Wall clock time and date at job start Fri Apr 10 2020 14:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48501 * 109.46887 * 354.25947 * 3 2 1 5 5 H 1.48501 * 109.47191 * 114.25889 * 3 2 1 6 6 H 1.48498 * 109.47508 * 234.26035 * 3 2 1 7 7 C 1.38808 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00403 * 4.47733 * 7 2 1 9 9 N 1.36944 * 120.00234 * 184.47638 * 7 2 1 10 10 C 1.47063 * 136.05297 * 354.49311 * 9 7 2 11 11 C 1.53751 * 87.88499 * 152.96723 * 10 9 7 12 12 N 1.46505 * 114.57264 * 272.66221 * 11 10 9 13 13 C 1.34778 * 120.00119 * 248.66861 * 12 11 10 14 14 O 1.21609 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.47358 * 119.99936 * 179.97438 * 13 12 11 16 16 C 1.39953 * 120.21676 * 89.73260 * 15 13 12 17 17 F 1.35105 * 120.07630 * 359.97281 * 16 15 13 18 18 C 1.38140 * 119.84923 * 179.72053 * 16 15 13 19 19 C 1.38434 * 120.30099 * 0.53167 * 18 16 15 20 20 C 1.38104 * 120.45043 * 359.76742 * 19 18 16 21 21 C 1.38780 * 120.13956 * 359.95026 * 20 19 18 22 22 N 1.39282 * 120.15055 * 179.97438 * 21 20 19 23 23 C 1.34782 * 119.99743 * 34.41455 * 22 21 20 24 24 N 1.34774 * 119.99726 * 185.42753 * 23 22 21 25 25 O 1.21576 * 119.99786 * 5.42284 * 23 22 21 26 26 C 1.47067 * 136.06041 * 174.87015 * 9 7 2 27 27 H 0.97003 * 120.00285 * 185.00476 * 1 2 3 28 28 H 1.08997 * 113.47480 * 267.70073 * 10 9 7 29 29 H 1.09005 * 113.46855 * 38.13524 * 10 9 7 30 30 H 1.09004 * 114.08745 * 139.78409 * 11 10 9 31 31 H 0.96999 * 119.99774 * 68.67408 * 12 11 10 32 32 H 1.08003 * 119.85093 * 180.29511 * 18 16 15 33 33 H 1.08000 * 119.77472 * 179.74191 * 19 18 16 34 34 H 1.07996 * 119.92444 * 179.97438 * 20 19 18 35 35 H 0.96995 * 120.00053 * 214.41250 * 22 21 20 36 36 H 0.96992 * 120.00378 * 359.97438 * 24 23 22 37 37 H 0.97007 * 119.99547 * 180.02562 * 24 23 22 38 38 H 1.08994 * 113.46416 * 321.86207 * 26 9 7 39 39 H 1.08997 * 113.46449 * 92.30430 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2912 2.7429 -0.1400 5 1 2.9958 1.7588 1.2765 6 1 3.2059 1.6376 -1.1364 7 6 2.0102 -1.2021 -0.0005 8 1 1.4727 -2.1360 -0.0740 9 7 3.3765 -1.2040 0.0920 10 6 4.4382 -0.1866 0.1060 11 6 5.2926 -1.1714 0.9209 12 7 5.0888 -1.1005 2.3699 13 6 6.0695 -0.6311 3.1663 14 8 7.1235 -0.2659 2.6820 15 6 5.8642 -0.5593 4.6237 16 6 6.2017 -1.6470 5.4370 17 9 6.7173 -2.7687 4.8880 18 6 6.0115 -1.5694 6.8031 19 6 5.4782 -0.4245 7.3700 20 6 5.1350 0.6539 6.5785 21 6 5.3237 0.5980 5.2047 22 7 4.9771 1.6853 4.4062 23 6 5.1260 2.9402 4.8749 24 7 4.6899 3.9875 4.1472 25 8 5.6537 3.1274 5.9541 26 6 4.4281 -2.2248 0.2144 27 1 -0.4851 -0.8368 0.0733 28 1 4.8466 0.0284 -0.8814 29 1 4.1684 0.7148 0.6564 30 1 6.3441 -1.1909 0.6342 31 1 4.2479 -1.3915 2.7562 32 1 6.2764 -2.4070 7.4312 33 1 5.3292 -0.3745 8.4385 34 1 4.7192 1.5426 7.0297 35 1 4.6287 1.5394 3.5128 36 1 4.2692 3.8381 3.2861 37 1 4.7974 4.8907 4.4844 38 1 4.1497 -3.0598 0.8572 39 1 4.8338 -2.5471 -0.7445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031024561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:22 Heat of formation + Delta-G solvation = -37.910775 kcal Electronic energy + Delta-G solvation = -27692.063085 eV Core-core repulsion = 23550.616819 eV Total energy + Delta-G solvation = -4141.446266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08529 -42.09375 -41.14503 -39.89213 -38.97109 -35.98264 -35.17296 -34.74578 -34.15281 -32.10061 -30.49187 -29.71940 -27.06885 -25.72543 -24.60026 -24.13424 -22.18199 -22.02951 -21.23371 -19.84112 -19.54592 -19.52347 -18.89429 -17.81708 -17.76132 -17.53889 -16.98302 -16.70328 -16.40356 -16.25970 -16.01543 -15.89179 -15.67968 -15.51973 -15.34985 -15.09936 -14.65756 -14.29938 -13.67642 -13.58073 -13.35268 -13.13188 -12.90021 -12.82015 -12.46649 -12.07204 -11.74600 -11.51817 -11.36130 -11.24442 -11.17996 -11.04087 -10.84497 -10.11700 -10.00108 -9.36187 -9.22202 -8.61561 -5.46406 -0.19451 0.03484 1.20340 1.30274 1.48980 1.52323 1.69044 1.83010 1.93365 2.48159 2.55106 2.95712 3.06066 3.21287 3.27338 3.42059 3.54787 3.82578 3.90931 4.19135 4.23783 4.24577 4.30969 4.58673 4.63379 4.69682 4.74025 4.82990 4.87146 5.00652 5.16128 5.20503 5.29591 5.43060 5.52597 5.76518 5.85595 5.95760 6.30698 6.59854 6.70156 6.91948 7.32446 7.33089 8.25343 8.92372 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.005383 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.670691 B = 5200.283228 C = 6512.920275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.084 4.084 3 Si 1.114 2.886 4 H -0.307 1.307 5 H -0.257 1.257 6 H -0.275 1.275 7 C -0.287 4.287 8 H 0.049 0.951 9 N -0.651 5.651 10 C 0.071 3.929 11 C 0.116 3.884 12 N -0.683 5.683 13 C 0.571 3.429 14 O -0.558 6.558 15 C -0.213 4.213 16 C 0.137 3.863 17 F -0.137 7.137 18 C -0.160 4.160 19 C -0.038 4.038 20 C -0.140 4.140 21 C 0.218 3.782 22 N -0.685 5.685 23 C 0.708 3.292 24 N -0.839 5.839 25 O -0.604 6.604 26 C 0.116 3.884 27 H 0.246 0.754 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.411 0.589 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.146 0.854 35 H 0.412 0.588 36 H 0.412 0.588 37 H 0.431 0.569 38 H 0.057 0.943 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.119 1.784 13.782 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.276 4.276 3 Si 0.940 3.060 4 H -0.236 1.236 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.414 4.414 8 H 0.067 0.933 9 N -0.381 5.381 10 C -0.054 4.054 11 C 0.009 3.991 12 N -0.332 5.332 13 C 0.357 3.643 14 O -0.437 6.437 15 C -0.220 4.220 16 C 0.116 3.884 17 F -0.116 7.116 18 C -0.179 4.179 19 C -0.057 4.057 20 C -0.161 4.161 21 C 0.120 3.880 22 N -0.333 5.333 23 C 0.406 3.594 24 N -0.408 5.408 25 O -0.483 6.483 26 C -0.009 4.009 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.140 0.860 31 H 0.247 0.753 32 H 0.192 0.808 33 H 0.199 0.801 34 H 0.164 0.836 35 H 0.249 0.751 36 H 0.242 0.758 37 H 0.266 0.734 38 H 0.075 0.925 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.867 3.696 14.165 19.490 hybrid contribution -1.074 -2.065 -1.411 2.722 sum 11.793 1.631 12.754 17.447 Atomic orbital electron populations 1.71016 1.06777 1.28444 1.55399 1.27017 0.96434 1.04535 0.99596 0.83223 0.72762 0.71999 0.77967 1.23598 1.18376 1.20104 1.19990 0.80045 0.94391 1.46982 0.93265 1.46245 0.99793 1.04652 1.87400 1.23573 0.88339 0.94741 0.98763 1.22310 0.99567 0.97652 0.79567 1.45618 1.17701 1.63361 1.06508 1.18117 0.83379 0.76621 0.86199 1.90782 1.27313 1.49151 1.76428 1.19563 1.11585 0.97526 0.93327 1.17564 0.97356 0.81313 0.92142 1.91522 1.84223 1.49270 1.86548 1.21420 1.03363 1.01823 0.91306 1.21445 0.92432 0.89709 1.02071 1.21348 1.02695 1.01163 0.90847 1.17217 0.94343 0.85025 0.91429 1.42536 1.67264 1.04047 1.19406 1.15966 0.78675 0.80773 0.83945 1.42836 1.65214 1.08269 1.24500 1.90955 1.49830 1.84707 1.22782 1.22891 0.86585 0.93073 0.98396 0.94535 0.91327 0.92792 0.86045 0.75313 0.80758 0.80126 0.83635 0.75128 0.75767 0.73437 0.92483 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.87 13.70 21.65 0.30 -59.58 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 3 Si 1.11 48.87 25.12 68.60 1.72 50.59 16 4 H -0.31 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.26 -9.34 6.30 99.48 0.63 -8.71 16 6 H -0.28 -11.29 6.70 99.48 0.67 -10.63 16 7 C -0.29 -15.52 11.09 84.03 0.93 -14.59 16 8 H 0.05 2.93 8.05 -2.91 -0.02 2.90 16 9 N -0.65 -28.39 3.69 -738.09 -2.73 -31.11 16 10 C 0.07 2.62 5.76 83.27 0.48 3.10 16 11 C 0.12 3.65 4.61 45.55 0.21 3.86 16 12 N -0.68 -21.03 5.40 -444.87 -2.40 -23.43 16 13 C 0.57 18.30 5.95 86.64 0.52 18.82 16 14 O -0.56 -21.14 16.70 -4.06 -0.07 -21.20 16 15 C -0.21 -6.02 5.65 -19.96 -0.11 -6.14 16 16 C 0.14 3.39 7.29 22.66 0.17 3.55 16 17 F -0.14 -3.70 16.83 44.97 0.76 -2.94 16 18 C -0.16 -2.77 10.00 22.29 0.22 -2.55 16 19 C -0.04 -0.61 10.02 22.28 0.22 -0.39 16 20 C -0.14 -3.13 8.63 22.37 0.19 -2.94 16 21 C 0.22 5.82 6.26 38.59 0.24 6.06 16 22 N -0.69 -17.88 5.03 -316.63 -1.59 -19.47 16 23 C 0.71 18.00 8.56 179.05 1.53 19.53 16 24 N -0.84 -14.47 8.88 -184.76 -1.64 -16.11 16 25 O -0.60 -18.49 14.93 -3.96 -0.06 -18.55 16 26 C 0.12 3.96 8.44 83.18 0.70 4.66 16 27 H 0.25 15.32 8.73 -92.71 -0.81 14.51 16 28 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 29 H 0.05 2.00 4.02 -2.38 -0.01 1.99 16 30 H 0.12 3.58 7.45 -2.38 -0.02 3.56 16 31 H 0.41 12.57 8.75 -92.71 -0.81 11.76 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.15 3.34 6.49 -2.91 -0.02 3.32 16 35 H 0.41 10.61 8.18 -92.71 -0.76 9.85 16 36 H 0.41 5.88 8.85 -92.71 -0.82 5.06 16 37 H 0.43 5.61 8.93 -92.70 -0.83 4.78 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -76.15 338.07 -2.14 -78.29 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -2.20 Total: 34.81 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 5.77 Total: 28.72 kcal Atomic # 7 Polarization: -141.64 SS G_CDS: -8.06 Total: -149.71 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.13 Total: -39.76 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.76 Total: -2.94 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.72 Total: 50.59 kcal Total: -76.15 -2.14 -78.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031024561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.377 kcal (2) G-P(sol) polarization free energy of solvation -76.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds