Wall clock time and date at job start Fri Apr 10 2020 14:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37094 * 119.99925 * 2 1 4 4 H 1.08001 * 120.00178 * 202.68668 * 3 2 1 5 5 C 1.38949 * 120.00109 * 22.69917 * 3 2 1 6 6 N 1.31412 * 120.00068 * 12.65431 * 5 3 2 7 7 Si 1.86800 * 119.99932 * 192.66402 * 5 3 2 8 8 H 1.48499 * 109.47206 * 89.99420 * 7 5 3 9 9 H 1.48506 * 109.46916 * 209.99332 * 7 5 3 10 10 H 1.48495 * 109.47010 * 329.98980 * 7 5 3 11 11 C 1.34780 * 120.00067 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00126 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99788 * 359.97438 * 11 2 1 14 14 N 1.46501 * 109.47172 * 180.02562 * 13 11 2 15 15 C 1.34777 * 120.00487 * 179.97438 * 14 13 11 16 16 O 1.21592 * 119.99523 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00508 * 179.97438 * 15 14 13 18 18 C 1.39949 * 120.00515 * 185.18400 * 17 15 14 19 19 C 1.38885 * 120.06665 * 33.35291 * 18 17 15 20 20 C 1.38090 * 119.93156 * 179.97438 * 19 18 17 21 21 C 1.38301 * 120.06681 * 0.25417 * 20 19 18 22 22 C 1.38260 * 120.14309 * 359.49416 * 21 20 19 23 23 N 1.48020 * 119.96867 * 180.25390 * 22 21 20 24 24 O 1.21804 * 119.99990 * 180.25058 * 23 22 21 25 25 O 1.21801 * 119.99784 * 0.25566 * 23 22 21 26 26 C 1.38141 * 120.06711 * 0.50410 * 22 21 20 27 27 H 1.09004 * 109.46532 * 270.11749 * 1 2 3 28 28 H 1.08995 * 109.46947 * 30.11589 * 1 2 3 29 29 H 1.09006 * 109.47111 * 150.12167 * 1 2 3 30 30 H 0.96999 * 119.99788 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47753 * 59.99865 * 13 11 2 32 32 H 1.09003 * 109.47349 * 299.99916 * 13 11 2 33 33 H 0.96998 * 120.00207 * 359.97438 * 14 13 11 34 34 H 0.96999 * 119.99702 * 5.19155 * 17 15 14 35 35 H 1.08001 * 120.03525 * 359.97438 * 19 18 17 36 36 H 1.07993 * 119.97002 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.93295 * 179.71989 * 21 20 19 38 38 H 1.08002 * 120.03482 * 179.76862 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1678 1.2235 -0.3607 5 6 1.5365 2.3440 0.4644 6 7 0.4050 2.2662 1.1282 7 14 2.3192 4.0097 0.1447 8 1 1.8147 4.5552 -1.1410 9 1 1.9704 4.9404 1.2482 10 1 3.7946 3.8577 0.0731 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3374 -3.5858 -0.0005 15 6 1.8882 -4.8565 0.0000 16 8 0.6927 -5.0787 0.0000 17 7 2.7639 -5.8809 -0.0005 18 6 2.3012 -7.1972 -0.1095 19 6 1.1709 -7.4770 -0.8665 20 6 0.7171 -8.7768 -0.9726 21 6 1.3838 -9.7988 -0.3216 22 6 2.5123 -9.5243 0.4286 23 7 3.2261 -10.6219 1.1191 24 8 4.2176 -10.3801 1.7839 25 8 2.8219 -11.7668 1.0225 26 6 2.9713 -8.2261 0.5386 27 1 -0.3632 0.0021 1.0277 28 1 -0.3633 0.8889 -0.5156 29 1 -0.3634 -0.8911 -0.5120 30 1 -0.0238 3.0738 1.4520 31 1 0.7583 -2.5299 -0.8903 32 1 0.7591 -2.5302 0.8897 33 1 3.2911 -3.4086 -0.0009 34 1 3.7150 -5.7059 0.0747 35 1 0.6475 -6.6787 -1.3718 36 1 -0.1620 -8.9950 -1.5607 37 1 1.0243 -10.8141 -0.4023 38 1 3.8507 -8.0118 1.1278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598896639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:57 Heat of formation + Delta-G solvation = -39.981286 kcal Electronic energy + Delta-G solvation = -25683.546065 eV Core-core repulsion = 21529.637225 eV Total energy + Delta-G solvation = -4153.908839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.28316 -41.97205 -40.60252 -39.79216 -37.70563 -36.91047 -36.13800 -35.53729 -33.72463 -32.93542 -31.34931 -29.22977 -27.85848 -27.66623 -26.07310 -23.98351 -23.89091 -22.19097 -21.17807 -20.33443 -20.05673 -19.59155 -18.91712 -18.62628 -17.90492 -17.74514 -17.53476 -17.08518 -16.64111 -16.33178 -16.19832 -15.87646 -15.65688 -15.14527 -15.05980 -14.46285 -14.13724 -13.94955 -13.50337 -13.40126 -13.23781 -13.12979 -13.03117 -12.71363 -12.65858 -12.37368 -12.35737 -12.31717 -12.14885 -11.87413 -11.55634 -11.04647 -10.57516 -10.54135 -10.36178 -9.76558 -9.52184 -8.37714 -6.03384 -1.26143 -0.14380 0.28411 0.29524 1.26386 1.36083 1.42986 1.54182 1.77117 1.90435 2.24975 2.35727 2.81681 3.05319 3.08791 3.43850 3.62058 3.69707 3.83551 3.94102 3.96268 4.30377 4.35508 4.41850 4.63137 4.63868 4.87243 4.98541 5.00828 5.03696 5.14370 5.21199 5.36645 5.42747 5.54007 5.67045 6.03243 6.38733 6.45664 6.71594 7.08366 7.20594 7.38480 7.88346 8.64172 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.036968 B = 0.002047 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.220733 B =13677.832082 C =14133.931580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.452 5.452 3 C -0.344 4.344 4 H 0.078 0.922 5 C -0.002 4.002 6 N -0.893 5.893 7 Si 0.991 3.009 8 H -0.266 1.266 9 H -0.276 1.276 10 H -0.274 1.274 11 C 0.430 3.570 12 O -0.623 6.623 13 C 0.143 3.857 14 N -0.715 5.715 15 C 0.711 3.289 16 O -0.602 6.602 17 N -0.673 5.673 18 C 0.170 3.830 19 C -0.076 4.076 20 C -0.081 4.081 21 C -0.067 4.067 22 C -0.039 4.039 23 N 0.032 4.968 24 O -0.190 6.190 25 O -0.164 6.164 26 C -0.090 4.090 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.275 0.725 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.427 0.573 35 H 0.150 0.850 36 H 0.186 0.814 37 H 0.173 0.827 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 -19.087 -5.295 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.170 5.170 3 C -0.472 4.472 4 H 0.096 0.904 5 C -0.204 4.204 6 N -0.531 5.531 7 Si 0.815 3.185 8 H -0.191 1.191 9 H -0.201 1.201 10 H -0.199 1.199 11 C 0.219 3.781 12 O -0.511 6.511 13 C 0.015 3.985 14 N -0.372 5.372 15 C 0.411 3.589 16 O -0.481 6.481 17 N -0.322 5.322 18 C 0.073 3.927 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.087 4.087 22 C -0.123 4.123 23 N 0.548 4.452 24 O -0.401 6.401 25 O -0.381 6.381 26 C -0.112 4.112 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.251 0.749 34 H 0.266 0.734 35 H 0.168 0.832 36 H 0.203 0.797 37 H 0.190 0.810 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.530 -18.441 -5.514 19.413 hybrid contribution 1.485 1.041 0.507 1.883 sum -1.046 -17.401 -5.008 18.137 Atomic orbital electron populations 1.21560 0.79053 1.00823 1.01422 1.43768 1.06939 1.04562 1.61728 1.19641 0.99629 0.85365 1.42539 0.90430 1.26116 0.96965 1.03007 0.94323 1.70067 1.18526 1.30693 1.33815 0.84963 0.78354 0.76895 0.78338 1.19062 1.20112 1.19896 1.20592 0.88009 0.85988 0.83550 1.90469 1.15316 1.87397 1.57949 1.20743 0.90717 0.82638 1.04398 1.44730 1.11603 1.03039 1.77806 1.15723 0.84903 0.80575 0.77708 1.90924 1.14689 1.84118 1.58355 1.42373 1.10990 1.02398 1.76413 1.17223 0.96198 0.82803 0.96498 1.21905 0.94543 0.98812 0.94425 1.21441 1.00567 0.89634 0.98385 1.21369 0.91064 1.03348 0.92930 1.20891 0.99307 0.86444 1.05636 1.43863 1.00022 1.02426 0.98928 1.94550 1.16270 1.89950 1.39286 1.94511 1.70042 1.06629 1.66966 1.20623 1.02617 0.89349 0.98571 0.93292 0.92303 0.91078 0.91557 0.87949 0.88959 0.74881 0.73403 0.83242 0.79701 0.80962 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.69 8.50 127.77 1.09 5.77 16 2 N -0.45 -21.70 3.02 -658.88 -1.99 -23.68 16 3 C -0.34 -18.39 9.28 84.04 0.78 -17.61 16 4 H 0.08 4.41 7.42 -2.91 -0.02 4.39 16 5 C 0.00 -0.08 5.07 84.93 0.43 0.35 16 6 N -0.89 -45.23 10.71 21.66 0.23 -45.00 16 7 Si 0.99 40.42 29.57 68.60 2.03 42.45 16 8 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 9 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 C 0.43 18.92 7.70 87.66 0.67 19.59 16 12 O -0.62 -31.04 15.36 -3.06 -0.05 -31.08 16 13 C 0.14 4.70 4.70 85.63 0.40 5.10 16 14 N -0.72 -20.18 5.53 -482.29 -2.67 -22.85 16 15 C 0.71 18.27 8.30 179.06 1.49 19.75 16 16 O -0.60 -18.36 14.02 -4.01 -0.06 -18.41 16 17 N -0.67 -12.46 5.35 -317.18 -1.70 -14.15 16 18 C 0.17 3.03 6.28 38.14 0.24 3.27 16 19 C -0.08 -1.26 8.66 22.39 0.19 -1.06 16 20 C -0.08 -0.91 10.04 22.25 0.22 -0.68 16 21 C -0.07 -0.88 9.55 22.29 0.21 -0.66 16 22 C -0.04 -0.71 6.85 36.36 0.25 -0.46 16 23 N 0.03 0.73 4.45 -46.50 -0.21 0.52 16 24 O -0.19 -4.83 18.45 18.88 0.35 -4.48 16 25 O -0.16 -3.85 18.44 18.88 0.35 -3.50 16 26 C -0.09 -1.53 9.47 22.39 0.21 -1.32 16 27 H 0.05 2.10 7.64 -2.39 -0.02 2.08 16 28 H 0.06 2.57 6.97 -2.39 -0.02 2.55 16 29 H 0.07 2.28 6.44 -2.38 -0.02 2.26 16 30 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 31 H 0.10 3.04 7.40 -2.38 -0.02 3.02 16 32 H 0.09 2.99 8.11 -2.39 -0.02 2.97 16 33 H 0.41 11.43 7.46 -92.71 -0.69 10.74 16 34 H 0.43 5.61 8.83 -92.71 -0.82 4.79 16 35 H 0.15 2.80 6.41 -2.91 -0.02 2.79 16 36 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.17 1.58 7.60 -2.91 -0.02 1.55 16 38 H 0.16 2.46 7.61 -2.91 -0.02 2.44 16 Total: -1.00 -68.05 338.88 2.13 -65.91 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.35 Total: 22.22 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 6.19 Total: 32.05 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.33 Total: -105.16 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: 0.59 Total: -57.48 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -68.05 2.13 -65.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598896639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.933 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds