 * 119.99789 * 13.60831 * 7 5 4 9 9 Si 1.86791 * 119.99907 * 193.61221 * 7 5 4 10 10 H 1.48505 * 109.47405 * 84.97900 * 9 7 5 11 11 H 1.48496 * 109.47405 * 204.97843 * 9 7 5 12 12 H 1.48505 * 109.47417 * 324.97922 * 9 7 5 13 13 C 1.46503 * 119.99962 * 84.23723 * 4 3 2 14 14 C 1.50699 * 109.47020 * 269.99864 * 13 4 3 15 15 C 1.38259 * 120.00031 * 269.97661 * 14 13 4 16 16 C 1.38211 * 119.99732 * 180.02562 * 15 14 13 17 17 C 1.38260 * 120.00441 * 359.95656 * 16 15 14 18 18 C 1.38210 * 119.99507 * 0.13527 * 17 16 15 19 19 S 1.76205 * 119.99752 * 179.97438 * 18 17 16 20 20 O 1.42098 * 106.40173 * 23.45014 * 19 18 17 21 21 O 1.42100 * 106.39949 * 156.36857 * 19 18 17 22 22 N 1.65597 * 107.21852 * 269.91044 * 19 18 17 23 23 C 1.46499 * 119.99981 * 90.00185 * 22 19 18 24 24 C 1.46498 * 120.00120 * 269.99649 * 22 19 18 25 25 C 1.38217 * 119.99938 * 90.00367 * 14 13 4 26 26 H 4.40641 * 5.51440 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47387 * 310.61321 * 3 2 1 28 28 H 1.09007 * 109.46783 * 190.61612 * 3 2 1 29 29 H 0.97006 * 119.99620 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47105 * 150.00066 * 13 4 3 31 31 H 1.09000 * 109.47313 * 30.00025 * 13 4 3 32 32 H 1.07998 * 120.00030 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.99989 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.00173 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.47268 * 359.97438 * 23 22 19 36 36 H 1.08999 * 109.47147 * 119.99678 * 23 22 19 37 37 H 1.09005 * 109.47270 * 239.99690 * 23 22 19 38 38 H 1.09006 * 109.46885 * 90.00301 * 24 22 19 39 39 H 1.08996 * 109.47670 * 209.99971 * 24 22 19 40 40 H 1.09004 * 109.47244 * 330.00863 * 24 22 19 41 41 H 1.08000 * 119.99593 * 359.69496 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4575 -1.3029 5 6 3.4757 -1.7714 -1.4828 6 1 4.1398 -2.0517 -2.2869 7 6 2.9676 -2.7432 -0.6316 8 7 1.9634 -2.4566 0.1694 9 14 3.7094 -4.4575 -0.6230 10 1 4.8870 -4.4829 0.2814 11 1 2.6968 -5.4327 -0.1446 12 1 4.1342 -4.8201 -1.9991 13 6 3.2582 0.4901 -2.4134 14 6 1.9679 0.5234 -3.1913 15 6 1.7790 -0.3405 -4.2541 16 6 0.5959 -0.3095 -4.9679 17 6 -0.3991 0.5847 -4.6186 18 6 -0.2094 1.4495 -3.5573 19 16 -1.4772 2.5896 -3.1125 20 8 -2.6957 2.0450 -3.6001 21 8 -1.2630 2.9146 -1.7459 22 7 -1.2096 3.9799 -3.9714 23 6 -1.8184 4.1534 -5.2925 24 6 -0.3640 5.0364 -3.4101 25 6 0.9737 1.4180 -2.8427 26 1 -1.0500 0.0001 -0.0002 27 1 3.0097 -0.6681 0.7801 28 1 3.0088 1.0110 0.1893 29 1 1.6086 -3.1356 0.7645 30 1 4.0702 0.1768 -3.0697 31 1 3.4715 1.4843 -2.0207 32 1 2.5562 -1.0389 -4.5271 33 1 0.4484 -0.9840 -5.7983 34 1 -1.3234 0.6091 -5.1766 35 1 -2.4075 3.2703 -5.5400 36 1 -2.4652 5.0307 -5.2821 37 1 -1.0353 4.2882 -6.0387 38 1 0.6713 4.8697 -3.7077 39 1 -0.6975 6.0050 -3.7823 40 1 -0.4365 5.0204 -2.3226 41 1 1.1195 2.0897 -2.0096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281342354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:46 Heat of formation + Delta-G solvation = 27.516068 kcal Electronic energy + Delta-G solvation = -25773.861055 eV Core-core repulsion = 22169.172335 eV Total energy + Delta-G solvation = -3604.688720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27741 -38.43718 -37.74149 -37.12452 -36.90815 -33.89650 -33.40948 -32.07305 -31.71747 -28.95294 -28.04927 -27.39547 -25.58859 -24.14400 -23.90571 -22.25813 -19.93345 -19.31052 -18.73825 -18.42281 -18.25110 -17.25145 -17.01655 -16.86954 -16.18993 -15.63443 -15.58295 -15.37598 -15.24179 -15.07165 -14.74856 -14.09973 -13.99166 -13.73624 -13.60012 -13.30825 -13.25977 -13.22046 -13.18171 -13.16897 -12.74289 -12.60047 -12.57133 -12.52053 -12.31280 -12.09380 -11.96514 -11.59986 -10.84285 -10.76350 -10.26703 -10.23133 -10.00811 -9.65859 -8.92691 -7.80455 -5.29687 -0.67391 -0.03796 0.44734 1.47905 1.49437 1.56216 1.96545 2.35352 2.55371 2.58580 2.66016 2.79188 3.24481 3.34677 3.88657 3.90028 3.93302 3.99336 4.10458 4.17710 4.41644 4.43910 4.51655 4.59497 4.60039 4.78321 4.87468 4.94869 4.97655 4.98592 5.00645 5.04071 5.08945 5.16758 5.34131 5.40328 5.59280 5.63727 5.68961 5.70490 6.01801 6.30729 7.10064 7.41292 7.80646 8.24216 9.19177 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.004278 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.993194 B = 6543.252979 C = 6850.389503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.106 4.106 3 C 0.269 3.731 4 N -0.588 5.588 5 C -0.261 4.261 6 H 0.082 0.918 7 C -0.045 4.045 8 N -0.917 5.917 9 Si 0.964 3.036 10 H -0.284 1.284 11 H -0.306 1.306 12 H -0.270 1.270 13 C 0.173 3.827 14 C -0.116 4.116 15 C -0.060 4.060 16 C -0.144 4.144 17 C -0.045 4.045 18 C -0.682 4.682 19 S 2.703 3.297 20 O -0.985 6.985 21 O -0.981 6.981 22 N -1.001 6.001 23 C 0.076 3.924 24 C 0.074 3.926 25 C -0.014 4.014 26 H 0.197 0.803 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.245 0.755 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 14.778 -12.854 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.109 4.109 3 C 0.144 3.856 4 N -0.307 5.307 5 C -0.391 4.391 6 H 0.099 0.901 7 C -0.242 4.242 8 N -0.561 5.561 9 Si 0.793 3.207 10 H -0.210 1.210 11 H -0.234 1.234 12 H -0.195 1.195 13 C 0.047 3.953 14 C -0.120 4.120 15 C -0.080 4.080 16 C -0.163 4.163 17 C -0.065 4.065 18 C -0.770 4.770 19 S 2.795 3.205 20 O -0.975 6.975 21 O -0.972 6.972 22 N -0.842 5.842 23 C -0.069 4.069 24 C -0.070 4.070 25 C -0.034 4.034 26 H 0.214 0.786 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.041 14.552 -12.154 19.202 hybrid contribution 0.237 -1.800 0.127 1.820 sum -2.804 12.752 -12.027 17.752 Atomic orbital electron populations 1.24535 0.95963 1.07908 1.04106 1.24441 0.95697 0.93997 0.96773 1.17843 0.82440 0.96636 0.88717 1.44410 1.74104 1.06310 1.05867 1.19516 1.21516 0.83482 1.14562 0.90051 1.25712 0.96972 1.00971 1.00512 1.70225 1.25028 1.33560 1.27304 0.85344 0.77028 0.80321 0.78001 1.21029 1.23384 1.19511 1.20255 0.92012 0.94149 0.88851 1.21234 0.99945 0.95349 0.95507 1.21522 0.97746 0.95390 0.93301 1.21511 0.93523 0.99765 1.01513 1.20998 0.98957 0.92874 0.93631 1.30778 1.16410 1.20234 1.09559 1.01399 0.73334 0.72944 0.72837 1.93502 1.43024 1.79276 1.81709 1.93540 1.86597 1.83778 1.33240 1.57111 1.63954 1.31629 1.31547 1.21860 0.98992 1.04134 0.81868 1.21838 0.94474 0.91239 0.99479 1.20641 0.91138 0.96685 0.94970 0.78575 0.90827 0.91741 0.94564 0.90717 0.90844 0.85220 0.82986 0.83259 0.90324 0.89595 0.89865 0.91442 0.87506 0.90989 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.30 18.98 74.32 1.41 -13.89 16 2 C -0.11 -5.35 10.12 31.13 0.31 -5.04 16 3 C 0.27 12.69 5.45 84.57 0.46 13.15 16 4 N -0.59 -27.20 2.49 -716.90 -1.78 -28.98 16 5 C -0.26 -13.19 9.67 84.03 0.81 -12.38 16 6 H 0.08 3.92 7.85 -2.92 -0.02 3.90 16 7 C -0.05 -2.42 5.03 84.86 0.43 -1.99 16 8 N -0.92 -52.56 9.15 21.65 0.20 -52.36 16 9 Si 0.96 43.79 29.57 68.60 2.03 45.82 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.17 6.40 5.82 85.63 0.50 6.90 16 14 C -0.12 -4.30 5.22 -19.86 -0.10 -4.41 16 15 C -0.06 -2.08 9.70 22.27 0.22 -1.86 16 16 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 17 C -0.04 -1.36 9.52 22.27 0.21 -1.15 16 18 C -0.68 -22.54 5.97 22.27 0.13 -22.40 16 19 S 2.70 82.96 5.69 -56.49 -0.32 82.63 16 20 O -0.98 -33.57 15.85 -128.00 -2.03 -35.60 16 21 O -0.98 -36.20 15.88 -128.00 -2.03 -38.23 16 22 N -1.00 -20.97 3.58 -562.68 -2.02 -22.98 16 23 C 0.08 1.11 10.67 127.77 1.36 2.48 16 24 C 0.07 1.22 10.70 127.77 1.37 2.59 16 25 C -0.01 -0.51 7.82 22.27 0.17 -0.34 16 26 H 0.20 8.97 7.80 -4.42 -0.03 8.94 16 27 H 0.07 3.85 6.48 -2.39 -0.02 3.84 16 28 H 0.06 2.60 7.98 -2.38 -0.02 2.58 16 29 H 0.24 14.09 8.31 -92.70 -0.77 13.32 16 30 H 0.07 2.53 7.97 -2.39 -0.02 2.51 16 31 H 0.07 2.37 7.89 -2.39 -0.02 2.35 16 32 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.15 3.76 7.62 -2.91 -0.02 3.74 16 35 H 0.08 1.27 6.91 -2.39 -0.02 1.26 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.11 1.08 8.07 -2.39 -0.02 1.06 16 40 H 0.07 1.39 7.02 -2.39 -0.02 1.38 16 41 H 0.12 4.46 7.61 -2.91 -0.02 4.44 16 Total: -1.00 -71.82 360.33 2.57 -69.25 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.02 Total: 22.91 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 7.51 Total: -42.45 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.60 Total: -104.33 kcal Atomic # 8 Polarization: -69.77 SS G_CDS: -4.06 Total: -73.83 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 82.96 SS G_CDS: -0.32 Total: 82.63 kcal Total: -71.82 2.57 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281342354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.764 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds