Wall clock time and date at job start Fri Apr 10 2020 14:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34671 * 117.00208 * 2 1 4 4 O 1.21429 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.48060 * 119.99857 * 179.97438 * 3 2 1 6 6 C 1.40021 * 120.89355 * 359.97438 * 5 3 2 7 7 C 1.37987 * 119.15329 * 180.02562 * 6 5 3 8 8 N 1.31892 * 120.99351 * 359.72531 * 7 6 5 9 9 C 1.32265 * 121.97338 * 0.56099 * 8 7 6 10 10 N 1.39410 * 119.63565 * 179.70562 * 9 8 7 11 11 C 1.34769 * 119.99897 * 4.81289 * 10 9 8 12 12 O 1.21573 * 120.00486 * 354.90950 * 11 10 9 13 13 N 1.34783 * 120.00161 * 174.62949 * 11 10 9 14 14 C 1.46496 * 120.00253 * 180.27410 * 13 11 10 15 15 C 1.50701 * 109.47145 * 180.02562 * 14 13 11 16 16 O 1.21299 * 119.99988 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00307 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00210 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99786 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99855 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47094 * 90.00346 * 22 20 18 24 24 H 1.48494 * 109.47557 * 210.00157 * 22 20 18 25 25 H 1.48501 * 109.47155 * 330.00402 * 22 20 18 26 26 C 1.39027 * 120.73253 * 359.44357 * 9 8 7 27 27 H 1.09000 * 109.47073 * 299.99968 * 1 2 3 28 28 H 1.09003 * 109.47361 * 59.99793 * 1 2 3 29 29 H 1.09006 * 109.47516 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.42223 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.50131 * 180.02562 * 7 6 5 32 32 H 0.97008 * 120.00088 * 184.80462 * 10 9 8 33 33 H 0.97001 * 119.99438 * 0.28093 * 13 11 10 34 34 H 1.09004 * 109.46874 * 300.00379 * 14 13 11 35 35 H 1.08994 * 109.47034 * 60.00083 * 14 13 11 36 36 H 0.97007 * 119.99957 * 0.02562 * 17 15 14 37 37 H 0.97001 * 120.00143 * 179.97438 * 21 20 18 38 38 H 1.07991 * 120.54141 * 180.29579 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5420 1.2773 0.0006 6 6 4.3227 0.1150 0.0017 7 6 5.6979 0.2289 0.0027 8 7 6.2814 1.4117 -0.0027 9 6 5.5850 2.5362 0.0016 10 7 6.2523 3.7603 0.0017 11 6 7.5956 3.7954 -0.1005 12 8 8.2327 2.7600 -0.0995 13 7 8.2325 4.9783 -0.2094 14 6 9.6923 5.0162 -0.3265 15 6 10.1507 6.4479 -0.4331 16 8 9.3379 7.3480 -0.4127 17 7 11.4637 6.7281 -0.5500 18 6 11.8808 8.0306 -0.6464 19 1 11.1571 8.8321 -0.6282 20 6 13.2346 8.3195 -0.7664 21 7 14.1152 7.3443 -0.7880 22 14 13.8028 10.0940 -0.8985 23 1 14.0623 10.6331 0.4607 24 1 15.0501 10.1560 -1.7020 25 1 12.7477 10.9038 -1.5590 26 6 4.1950 2.5111 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.8546 -0.8583 0.0025 31 1 6.3055 -0.6639 0.0031 32 1 5.7497 4.5867 0.0753 33 1 7.7242 5.8044 -0.2101 34 1 10.1396 4.5564 0.5548 35 1 9.9996 4.4687 -1.2174 36 1 12.1138 6.0083 -0.5660 37 1 15.0603 7.5460 -0.8722 38 1 3.6295 3.4311 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350692881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:36 Heat of formation + Delta-G solvation = -115.603082 kcal Electronic energy + Delta-G solvation = -25170.232456 eV Core-core repulsion = 21013.044410 eV Total energy + Delta-G solvation = -4157.188046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19365 -41.45740 -40.55781 -39.82708 -37.63658 -36.34022 -36.04787 -35.30689 -33.84597 -33.36529 -31.39155 -29.08981 -28.89505 -26.54718 -25.89899 -24.35525 -23.07382 -21.58655 -21.36713 -20.14071 -19.95550 -19.52476 -18.41181 -17.69677 -17.50300 -17.45759 -17.04315 -16.81944 -16.72277 -16.27801 -16.19549 -15.96558 -15.63855 -15.13923 -15.05781 -14.99634 -14.57645 -14.30950 -13.95821 -13.63098 -13.53566 -13.27729 -12.90521 -12.89992 -12.44622 -12.12266 -11.98934 -11.97239 -11.86473 -11.61310 -11.56013 -11.08915 -10.55198 -10.29725 -10.24465 -10.07857 -9.36782 -8.50102 -6.00237 -0.53744 -0.00042 1.16104 1.37212 1.39593 1.43920 1.55250 1.58604 1.90514 2.04511 2.28298 2.79335 2.83089 3.17236 3.17370 3.44630 3.53608 3.76501 3.88100 4.09338 4.21792 4.30418 4.34998 4.44706 4.46697 4.56675 4.58672 4.75520 4.94450 5.10913 5.17169 5.23804 5.39429 5.53386 5.71855 5.92953 6.48601 6.50127 6.64034 7.04437 7.07435 7.41613 7.47641 7.95379 8.66690 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.042070 B = 0.001850 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.393987 B =15134.139241 C =15766.845912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.518 3.482 4 O -0.524 6.524 5 C -0.062 4.062 6 C -0.134 4.134 7 C 0.124 3.876 8 N -0.491 5.491 9 C 0.361 3.639 10 N -0.658 5.658 11 C 0.698 3.302 12 O -0.568 6.568 13 N -0.718 5.718 14 C 0.143 3.857 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.997 3.003 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.144 4.144 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.138 0.862 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.432 0.568 33 H 0.412 0.588 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.534 -17.482 1.764 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.363 3.637 4 O -0.413 6.413 5 C -0.072 4.072 6 C -0.155 4.155 7 C -0.034 4.034 8 N -0.207 5.207 9 C 0.130 3.870 10 N -0.308 5.308 11 C 0.398 3.602 12 O -0.442 6.442 13 N -0.376 5.376 14 C 0.015 3.985 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.168 4.168 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.199 0.801 31 H 0.210 0.790 32 H 0.271 0.729 33 H 0.250 0.750 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -22.501 -17.391 1.729 28.491 hybrid contribution -0.621 1.479 -0.034 1.604 sum -23.122 -15.912 1.695 28.119 Atomic orbital electron populations 1.23672 0.73691 1.06259 1.02851 1.86519 1.25562 1.30872 1.83418 1.21046 0.88620 0.81881 0.72191 1.90847 1.67123 1.37033 1.46344 1.19192 0.89726 0.94565 1.03695 1.22651 0.94388 0.99767 0.98704 1.23258 0.92758 0.94624 0.92741 1.67531 1.41361 0.98551 1.13216 1.18085 0.87559 0.85783 0.95567 1.42475 1.05627 1.07848 1.74871 1.15916 0.81860 0.83928 0.78538 1.91008 1.65302 1.32360 1.55548 1.44697 1.07099 1.07803 1.78028 1.20613 0.80295 0.93460 1.04154 1.20394 0.83052 0.90932 0.83564 1.90473 1.53526 1.48941 1.58274 1.41823 1.05959 1.08719 1.62893 1.19743 0.92525 0.84563 1.49890 0.89530 1.26117 0.95163 1.03968 0.95832 1.69677 1.03008 1.33807 1.49014 0.84867 0.77748 0.76759 0.78595 1.19595 1.19702 1.19498 1.21510 0.91905 0.99778 1.03581 0.91648 0.91680 0.84412 0.80085 0.78985 0.72872 0.75020 0.88725 0.88773 0.76653 0.91081 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 113.37 1.20 1.41 16 2 O -0.35 -4.54 9.92 -55.80 -0.55 -5.09 16 3 C 0.52 9.16 7.92 70.43 0.56 9.71 16 4 O -0.52 -11.92 16.23 20.07 0.33 -11.60 16 5 C -0.06 -1.08 5.90 -19.91 -0.12 -1.20 16 6 C -0.13 -1.83 9.70 22.64 0.22 -1.61 16 7 C 0.12 2.21 11.16 84.62 0.94 3.16 16 8 N -0.49 -13.20 7.85 -193.20 -1.52 -14.72 16 9 C 0.36 8.78 7.42 132.94 0.99 9.77 16 10 N -0.66 -15.94 5.39 -322.27 -1.74 -17.67 16 11 C 0.70 22.26 8.52 179.05 1.53 23.78 16 12 O -0.57 -21.95 14.60 -3.95 -0.06 -22.01 16 13 N -0.72 -23.06 5.53 -482.32 -2.67 -25.73 16 14 C 0.14 5.15 6.15 85.63 0.53 5.68 16 15 C 0.43 19.70 7.85 87.66 0.69 20.39 16 16 O -0.62 -31.67 15.24 -3.09 -0.05 -31.72 16 17 N -0.56 -27.78 5.29 -306.98 -1.62 -29.40 16 18 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 19 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 21 N -0.92 -48.40 13.05 21.66 0.28 -48.11 16 22 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 C -0.14 -2.76 9.51 22.79 0.22 -2.54 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.14 0.12 8.14 -2.38 -0.02 0.11 16 30 H 0.18 1.27 7.71 -2.91 -0.02 1.25 16 31 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.43 7.35 8.72 -92.70 -0.81 6.55 16 33 H 0.41 12.62 7.46 -92.71 -0.69 11.93 16 34 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.40 19.10 7.90 -92.70 -0.73 18.36 16 37 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.16 2.63 7.74 -2.92 -0.02 2.61 16 Total: -1.00 -75.39 347.61 1.39 -74.00 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -1.07 Total: 37.61 kcal Atomic # 6 Polarization: 42.78 SS G_CDS: 8.03 Total: 50.81 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -7.26 Total: -135.64 kcal Atomic # 8 Polarization: -70.08 SS G_CDS: -0.33 Total: -70.42 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -75.39 1.39 -74.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350692881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.601 kcal (2) G-P(sol) polarization free energy of solvation -75.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds