Wall clock time and date at job start Fri Apr 10 2020 14:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37094 * 119.99925 * 2 1 4 4 H 1.08001 * 120.00178 * 202.68668 * 3 2 1 5 5 C 1.38949 * 120.00109 * 22.69917 * 3 2 1 6 6 N 1.31412 * 120.00068 * 12.65431 * 5 3 2 7 7 Si 1.86800 * 119.99932 * 192.66402 * 5 3 2 8 8 H 1.48499 * 109.47206 * 89.99420 * 7 5 3 9 9 H 1.48506 * 109.46916 * 209.99332 * 7 5 3 10 10 H 1.48495 * 109.47010 * 329.98980 * 7 5 3 11 11 C 1.34780 * 120.00067 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00126 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99788 * 359.97438 * 11 2 1 14 14 N 1.46501 * 109.47172 * 180.02562 * 13 11 2 15 15 C 1.34777 * 120.00487 * 179.97438 * 14 13 11 16 16 O 1.21592 * 119.99523 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00508 * 179.97438 * 15 14 13 18 18 C 1.39949 * 120.00515 * 185.18400 * 17 15 14 19 19 C 1.38885 * 120.06665 * 33.35291 * 18 17 15 20 20 C 1.38090 * 119.93156 * 179.97438 * 19 18 17 21 21 C 1.38301 * 120.06681 * 0.25417 * 20 19 18 22 22 C 1.38260 * 120.14309 * 359.49416 * 21 20 19 23 23 N 1.48020 * 119.96867 * 180.25390 * 22 21 20 24 24 O 1.21804 * 119.99990 * 180.25058 * 23 22 21 25 25 O 1.21801 * 119.99784 * 0.25566 * 23 22 21 26 26 C 1.38141 * 120.06711 * 0.50410 * 22 21 20 27 27 H 1.09004 * 109.46532 * 270.11749 * 1 2 3 28 28 H 1.08995 * 109.46947 * 30.11589 * 1 2 3 29 29 H 1.09006 * 109.47111 * 150.12167 * 1 2 3 30 30 H 0.96999 * 119.99788 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47753 * 59.99865 * 13 11 2 32 32 H 1.09003 * 109.47349 * 299.99916 * 13 11 2 33 33 H 0.96998 * 120.00207 * 359.97438 * 14 13 11 34 34 H 0.96999 * 119.99702 * 5.19155 * 17 15 14 35 35 H 1.08001 * 120.03525 * 359.97438 * 19 18 17 36 36 H 1.07993 * 119.97002 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.93295 * 179.71989 * 21 20 19 38 38 H 1.08002 * 120.03482 * 179.76862 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1678 1.2235 -0.3607 5 6 1.5365 2.3440 0.4644 6 7 0.4050 2.2662 1.1282 7 14 2.3192 4.0097 0.1447 8 1 1.8147 4.5552 -1.1410 9 1 1.9704 4.9404 1.2482 10 1 3.7946 3.8577 0.0731 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3374 -3.5858 -0.0005 15 6 1.8882 -4.8565 0.0000 16 8 0.6927 -5.0787 0.0000 17 7 2.7639 -5.8809 -0.0005 18 6 2.3012 -7.1972 -0.1095 19 6 1.1709 -7.4770 -0.8665 20 6 0.7171 -8.7768 -0.9726 21 6 1.3838 -9.7988 -0.3216 22 6 2.5123 -9.5243 0.4286 23 7 3.2261 -10.6219 1.1191 24 8 4.2176 -10.3801 1.7839 25 8 2.8219 -11.7668 1.0225 26 6 2.9713 -8.2261 0.5386 27 1 -0.3632 0.0021 1.0277 28 1 -0.3633 0.8889 -0.5156 29 1 -0.3634 -0.8911 -0.5120 30 1 -0.0238 3.0738 1.4520 31 1 0.7583 -2.5299 -0.8903 32 1 0.7591 -2.5302 0.8897 33 1 3.2911 -3.4086 -0.0009 34 1 3.7150 -5.7059 0.0747 35 1 0.6475 -6.6787 -1.3718 36 1 -0.1620 -8.9950 -1.5607 37 1 1.0243 -10.8141 -0.4023 38 1 3.8507 -8.0118 1.1278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598896639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:00 Heat of formation + Delta-G solvation = -19.282693 kcal Electronic energy + Delta-G solvation = -25682.648506 eV Core-core repulsion = 21529.637225 eV Total energy + Delta-G solvation = -4153.011281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.41809 -41.00576 -39.32847 -38.47808 -36.79794 -35.35584 -35.06524 -34.17338 -32.21560 -31.84976 -30.47194 -27.75971 -26.84165 -26.19611 -24.36541 -23.24038 -22.97581 -21.19591 -19.78903 -19.27310 -19.05059 -18.57670 -17.75442 -17.06940 -16.95956 -16.88924 -16.12186 -15.85988 -15.41121 -15.05816 -14.74041 -14.51292 -14.46810 -14.20936 -13.69285 -13.52770 -12.80663 -12.67189 -12.34604 -12.27241 -11.80098 -11.71867 -11.52255 -11.46535 -11.38863 -11.36759 -11.01516 -10.99945 -10.50698 -10.46530 -10.41343 -9.87539 -9.21097 -9.17045 -8.73401 -8.70071 -7.89890 -6.48823 -4.06292 -0.42514 0.53815 1.09976 1.11005 2.25768 2.73479 3.04944 3.14938 3.16130 3.20674 3.62322 3.84488 4.03797 4.07909 4.29244 4.41864 4.61069 4.66427 4.69523 4.96083 4.98119 5.29780 5.47085 5.57253 5.62367 5.67735 5.75020 5.81561 6.06154 6.15855 6.30004 6.37697 6.57603 6.71251 7.06845 7.39708 7.40929 7.74146 7.90514 8.24961 8.29918 8.96681 9.20280 9.70654 10.54745 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.036968 B = 0.002047 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.220733 B =13677.832082 C =14133.931580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.433 5.433 3 C -0.311 4.311 4 H 0.101 0.899 5 C 0.033 3.967 6 N -0.877 5.877 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.431 3.569 12 O -0.593 6.593 13 C 0.127 3.873 14 N -0.713 5.713 15 C 0.706 3.294 16 O -0.578 6.578 17 N -0.686 5.686 18 C 0.185 3.815 19 C -0.070 4.070 20 C -0.095 4.095 21 C -0.077 4.077 22 C -0.024 4.024 23 N 0.031 4.969 24 O -0.161 6.161 25 O -0.161 6.161 26 C -0.094 4.094 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.270 0.730 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.414 0.586 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -18.160 -4.525 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.150 5.150 3 C -0.439 4.439 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.515 5.515 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.218 3.782 12 O -0.479 6.479 13 C -0.001 4.001 14 N -0.369 5.369 15 C 0.406 3.594 16 O -0.455 6.455 17 N -0.334 5.334 18 C 0.088 3.912 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.098 4.098 22 C -0.108 4.108 23 N 0.550 4.450 24 O -0.377 6.377 25 O -0.377 6.377 26 C -0.116 4.116 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.249 0.751 34 H 0.251 0.749 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.579 -17.482 -4.765 18.189 hybrid contribution 1.214 0.864 0.302 1.520 sum -0.365 -16.619 -4.463 17.211 Atomic orbital electron populations 1.21622 0.80681 0.99675 1.01890 1.43533 1.05787 1.04568 1.61109 1.19683 0.99868 0.83497 1.40818 0.88086 1.25401 0.96497 1.00333 0.94944 1.69996 1.17923 1.29749 1.33825 0.85862 0.79660 0.80827 0.78001 1.20211 1.20814 1.19269 1.19818 0.88100 0.84786 0.85457 1.90497 1.13674 1.86557 1.57183 1.20997 0.90991 0.84682 1.03388 1.44851 1.11922 1.03023 1.77123 1.15768 0.84931 0.80603 0.78132 1.90940 1.13547 1.83792 1.57246 1.42611 1.10724 1.02915 1.77186 1.17142 0.95473 0.83148 0.95476 1.21791 0.94815 0.97938 0.94570 1.21113 1.00167 0.91016 0.99140 1.21041 0.92234 1.02109 0.94366 1.20714 0.98454 0.86922 1.04668 1.43598 1.00172 1.02102 0.99150 1.94553 1.15295 1.89815 1.38052 1.94534 1.70175 1.05904 1.67041 1.20605 1.02509 0.89635 0.98838 0.92087 0.90684 0.95092 0.91943 0.89723 0.89472 0.75149 0.74902 0.82446 0.83081 0.82938 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.18 8.50 59.85 0.51 2.69 16 2 N -0.43 -10.31 3.02 -122.19 -0.37 -10.68 16 3 C -0.31 -8.15 9.28 -14.94 -0.14 -8.29 16 4 H 0.10 2.77 7.42 -52.49 -0.39 2.38 16 5 C 0.03 0.82 5.07 -17.47 -0.09 0.73 16 6 N -0.88 -22.20 10.71 55.50 0.59 -21.61 16 7 Si 0.93 19.71 29.57 -169.99 -5.03 14.68 16 8 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 C 0.43 9.50 7.70 -10.99 -0.08 9.41 16 12 O -0.59 -14.57 15.36 5.55 0.09 -14.49 16 13 C 0.13 2.17 4.70 -5.20 -0.02 2.15 16 14 N -0.71 -10.47 5.53 -66.41 -0.37 -10.84 16 15 C 0.71 9.59 8.30 -86.93 -0.72 8.86 16 16 O -0.58 -9.30 14.02 5.28 0.07 -9.23 16 17 N -0.69 -6.84 5.35 -14.23 -0.08 -6.91 16 18 C 0.19 1.81 6.28 -83.69 -0.53 1.28 16 19 C -0.07 -0.66 8.66 -39.40 -0.34 -1.00 16 20 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 21 C -0.08 -0.61 9.55 -39.55 -0.38 -0.99 16 22 C -0.02 -0.24 6.85 -79.97 -0.55 -0.79 16 23 N 0.03 0.36 4.45 33.95 0.15 0.51 16 24 O -0.16 -2.06 18.45 -29.46 -0.54 -2.60 16 25 O -0.16 -1.98 18.44 -29.46 -0.54 -2.52 16 26 C -0.09 -0.86 9.47 -39.39 -0.37 -1.24 16 27 H 0.06 1.32 7.64 -51.93 -0.40 0.92 16 28 H 0.07 1.64 6.97 -51.93 -0.36 1.28 16 29 H 0.03 0.52 6.44 -51.93 -0.33 0.19 16 30 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.08 1.35 7.40 -51.93 -0.38 0.97 16 32 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 33 H 0.41 5.83 7.46 -40.82 -0.30 5.52 16 34 H 0.41 2.99 8.83 -40.82 -0.36 2.63 16 35 H 0.16 1.63 6.41 -52.49 -0.34 1.29 16 36 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.15 0.96 7.60 -52.48 -0.40 0.56 16 38 H 0.16 1.25 7.61 -52.49 -0.40 0.85 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -31.34 338.88 -7.67 -39.01 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.64 Total: 7.83 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -3.11 Total: 11.73 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.07 Total: -49.53 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.93 Total: -28.84 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.34 -7.67 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598896639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.727 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds