Wall clock time and date at job start Fri Apr 10 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.38873 * 110.99973 * 2 1 4 4 C 1.40387 * 120.17248 * 83.86446 * 3 2 1 5 5 C 1.47430 * 120.20726 * 359.97438 * 4 3 2 6 6 O 1.21607 * 120.00392 * 354.68398 * 5 4 3 7 7 N 1.34777 * 120.00275 * 174.68123 * 5 4 3 8 8 C 1.46493 * 120.00636 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47385 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00140 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99630 * 180.02562 * 9 8 7 12 12 C 1.37102 * 119.99439 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00395 * 0.02562 * 12 11 9 14 14 C 1.38954 * 119.99827 * 179.97438 * 12 11 9 15 15 N 1.31415 * 120.00089 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47194 * 90.00299 * 16 14 12 18 18 H 1.48497 * 109.47278 * 210.00236 * 16 14 12 19 19 H 1.48500 * 109.47116 * 330.00588 * 16 14 12 20 20 C 1.39697 * 119.58341 * 179.97438 * 4 3 2 21 21 C 1.37785 * 119.92754 * 0.02562 * 20 4 3 22 22 C 1.38572 * 120.35097 * 359.72928 * 21 20 4 23 23 C 1.37991 * 120.42324 * 0.54578 * 22 21 20 24 24 N 1.48018 * 119.96925 * 179.72410 * 23 22 21 25 25 O 1.21800 * 120.00301 * 354.56329 * 24 23 22 26 26 O 1.21802 * 119.99672 * 174.28975 * 24 23 22 27 27 H 1.09001 * 109.46945 * 64.97565 * 1 2 3 28 28 H 1.08996 * 109.47269 * 184.97805 * 1 2 3 29 29 H 1.08998 * 109.46953 * 304.97928 * 1 2 3 30 30 H 1.00905 * 110.99770 * 123.95817 * 2 1 3 31 31 H 0.97010 * 119.99509 * 0.02562 * 7 5 4 32 32 H 1.09005 * 109.47352 * 300.00598 * 8 7 5 33 33 H 1.09002 * 109.47018 * 59.99919 * 8 7 5 34 34 H 0.96996 * 120.00867 * 359.97438 * 11 9 8 35 35 H 0.96999 * 120.00289 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.03149 * 179.97438 * 20 4 3 37 37 H 1.08000 * 119.82818 * 179.97438 * 21 20 4 38 38 H 1.08008 * 119.78880 * 180.27601 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9667 1.2965 0.0000 4 6 2.0985 2.0017 1.2067 5 6 1.7090 1.3707 2.4810 6 8 1.1826 0.2745 2.4808 7 7 1.9363 2.0088 3.6462 8 6 1.5487 1.3821 4.9123 9 6 1.9090 2.2952 6.0558 10 8 2.4372 3.3645 5.8348 11 7 1.6444 1.9236 7.3240 12 6 1.9717 2.7545 8.3642 13 1 2.4412 3.7069 8.1674 14 6 1.6984 2.3716 9.6717 15 7 1.1267 1.2129 9.9112 16 14 2.1450 3.5034 11.0890 17 1 1.0036 4.4082 11.3785 18 1 2.4505 2.6909 12.2939 19 1 3.3358 4.3108 10.7214 20 6 2.6010 3.3051 1.1925 21 6 2.9628 3.8893 -0.0017 22 6 2.8363 3.1888 -1.1906 23 6 2.3363 1.9027 -1.1940 24 7 2.1998 1.1658 -2.4705 25 8 2.4343 1.7270 -3.5258 26 8 1.8577 -0.0032 -2.4652 27 1 -0.3633 0.4347 -0.9312 28 1 -0.3633 -1.0237 0.0892 29 1 -0.3633 0.5891 0.8420 30 1 1.8306 -0.5262 0.7814 31 1 2.3559 2.8834 3.6463 32 1 0.4734 1.2036 4.9153 33 1 2.0746 0.4340 5.0244 34 1 1.2217 1.0686 7.5008 35 1 0.9362 0.9454 10.8239 36 1 2.7050 3.8544 2.1165 37 1 3.3508 4.8972 -0.0109 38 1 3.1268 3.6540 -2.1211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344181610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:03 Heat of formation + Delta-G solvation = -49.829320 kcal Electronic energy + Delta-G solvation = -26404.537488 eV Core-core repulsion = 22250.201606 eV Total energy + Delta-G solvation = -4154.335882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.20798 -41.90152 -40.42426 -39.47123 -37.72335 -36.98793 -36.20667 -35.35121 -33.49017 -33.23352 -31.45958 -29.41269 -27.64420 -26.78306 -26.22806 -24.78450 -22.95715 -22.02737 -21.44011 -20.37111 -20.02721 -19.56363 -18.61790 -18.46895 -18.25646 -17.47769 -17.35837 -16.96115 -16.63476 -16.38534 -16.15379 -15.82717 -15.66199 -15.52710 -15.08889 -14.45159 -14.09514 -13.80947 -13.64480 -13.56806 -13.54179 -13.44419 -12.94664 -12.91797 -12.55094 -12.47398 -12.16386 -12.14267 -12.09498 -11.58668 -11.37992 -10.83781 -10.61571 -10.60052 -10.26573 -10.11280 -9.69855 -8.53318 -6.03407 -1.23752 -0.64643 0.25012 0.41928 1.34832 1.42553 1.43312 1.54221 1.74847 1.87787 2.25730 2.27732 2.73033 3.04465 3.14422 3.21553 3.40811 3.58724 3.75122 3.81419 4.07938 4.19376 4.31267 4.37028 4.39369 4.45618 4.57182 4.71518 4.84143 4.86074 5.03315 5.13245 5.34598 5.36719 5.73055 5.88807 6.05207 6.23271 6.44907 6.64469 6.85318 7.01409 7.41507 7.90684 8.63316 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.031669 B = 0.002419 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.929591 B =11569.992022 C =12352.823212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.646 5.646 3 C 0.214 3.786 4 C -0.191 4.191 5 C 0.562 3.438 6 O -0.560 6.560 7 N -0.693 5.693 8 C 0.122 3.878 9 C 0.432 3.568 10 O -0.623 6.623 11 N -0.558 5.558 12 C -0.336 4.336 13 H 0.088 0.912 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.274 1.274 19 H -0.269 1.269 20 C -0.014 4.014 21 C -0.113 4.113 22 C -0.013 4.013 23 C -0.069 4.069 24 N 0.034 4.966 25 O -0.195 6.195 26 O -0.143 6.143 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.372 0.628 31 H 0.416 0.584 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.166 0.834 37 H 0.199 0.801 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 3.914 -17.891 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.280 5.280 3 C 0.112 3.888 4 C -0.198 4.198 5 C 0.350 3.650 6 O -0.441 6.441 7 N -0.346 5.346 8 C -0.006 4.006 9 C 0.219 3.781 10 O -0.511 6.511 11 N -0.193 5.193 12 C -0.465 4.465 13 H 0.106 0.894 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.199 1.199 19 H -0.193 1.193 20 C -0.033 4.033 21 C -0.131 4.131 22 C -0.032 4.032 23 C -0.155 4.155 24 N 0.551 4.449 25 O -0.402 6.402 26 O -0.364 6.364 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.200 0.800 31 H 0.256 0.744 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.183 0.817 37 H 0.216 0.784 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.744 3.993 -17.877 18.401 hybrid contribution -0.172 0.021 1.560 1.569 sum 1.572 4.015 -16.317 16.877 Atomic orbital electron populations 1.21987 0.83339 1.03703 0.99675 1.57860 1.10128 1.08299 1.51698 1.18547 0.90699 0.89953 0.89553 1.20422 1.09691 0.97178 0.92493 1.18007 0.78547 0.84885 0.83539 1.90708 1.44865 1.21095 1.87441 1.45497 1.61521 1.23276 1.04322 1.20846 1.02377 0.95712 0.81642 1.20360 0.84675 0.88534 0.84534 1.90471 1.50005 1.26141 1.84488 1.41847 1.53038 1.19855 1.04604 1.19730 1.39347 1.01854 0.85582 0.89369 1.26113 0.96036 0.98148 1.00800 1.69672 1.41595 1.21292 1.23007 0.84890 0.78810 0.77686 0.76782 1.19601 1.19879 1.19317 1.22129 0.88192 0.91540 1.01428 1.21597 1.00100 1.02711 0.88720 1.21647 0.89767 0.89028 1.02774 1.21201 1.15604 0.96219 0.82467 1.43574 0.97697 1.01168 1.02509 1.94486 1.54927 1.70713 1.20066 1.94620 1.47886 0.99758 1.94154 0.92596 0.89206 0.95192 0.79977 0.74434 0.88240 0.88182 0.76686 0.91077 0.81658 0.78444 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.37 9.59 127.69 1.22 2.59 16 2 N -0.65 -16.20 4.50 -359.26 -1.62 -17.81 16 3 C 0.21 4.89 5.26 38.71 0.20 5.10 16 4 C -0.19 -3.95 5.83 -19.98 -0.12 -4.07 16 5 C 0.56 14.43 7.51 86.66 0.65 15.08 16 6 O -0.56 -16.62 12.15 -4.05 -0.05 -16.66 16 7 N -0.69 -18.56 5.48 -470.11 -2.57 -21.14 16 8 C 0.12 3.79 6.15 85.63 0.53 4.32 16 9 C 0.43 17.93 7.85 87.66 0.69 18.61 16 10 O -0.62 -28.91 15.24 -3.06 -0.05 -28.96 16 11 N -0.56 -26.04 5.29 -306.98 -1.62 -27.66 16 12 C -0.34 -17.48 9.68 84.04 0.81 -16.66 16 13 H 0.09 4.82 7.16 -2.91 -0.02 4.80 16 14 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 15 N -0.92 -46.80 13.05 21.66 0.28 -46.51 16 16 Si 0.99 39.92 29.55 68.60 2.03 41.95 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 20 C -0.01 -0.18 9.52 22.52 0.21 0.03 16 21 C -0.11 -0.99 10.02 22.24 0.22 -0.77 16 22 C -0.01 -0.17 9.54 22.29 0.21 0.05 16 23 C -0.07 -1.47 6.86 36.48 0.25 -1.22 16 24 N 0.03 0.88 4.45 -46.21 -0.21 0.68 16 25 O -0.20 -5.06 18.45 18.89 0.35 -4.71 16 26 O -0.14 -4.22 16.95 18.88 0.32 -3.90 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 0.74 6.72 -2.39 -0.02 0.72 16 30 H 0.37 9.82 6.49 -89.69 -0.58 9.24 16 31 H 0.42 10.51 5.49 -92.70 -0.51 10.00 16 32 H 0.10 2.93 8.14 -2.38 -0.02 2.92 16 33 H 0.10 2.95 8.14 -2.39 -0.02 2.94 16 34 H 0.40 17.93 7.90 -92.71 -0.73 17.20 16 35 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 36 H 0.17 1.78 6.44 -2.91 -0.02 1.76 16 37 H 0.20 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.18 1.53 7.60 -2.91 -0.02 1.50 16 Total: -1.00 -66.01 336.48 1.57 -64.44 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.65 Total: 37.27 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.36 Total: 23.03 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -5.74 Total: -112.44 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: 0.57 Total: -54.24 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -66.01 1.57 -64.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344181610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.607 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds