Wall clock time and date at job start Fri Apr 10 2020 14:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35679 * 117.00146 * 2 1 4 4 C 1.38666 * 119.64736 * 179.97438 * 3 2 1 5 5 C 1.39166 * 119.02208 * 180.29497 * 4 3 2 6 6 N 1.39406 * 120.83099 * 179.72820 * 5 4 3 7 7 C 1.34780 * 119.99920 * 212.47652 * 6 5 4 8 8 O 1.21364 * 119.99722 * 5.26326 * 7 6 5 9 9 C 1.49376 * 120.00072 * 185.26617 * 7 6 5 10 10 O 1.21354 * 119.99738 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99841 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00036 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47258 * 179.97438 * 12 11 9 14 14 O 1.21292 * 120.00145 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99600 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99664 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00136 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00053 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00082 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99915 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47011 * 89.99570 * 20 18 16 22 22 H 1.48500 * 109.47006 * 209.99530 * 20 18 16 23 23 H 1.48497 * 109.47287 * 329.99717 * 20 18 16 24 24 C 1.39614 * 118.33333 * 359.46894 * 5 4 3 25 25 C 1.37797 * 119.19514 * 0.53412 * 24 5 4 26 26 N 1.32055 * 120.91006 * 359.72448 * 25 24 5 27 27 H 1.09012 * 109.46562 * 299.99866 * 1 2 3 28 28 H 1.08993 * 109.47455 * 59.99354 * 1 2 3 29 29 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.48836 * 0.02973 * 4 3 2 31 31 H 0.96996 * 120.00620 * 32.48401 * 6 5 4 32 32 H 0.97003 * 120.00372 * 359.97438 * 11 9 7 33 33 H 1.09003 * 109.47211 * 299.99615 * 12 11 9 34 34 H 1.09001 * 109.47524 * 59.99329 * 12 11 9 35 35 H 0.96998 * 120.00739 * 359.97438 * 15 13 12 36 36 H 0.96994 * 120.00054 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.40306 * 180.28501 * 24 5 4 38 38 H 1.07996 * 119.54420 * 179.74453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2729 0.0005 5 6 4.0484 2.5197 0.0068 6 7 5.4383 2.6279 0.0132 7 6 6.0309 3.6602 0.6455 8 8 5.3621 4.4420 1.2893 9 6 7.5107 3.8420 0.5539 10 8 8.1794 3.0600 -0.0895 11 7 8.1033 4.8739 1.1866 12 6 9.5545 5.0526 1.0963 13 6 9.9608 6.2704 1.8856 14 8 9.1207 6.9250 2.4661 15 7 11.2577 6.6321 1.9464 16 6 11.6275 7.7396 2.6649 17 1 10.8795 8.3221 3.1825 18 6 12.9646 8.1123 2.7282 19 7 13.3191 9.1736 3.4172 20 14 14.2583 7.1046 1.8336 21 1 14.4331 7.6335 0.4570 22 1 15.5476 7.1928 2.5652 23 1 13.8227 5.6865 1.7675 24 6 3.2419 3.6593 0.0009 25 6 1.8717 3.5130 0.0004 26 7 1.3175 2.3144 -0.0001 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 4.0205 0.3685 0.0005 31 1 5.9789 1.9605 -0.4374 32 1 7.5688 5.4988 1.7012 33 1 10.0548 4.1730 1.5015 34 1 9.8402 5.1845 0.0527 35 1 11.9297 6.1084 1.4826 36 1 14.2524 9.4340 3.4611 37 1 3.6865 4.6435 0.0008 38 1 1.2425 4.3907 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323810746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:13 Heat of formation + Delta-G solvation = -87.110266 kcal Electronic energy + Delta-G solvation = -25310.502569 eV Core-core repulsion = 21154.550064 eV Total energy + Delta-G solvation = -4155.952505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56175 -40.57563 -39.26722 -38.39202 -37.97919 -35.89946 -34.68410 -33.91760 -31.88600 -31.55119 -30.94621 -28.62547 -27.63319 -25.63139 -24.21502 -23.96865 -22.42089 -20.65459 -19.92653 -19.38786 -18.97077 -18.23204 -17.42104 -16.83930 -16.63775 -16.32381 -16.10719 -15.99512 -15.63656 -15.38449 -15.06277 -14.91732 -14.42372 -14.32000 -14.10728 -13.89860 -13.60917 -13.24117 -12.73774 -12.62754 -12.29700 -12.28382 -12.22571 -11.91088 -11.69703 -11.30207 -11.28410 -10.70666 -10.23755 -10.12338 -9.82044 -9.77558 -9.30890 -9.20935 -8.88888 -8.86600 -8.38098 -6.46881 -4.00106 0.54251 0.85354 1.32538 1.87376 2.74660 2.91210 2.93776 2.98408 3.07583 3.31358 3.44343 3.45840 3.97318 3.98383 4.16588 4.39905 4.54555 4.71682 4.78075 4.91370 4.96776 5.06432 5.08895 5.25448 5.42129 5.44862 5.58700 5.59002 5.63414 5.67351 6.08772 6.12573 6.55881 6.85465 7.10729 7.36651 7.42039 7.51534 7.77171 7.94757 8.36604 8.74740 9.21805 9.53650 10.65005 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.042527 B = 0.001950 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.242499 B =14354.590928 C =14842.644006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.338 3.662 4 C -0.218 4.218 5 C 0.227 3.773 6 N -0.646 5.646 7 C 0.514 3.486 8 O -0.482 6.482 9 C 0.509 3.491 10 O -0.525 6.525 11 N -0.668 5.668 12 C 0.103 3.897 13 C 0.434 3.566 14 O -0.574 6.574 15 N -0.572 5.572 16 C -0.312 4.312 17 H 0.123 0.877 18 C 0.046 3.954 19 N -0.871 5.871 20 Si 0.880 3.120 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.211 4.211 25 C 0.160 3.840 26 N -0.551 5.551 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.428 0.572 32 H 0.426 0.574 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.375 0.625 36 H 0.277 0.723 37 H 0.151 0.849 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.970 -17.526 -10.110 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.159 3.841 4 C -0.241 4.241 5 C 0.124 3.876 6 N -0.293 5.293 7 C 0.296 3.704 8 O -0.352 6.352 9 C 0.288 3.712 10 O -0.402 6.402 11 N -0.323 5.323 12 C -0.024 4.024 13 C 0.219 3.781 14 O -0.458 6.458 15 N -0.210 5.210 16 C -0.440 4.440 17 H 0.140 0.860 18 C -0.158 4.158 19 N -0.509 5.509 20 Si 0.706 3.294 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.234 4.234 25 C 0.005 3.995 26 N -0.276 5.276 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.266 0.734 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.208 0.792 36 H 0.087 0.913 37 H 0.169 0.831 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.044 -17.188 -9.595 28.094 hybrid contribution 1.952 -0.540 -0.581 2.107 sum -18.092 -17.729 -10.176 27.298 Atomic orbital electron populations 1.22873 0.76941 1.02976 1.02624 1.86225 1.23109 1.24367 1.87764 1.19396 0.88482 0.84862 0.91352 1.20630 0.92747 0.97708 1.13058 1.17588 0.82725 0.93260 0.94076 1.43062 1.04812 1.27938 1.53519 1.20421 0.89386 0.81270 0.79314 1.90840 1.65200 1.42075 1.37127 1.19562 0.87425 0.82742 0.81456 1.90781 1.64753 1.43705 1.40973 1.45481 1.09008 1.28037 1.49820 1.21180 0.80014 0.99201 1.02023 1.19493 0.83750 0.87776 0.87064 1.90584 1.49951 1.55771 1.49503 1.42094 1.06111 1.26596 1.46175 1.19456 0.94711 1.02543 1.27329 0.85969 1.25078 0.97226 0.96472 0.97063 1.69614 1.18400 1.23897 1.39033 0.86664 0.82118 0.80120 0.80525 1.19349 1.19916 1.19243 1.22060 0.94570 0.99588 1.07159 1.22291 0.92130 0.93638 0.91449 1.67360 1.40851 0.98741 1.20687 0.92161 0.92182 0.88592 0.83520 0.73309 0.73351 0.88815 0.88806 0.79206 0.91282 0.83127 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.90 10.47 -18.74 -0.20 -3.10 16 3 C 0.34 3.47 7.48 -17.17 -0.13 3.34 16 4 C -0.22 -2.04 9.99 -39.08 -0.39 -2.43 16 5 C 0.23 2.29 6.32 -83.56 -0.53 1.76 16 6 N -0.65 -6.29 5.33 -10.15 -0.05 -6.34 16 7 C 0.51 6.32 7.65 -11.62 -0.09 6.23 16 8 O -0.48 -6.90 14.18 5.48 0.08 -6.82 16 9 C 0.51 6.89 7.89 -11.62 -0.09 6.80 16 10 O -0.52 -7.55 16.48 5.49 0.09 -7.46 16 11 N -0.67 -10.06 5.52 -61.94 -0.34 -10.40 16 12 C 0.10 1.61 6.15 -5.19 -0.03 1.57 16 13 C 0.43 9.08 7.85 -10.98 -0.09 8.99 16 14 O -0.57 -14.19 15.24 5.55 0.08 -14.11 16 15 N -0.57 -12.71 5.09 -10.96 -0.06 -12.76 16 16 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 17 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 18 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.37 13.96 55.50 0.77 -23.59 16 20 Si 0.88 18.33 27.74 -169.99 -4.71 13.62 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.03 6.52 56.52 0.37 -4.66 16 24 C -0.21 -2.15 8.73 -39.23 -0.34 -2.49 16 25 C 0.16 1.47 11.17 -17.62 -0.20 1.27 16 26 N -0.55 -5.67 9.21 -13.41 -0.12 -5.79 16 27 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 28 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.43 3.30 8.30 -40.82 -0.34 2.96 16 32 H 0.43 6.91 6.91 -40.82 -0.28 6.62 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.37 7.22 5.76 -40.82 -0.24 6.98 16 36 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.15 1.60 6.48 -52.49 -0.34 1.26 16 38 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -32.77 343.12 -4.08 -36.85 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -3.71 Total: 15.80 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: -1.08 Total: 18.95 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.20 Total: -58.89 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: 0.06 Total: -31.49 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.71 Total: 13.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.77 -4.08 -36.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323810746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.265 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds