Wall clock time and date at job start Fri Apr 10 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.38873 * 110.99973 * 2 1 4 4 C 1.40387 * 120.17248 * 83.86446 * 3 2 1 5 5 C 1.47430 * 120.20726 * 359.97438 * 4 3 2 6 6 O 1.21607 * 120.00392 * 354.68398 * 5 4 3 7 7 N 1.34777 * 120.00275 * 174.68123 * 5 4 3 8 8 C 1.46493 * 120.00636 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47385 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00140 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99630 * 180.02562 * 9 8 7 12 12 C 1.37102 * 119.99439 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00395 * 0.02562 * 12 11 9 14 14 C 1.38954 * 119.99827 * 179.97438 * 12 11 9 15 15 N 1.31415 * 120.00089 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47194 * 90.00299 * 16 14 12 18 18 H 1.48497 * 109.47278 * 210.00236 * 16 14 12 19 19 H 1.48500 * 109.47116 * 330.00588 * 16 14 12 20 20 C 1.39697 * 119.58341 * 179.97438 * 4 3 2 21 21 C 1.37785 * 119.92754 * 0.02562 * 20 4 3 22 22 C 1.38572 * 120.35097 * 359.72928 * 21 20 4 23 23 C 1.37991 * 120.42324 * 0.54578 * 22 21 20 24 24 N 1.48018 * 119.96925 * 179.72410 * 23 22 21 25 25 O 1.21800 * 120.00301 * 354.56329 * 24 23 22 26 26 O 1.21802 * 119.99672 * 174.28975 * 24 23 22 27 27 H 1.09001 * 109.46945 * 64.97565 * 1 2 3 28 28 H 1.08996 * 109.47269 * 184.97805 * 1 2 3 29 29 H 1.08998 * 109.46953 * 304.97928 * 1 2 3 30 30 H 1.00905 * 110.99770 * 123.95817 * 2 1 3 31 31 H 0.97010 * 119.99509 * 0.02562 * 7 5 4 32 32 H 1.09005 * 109.47352 * 300.00598 * 8 7 5 33 33 H 1.09002 * 109.47018 * 59.99919 * 8 7 5 34 34 H 0.96996 * 120.00867 * 359.97438 * 11 9 8 35 35 H 0.96999 * 120.00289 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.03149 * 179.97438 * 20 4 3 37 37 H 1.08000 * 119.82818 * 179.97438 * 21 20 4 38 38 H 1.08008 * 119.78880 * 180.27601 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9667 1.2965 0.0000 4 6 2.0985 2.0017 1.2067 5 6 1.7090 1.3707 2.4810 6 8 1.1826 0.2745 2.4808 7 7 1.9363 2.0088 3.6462 8 6 1.5487 1.3821 4.9123 9 6 1.9090 2.2952 6.0558 10 8 2.4372 3.3645 5.8348 11 7 1.6444 1.9236 7.3240 12 6 1.9717 2.7545 8.3642 13 1 2.4412 3.7069 8.1674 14 6 1.6984 2.3716 9.6717 15 7 1.1267 1.2129 9.9112 16 14 2.1450 3.5034 11.0890 17 1 1.0036 4.4082 11.3785 18 1 2.4505 2.6909 12.2939 19 1 3.3358 4.3108 10.7214 20 6 2.6010 3.3051 1.1925 21 6 2.9628 3.8893 -0.0017 22 6 2.8363 3.1888 -1.1906 23 6 2.3363 1.9027 -1.1940 24 7 2.1998 1.1658 -2.4705 25 8 2.4343 1.7270 -3.5258 26 8 1.8577 -0.0032 -2.4652 27 1 -0.3633 0.4347 -0.9312 28 1 -0.3633 -1.0237 0.0892 29 1 -0.3633 0.5891 0.8420 30 1 1.8306 -0.5262 0.7814 31 1 2.3559 2.8834 3.6463 32 1 0.4734 1.2036 4.9153 33 1 2.0746 0.4340 5.0244 34 1 1.2217 1.0686 7.5008 35 1 0.9362 0.9454 10.8239 36 1 2.7050 3.8544 2.1165 37 1 3.3508 4.8972 -0.0109 38 1 3.1268 3.6540 -2.1211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344181610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:06 Heat of formation + Delta-G solvation = -28.767159 kcal Electronic energy + Delta-G solvation = -26403.624164 eV Core-core repulsion = 22250.201606 eV Total energy + Delta-G solvation = -4153.422558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.26483 -40.92051 -39.06474 -38.18392 -36.76954 -36.01865 -34.64240 -33.94481 -32.46939 -31.52919 -30.63425 -28.05978 -26.70453 -25.64013 -24.82660 -23.74595 -22.12823 -20.99890 -19.89681 -19.24839 -18.61328 -18.26421 -17.68493 -17.41692 -17.30369 -16.40350 -16.09517 -15.76058 -15.39020 -15.15824 -14.94196 -14.70124 -14.31472 -14.21095 -13.66702 -13.48712 -13.01610 -12.86102 -12.80727 -12.38757 -12.20548 -12.03086 -11.75634 -11.51480 -11.23494 -11.18257 -11.05369 -10.56799 -10.45923 -10.32697 -10.03743 -9.78390 -9.76610 -9.15326 -8.83701 -8.81207 -8.25298 -6.65007 -4.07735 -0.38126 0.15934 1.13360 1.30841 2.32923 2.84427 3.01230 3.09756 3.13976 3.18783 3.56442 3.56946 3.97603 4.05373 4.16740 4.30951 4.41322 4.61021 4.66287 4.86969 5.03062 5.15238 5.26344 5.32433 5.45626 5.51824 5.63706 5.70872 5.74695 5.77774 5.85014 6.24365 6.29196 6.62122 7.00359 7.32034 7.33200 7.68485 7.75553 7.93738 8.28520 8.90096 9.22892 9.69541 10.51464 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.031669 B = 0.002419 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.929591 B =11569.992022 C =12352.823212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.638 5.638 3 C 0.228 3.772 4 C -0.179 4.179 5 C 0.559 3.441 6 O -0.541 6.541 7 N -0.692 5.692 8 C 0.108 3.892 9 C 0.423 3.577 10 O -0.600 6.600 11 N -0.544 5.544 12 C -0.308 4.308 13 H 0.106 0.894 14 C 0.028 3.972 15 N -0.892 5.892 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.022 4.022 21 C -0.135 4.135 22 C -0.025 4.025 23 C -0.053 4.053 24 N 0.032 4.968 25 O -0.199 6.199 26 O -0.102 6.102 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.379 0.621 31 H 0.412 0.588 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.396 0.604 35 H 0.276 0.724 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 2.016 -17.460 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.273 5.273 3 C 0.126 3.874 4 C -0.186 4.186 5 C 0.346 3.654 6 O -0.421 6.421 7 N -0.345 5.345 8 C -0.019 4.019 9 C 0.209 3.791 10 O -0.487 6.487 11 N -0.178 5.178 12 C -0.437 4.437 13 H 0.124 0.876 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.041 4.041 21 C -0.154 4.154 22 C -0.044 4.044 23 C -0.138 4.138 24 N 0.553 4.447 25 O -0.402 6.402 26 O -0.332 6.332 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.207 0.793 31 H 0.251 0.749 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.034 2.158 -17.429 17.592 hybrid contribution 0.008 0.499 1.539 1.618 sum 1.042 2.658 -15.890 16.144 Atomic orbital electron populations 1.22053 0.83478 1.03531 1.00292 1.57868 1.09883 1.07493 1.52038 1.18460 0.89961 0.90032 0.88952 1.20638 1.07845 0.95963 0.94146 1.17728 0.79281 0.85228 0.83181 1.90714 1.44094 1.20149 1.87135 1.45575 1.60995 1.23065 1.04853 1.21055 1.01590 0.96621 0.82648 1.19627 0.86732 0.88597 0.84137 1.90493 1.49510 1.24819 1.83901 1.41792 1.52033 1.19801 1.04154 1.19735 1.38047 1.01739 0.84205 0.87579 1.25357 0.96401 0.96847 0.98995 1.69606 1.40967 1.20209 1.22345 0.85793 0.79150 0.79384 0.79614 1.20165 1.20683 1.19252 1.21847 0.89630 0.92816 0.99837 1.21137 1.02301 1.01476 0.90458 1.21224 0.91637 0.90539 1.01031 1.21012 1.13769 0.95128 0.83858 1.43290 0.98316 1.01242 1.01873 1.94522 1.55566 1.70947 1.19143 1.94616 1.45914 0.98837 1.93797 0.92505 0.89797 0.94170 0.79264 0.74888 0.89357 0.89283 0.76965 0.91406 0.83210 0.82763 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 9.59 60.07 0.58 1.17 16 2 N -0.64 -7.88 4.50 -64.90 -0.29 -8.17 16 3 C 0.23 2.69 5.26 -83.61 -0.44 2.25 16 4 C -0.18 -1.99 5.83 -104.80 -0.61 -2.60 16 5 C 0.56 7.45 7.51 -12.52 -0.09 7.36 16 6 O -0.54 -8.10 12.15 5.27 0.06 -8.03 16 7 N -0.69 -9.73 5.48 -62.56 -0.34 -10.08 16 8 C 0.11 1.74 6.15 -5.20 -0.03 1.71 16 9 C 0.42 8.86 7.85 -10.99 -0.09 8.78 16 10 O -0.60 -14.07 15.24 5.55 0.08 -13.98 16 11 N -0.54 -12.60 5.29 -10.96 -0.06 -12.65 16 12 C -0.31 -7.94 9.68 -14.93 -0.14 -8.08 16 13 H 0.11 2.85 7.16 -52.49 -0.38 2.47 16 14 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 15 N -0.89 -22.80 13.05 55.50 0.72 -22.08 16 16 Si 0.93 19.64 29.55 -169.99 -5.02 14.62 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.02 -0.18 9.52 -39.20 -0.37 -0.56 16 21 C -0.13 -0.90 10.02 -39.62 -0.40 -1.30 16 22 C -0.02 -0.20 9.54 -39.55 -0.38 -0.58 16 23 C -0.05 -0.59 6.86 -79.79 -0.55 -1.14 16 24 N 0.03 0.42 4.45 34.04 0.15 0.57 16 25 O -0.20 -2.69 18.45 -29.46 -0.54 -3.23 16 26 O -0.10 -1.47 16.95 -29.46 -0.50 -1.97 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.49 6.72 -51.93 -0.35 0.14 16 30 H 0.38 4.86 6.49 -39.29 -0.26 4.60 16 31 H 0.41 5.56 5.49 -40.82 -0.22 5.34 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.40 8.83 7.90 -40.82 -0.32 8.50 16 35 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.15 1.07 6.44 -52.49 -0.34 0.74 16 37 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.16 1.00 7.60 -52.48 -0.40 0.60 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -30.16 336.48 -6.80 -36.96 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -3.51 Total: 15.39 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -2.62 Total: 7.59 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.18 Total: -52.41 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.89 Total: -27.22 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.16 -6.80 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344181610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.189 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds