Wall clock time and date at job start Fri Apr 10 2020 14:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99771 * 2 1 4 4 O 1.20831 * 120.00216 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00186 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47620 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47459 * 179.97438 * 6 5 3 8 8 C 1.36610 * 120.00221 * 264.18583 * 7 6 5 9 9 H 1.07998 * 119.99825 * 136.54243 * 8 7 6 10 10 C 1.39227 * 119.99564 * 316.54393 * 8 7 6 11 11 N 1.31245 * 120.00212 * 1.14300 * 10 8 7 12 12 Si 1.86797 * 119.99887 * 181.14573 * 10 8 7 13 13 H 1.48504 * 109.47551 * 89.99640 * 12 10 8 14 14 H 1.48500 * 109.47172 * 209.99725 * 12 10 8 15 15 H 1.48497 * 109.47266 * 330.00050 * 12 10 8 16 16 C 1.34778 * 119.99741 * 84.17828 * 7 6 5 17 17 O 1.21567 * 120.00434 * 5.46670 * 16 7 6 18 18 C 1.48050 * 119.99964 * 185.45799 * 16 7 6 19 19 N 1.33008 * 120.15499 * 76.40656 * 18 16 7 20 20 C 1.31813 * 119.98283 * 179.77093 * 19 18 16 21 21 C 1.39031 * 120.31020 * 0.50666 * 20 19 18 22 22 N 1.31823 * 120.32561 * 359.74605 * 21 20 19 23 23 C 1.32896 * 120.00779 * 359.97438 * 22 21 20 24 24 C 1.48219 * 120.15808 * 179.97438 * 23 22 21 25 25 N 1.34778 * 119.99983 * 4.15577 * 24 23 22 26 26 O 1.21511 * 120.00243 * 184.15849 * 24 23 22 27 27 H 1.08999 * 109.46987 * 59.99961 * 1 2 3 28 28 H 1.08998 * 109.46797 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47156 * 299.99954 * 1 2 3 30 30 H 1.09003 * 109.46847 * 59.99587 * 5 3 2 31 31 H 1.09004 * 109.46855 * 300.00612 * 5 3 2 32 32 H 1.09002 * 109.46696 * 59.99715 * 6 5 3 33 33 H 1.09000 * 109.46766 * 300.00426 * 6 5 3 34 34 H 0.96998 * 120.00206 * 180.02562 * 11 10 8 35 35 H 1.07997 * 119.84630 * 180.23131 * 20 19 18 36 36 H 1.08000 * 119.83853 * 179.77034 * 21 20 19 37 37 H 0.97007 * 119.99510 * 0.02562 * 25 24 23 38 38 H 0.96996 * 120.00194 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 0.0011 7 7 5.4631 2.8189 0.0023 8 6 6.1380 2.9743 1.1798 9 1 7.0275 2.3930 1.3731 10 6 5.6791 3.8819 2.1306 11 7 4.5857 4.5719 1.9052 12 14 6.6198 4.1176 3.7272 13 1 7.6306 5.1914 3.5524 14 1 5.6744 4.4988 4.8071 15 1 7.3023 2.8501 4.0914 16 6 6.1431 2.7361 -1.1584 17 8 5.5415 2.6979 -2.2141 18 6 7.6229 2.6920 -1.1478 19 7 8.2555 1.5708 -0.8133 20 6 9.5731 1.5339 -0.8093 21 6 10.3078 2.6660 -1.1435 22 7 9.6934 3.7851 -1.4722 23 6 8.3654 3.8350 -1.4857 24 6 7.6712 5.0916 -1.8542 25 7 8.3840 6.1621 -2.2573 26 8 6.4594 5.1568 -1.7928 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 3.6100 3.2361 0.8911 33 1 3.6107 3.2365 -0.8889 34 1 4.2662 5.2045 2.5675 35 1 10.0845 0.6213 -0.5410 36 1 11.3871 2.6284 -1.1342 37 1 9.3515 6.1099 -2.3066 38 1 7.9298 6.9843 -2.4987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152128152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:40 Heat of formation + Delta-G solvation = -91.455272 kcal Electronic energy + Delta-G solvation = -27831.236812 eV Core-core repulsion = 23675.095894 eV Total energy + Delta-G solvation = -4156.140919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05304 -39.93907 -38.58281 -38.23734 -36.07751 -34.92612 -34.30822 -33.02799 -31.96675 -31.57095 -30.37711 -27.47796 -25.45749 -25.21630 -24.97623 -22.96868 -21.03052 -20.37615 -19.45102 -18.08422 -17.80008 -17.70157 -17.12905 -16.15551 -16.08131 -15.99394 -15.84547 -15.25188 -14.96263 -14.73595 -14.35744 -14.08440 -13.60064 -13.51883 -13.41881 -13.17665 -12.83300 -12.52796 -12.09355 -11.90191 -11.66585 -11.53492 -11.23495 -11.10236 -10.96743 -10.71779 -10.45342 -10.41431 -10.00538 -9.93817 -9.90910 -9.32775 -9.30813 -9.14135 -8.98514 -8.54917 -7.53091 -6.30385 -4.20137 0.63053 1.20124 2.77622 3.07757 3.09148 3.15345 3.16933 3.18927 3.54943 3.63536 3.95870 4.09020 4.22865 4.27487 4.67566 4.90023 4.98728 5.15181 5.31036 5.37794 5.40825 5.42199 5.45524 5.70942 5.85749 5.97296 6.13645 6.40304 6.42499 6.82682 7.04002 7.08073 7.24541 7.32817 7.57996 7.65830 7.88014 7.94486 8.28957 8.35613 8.61678 9.01006 9.37734 9.83091 10.65357 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.005005 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.964655 B = 5593.589915 C = 6334.156666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.503 6.503 5 C -0.126 4.126 6 C 0.124 3.876 7 N -0.414 5.414 8 C -0.349 4.349 9 H 0.086 0.914 10 C 0.051 3.949 11 N -0.851 5.851 12 Si 0.914 3.086 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.268 1.268 16 C 0.545 3.455 17 O -0.571 6.571 18 C 0.163 3.837 19 N -0.418 5.418 20 C 0.073 3.927 21 C 0.036 3.964 22 N -0.416 5.416 23 C 0.052 3.948 24 C 0.570 3.430 25 N -0.844 5.844 26 O -0.476 6.476 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.273 0.727 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.405 0.595 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.548 -4.512 -2.299 9.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.310 3.690 4 O -0.389 6.389 5 C -0.165 4.165 6 C 0.000 4.000 7 N -0.131 5.131 8 C -0.477 4.477 9 H 0.104 0.896 10 C -0.157 4.157 11 N -0.487 5.487 12 Si 0.740 3.260 13 H -0.202 1.202 14 H -0.204 1.204 15 H -0.193 1.193 16 C 0.330 3.670 17 O -0.454 6.454 18 C 0.021 3.979 19 N -0.134 5.134 20 C -0.090 4.090 21 C -0.127 4.127 22 N -0.133 5.133 23 C -0.090 4.090 24 C 0.351 3.649 25 N -0.409 5.409 26 O -0.346 6.346 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.192 0.808 36 H 0.191 0.809 37 H 0.234 0.766 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.943 -4.169 -2.595 7.709 hybrid contribution 0.903 0.409 0.875 1.323 sum 6.846 -3.761 -1.720 7.998 Atomic orbital electron populations 1.23153 0.77507 1.02918 1.02315 1.86542 1.22642 1.34528 1.84759 1.24048 0.92339 0.80848 0.71777 1.90655 1.67212 1.36167 1.44890 1.21943 0.85880 1.03631 1.05024 1.21522 0.81153 0.90555 1.06745 1.42870 1.04583 1.61417 1.04184 1.19349 1.11578 1.22324 0.94475 0.89632 1.25552 0.96041 0.94286 0.99789 1.69555 1.20314 1.23341 1.35448 0.86134 0.79568 0.78964 0.81318 1.20239 1.20411 1.19266 1.17534 0.83549 0.80848 0.85116 1.90676 1.67899 1.55777 1.31018 1.22405 0.97908 0.88571 0.89060 1.68726 1.09612 1.25724 1.09306 1.24090 0.90681 0.99793 0.94430 1.23801 1.01833 0.89295 0.97738 1.68231 1.08525 1.27214 1.09352 1.22004 0.90144 0.95543 1.01310 1.17599 0.86711 0.82760 0.77874 1.43499 1.11497 1.14757 1.71179 1.91024 1.12250 1.81767 1.49569 0.92222 0.88717 0.92184 0.88692 0.87824 0.84633 0.91686 0.91634 0.80782 0.80862 0.76622 0.76552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.33 10.57 -39.26 -0.41 -6.74 16 3 C 0.47 9.50 7.96 36.01 0.29 9.79 16 4 O -0.50 -11.52 15.73 -18.75 -0.30 -11.81 16 5 C -0.13 -2.67 6.09 -27.88 -0.17 -2.84 16 6 C 0.12 3.16 4.19 -4.04 -0.02 3.14 16 7 N -0.41 -10.84 2.53 -115.83 -0.29 -11.14 16 8 C -0.35 -9.06 8.59 -15.06 -0.13 -9.19 16 9 H 0.09 2.17 7.18 -52.49 -0.38 1.79 16 10 C 0.05 1.31 5.34 -17.43 -0.09 1.21 16 11 N -0.85 -23.16 10.74 55.51 0.60 -22.56 16 12 Si 0.91 19.84 29.55 -169.99 -5.02 14.81 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 16 C 0.54 14.16 4.97 -12.24 -0.06 14.10 16 17 O -0.57 -16.10 16.04 -13.20 -0.21 -16.31 16 18 C 0.16 3.63 5.12 -82.51 -0.42 3.21 16 19 N -0.42 -8.02 10.16 -9.32 -0.09 -8.12 16 20 C 0.07 0.99 11.23 -17.27 -0.19 0.80 16 21 C 0.04 0.45 11.22 -17.26 -0.19 0.26 16 22 N -0.42 -6.54 9.72 -9.29 -0.09 -6.63 16 23 C 0.05 1.04 6.78 -82.48 -0.56 0.48 16 24 C 0.57 11.76 8.06 -12.16 -0.10 11.66 16 25 N -0.84 -12.30 8.86 30.62 0.27 -12.03 16 26 O -0.48 -12.20 14.73 -13.15 -0.19 -12.39 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 30 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 31 H 0.10 2.07 8.14 -51.93 -0.42 1.64 16 32 H 0.14 3.73 5.15 -51.93 -0.27 3.46 16 33 H 0.06 1.81 7.49 -51.93 -0.39 1.42 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.40 4.77 8.19 -40.82 -0.33 4.43 16 38 H 0.40 5.08 8.93 -40.82 -0.36 4.71 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -36.21 342.13 -5.00 -41.22 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -3.83 Total: 12.40 kcal Atomic # 6 Polarization: 34.73 SS G_CDS: -0.58 Total: 34.15 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.39 Total: -60.48 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.12 Total: -47.25 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.21 -5.00 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152128152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.237 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds