Wall clock time and date at job start Fri Apr 10 2020 14:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35679 * 117.00146 * 2 1 4 4 C 1.38666 * 119.64736 * 179.97438 * 3 2 1 5 5 C 1.39166 * 119.02208 * 180.29497 * 4 3 2 6 6 N 1.39406 * 120.83099 * 179.72820 * 5 4 3 7 7 C 1.34780 * 119.99920 * 212.47652 * 6 5 4 8 8 O 1.21364 * 119.99722 * 5.26326 * 7 6 5 9 9 C 1.49376 * 120.00072 * 185.26617 * 7 6 5 10 10 O 1.21354 * 119.99738 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99841 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00036 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47258 * 179.97438 * 12 11 9 14 14 O 1.21292 * 120.00145 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99600 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99664 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00136 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00053 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00082 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99915 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47011 * 89.99570 * 20 18 16 22 22 H 1.48500 * 109.47006 * 209.99530 * 20 18 16 23 23 H 1.48497 * 109.47287 * 329.99717 * 20 18 16 24 24 C 1.39614 * 118.33333 * 359.46894 * 5 4 3 25 25 C 1.37797 * 119.19514 * 0.53412 * 24 5 4 26 26 N 1.32055 * 120.91006 * 359.72448 * 25 24 5 27 27 H 1.09012 * 109.46562 * 299.99866 * 1 2 3 28 28 H 1.08993 * 109.47455 * 59.99354 * 1 2 3 29 29 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.48836 * 0.02973 * 4 3 2 31 31 H 0.96996 * 120.00620 * 32.48401 * 6 5 4 32 32 H 0.97003 * 120.00372 * 359.97438 * 11 9 7 33 33 H 1.09003 * 109.47211 * 299.99615 * 12 11 9 34 34 H 1.09001 * 109.47524 * 59.99329 * 12 11 9 35 35 H 0.96998 * 120.00739 * 359.97438 * 15 13 12 36 36 H 0.96994 * 120.00054 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.40306 * 180.28501 * 24 5 4 38 38 H 1.07996 * 119.54420 * 179.74453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2729 0.0005 5 6 4.0484 2.5197 0.0068 6 7 5.4383 2.6279 0.0132 7 6 6.0309 3.6602 0.6455 8 8 5.3621 4.4420 1.2893 9 6 7.5107 3.8420 0.5539 10 8 8.1794 3.0600 -0.0895 11 7 8.1033 4.8739 1.1866 12 6 9.5545 5.0526 1.0963 13 6 9.9608 6.2704 1.8856 14 8 9.1207 6.9250 2.4661 15 7 11.2577 6.6321 1.9464 16 6 11.6275 7.7396 2.6649 17 1 10.8795 8.3221 3.1825 18 6 12.9646 8.1123 2.7282 19 7 13.3191 9.1736 3.4172 20 14 14.2583 7.1046 1.8336 21 1 14.4331 7.6335 0.4570 22 1 15.5476 7.1928 2.5652 23 1 13.8227 5.6865 1.7675 24 6 3.2419 3.6593 0.0009 25 6 1.8717 3.5130 0.0004 26 7 1.3175 2.3144 -0.0001 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 4.0205 0.3685 0.0005 31 1 5.9789 1.9605 -0.4374 32 1 7.5688 5.4988 1.7012 33 1 10.0548 4.1730 1.5015 34 1 9.8402 5.1845 0.0527 35 1 11.9297 6.1084 1.4826 36 1 14.2524 9.4340 3.4611 37 1 3.6865 4.6435 0.0008 38 1 1.2425 4.3907 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323810746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:12 Heat of formation + Delta-G solvation = -116.637468 kcal Electronic energy + Delta-G solvation = -25311.782965 eV Core-core repulsion = 21154.550064 eV Total energy + Delta-G solvation = -4157.232901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45729 -41.46725 -40.57625 -39.75072 -38.78541 -36.84520 -36.24955 -35.40359 -33.84507 -32.32542 -31.68724 -29.99039 -28.23641 -27.01467 -25.62796 -24.70442 -23.31978 -21.64555 -21.53437 -20.78657 -20.12380 -19.50157 -18.32858 -17.82920 -17.54240 -17.31082 -17.15218 -16.99627 -16.84083 -16.65304 -16.39194 -16.21879 -15.55920 -15.31816 -14.96227 -14.90391 -14.84752 -14.44160 -14.34838 -14.06520 -13.67699 -13.45645 -13.00323 -12.96346 -12.73409 -12.43926 -12.40173 -12.01324 -11.99357 -11.57875 -11.15725 -10.72592 -10.67071 -10.47924 -10.31729 -10.00744 -9.59976 -8.45012 -6.07942 -0.32333 0.11108 0.40307 0.90806 1.32154 1.35466 1.45974 1.77579 1.90285 2.01594 2.21741 2.37794 2.69636 2.79357 3.11050 3.15120 3.33007 3.81210 3.94776 3.99484 4.04559 4.33366 4.36196 4.38967 4.46454 4.46944 4.67352 4.81006 4.87629 4.90056 4.95046 5.34899 5.47060 5.68232 5.87737 6.10000 6.17873 6.42081 6.48471 6.67136 6.78331 6.78393 7.27849 7.77881 8.71400 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.042527 B = 0.001950 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.242499 B =14354.590928 C =14842.644006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.325 3.675 4 C -0.214 4.214 5 C 0.215 3.785 6 N -0.629 5.629 7 C 0.520 3.480 8 O -0.506 6.506 9 C 0.519 3.481 10 O -0.527 6.527 11 N -0.678 5.678 12 C 0.115 3.885 13 C 0.440 3.560 14 O -0.616 6.616 15 N -0.574 5.574 16 C -0.333 4.333 17 H 0.061 0.939 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.961 3.039 21 H -0.256 1.256 22 H -0.276 1.276 23 H -0.227 1.227 24 C -0.221 4.221 25 C 0.160 3.840 26 N -0.560 5.560 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.123 0.877 30 H 0.166 0.834 31 H 0.438 0.562 32 H 0.420 0.580 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.394 0.606 36 H 0.281 0.719 37 H 0.144 0.856 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.650 -20.617 -12.124 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.146 3.854 4 C -0.237 4.237 5 C 0.112 3.888 6 N -0.277 5.277 7 C 0.302 3.698 8 O -0.379 6.379 9 C 0.299 3.701 10 O -0.405 6.405 11 N -0.333 5.333 12 C -0.011 4.011 13 C 0.228 3.772 14 O -0.502 6.502 15 N -0.214 5.214 16 C -0.463 4.463 17 H 0.079 0.921 18 C -0.209 4.209 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.180 1.180 22 H -0.201 1.201 23 H -0.150 1.150 24 C -0.244 4.244 25 C 0.005 3.995 26 N -0.286 5.286 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.184 0.816 31 H 0.280 0.720 32 H 0.259 0.741 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.747 -20.344 -11.645 30.651 hybrid contribution 1.641 0.420 0.070 1.695 sum -18.107 -19.924 -11.576 29.305 Atomic orbital electron populations 1.23083 0.75546 1.04728 1.02420 1.86216 1.24542 1.23997 1.87623 1.19653 0.89002 0.85194 0.91515 1.20788 0.92718 0.98078 1.12137 1.17693 0.82636 0.93665 0.94793 1.42893 1.04911 1.27242 1.52630 1.20161 0.88716 0.81581 0.79370 1.90844 1.65396 1.43192 1.38496 1.19590 0.87816 0.81989 0.80747 1.90781 1.65021 1.43657 1.41006 1.45522 1.08776 1.28583 1.50425 1.21154 0.80607 0.96843 1.02534 1.20515 0.82783 0.88339 0.85605 1.90576 1.51181 1.57545 1.50930 1.41871 1.07190 1.25869 1.46443 1.19025 0.94209 1.04255 1.28763 0.92082 1.26118 0.99576 0.97620 0.97585 1.69788 1.19356 1.26320 1.41122 0.85414 0.77559 0.80039 0.78896 1.18039 1.20100 1.15050 1.22127 0.95168 0.99434 1.07661 1.22689 0.92149 0.94166 0.90528 1.67411 1.41199 0.99091 1.20907 0.92530 0.92184 0.85935 0.81605 0.72035 0.74111 0.86021 0.85897 0.76972 0.90924 0.83791 0.79196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 113.37 1.18 1.60 16 2 O -0.32 -5.51 10.47 -89.97 -0.94 -6.45 16 3 C 0.33 6.26 7.48 84.72 0.63 6.89 16 4 C -0.21 -3.66 9.99 22.59 0.23 -3.44 16 5 C 0.21 4.05 6.32 38.49 0.24 4.29 16 6 N -0.63 -11.15 5.33 -304.36 -1.62 -12.77 16 7 C 0.52 12.08 7.65 87.25 0.67 12.75 16 8 O -0.51 -14.28 14.18 -3.29 -0.05 -14.33 16 9 C 0.52 12.94 7.89 87.25 0.69 13.62 16 10 O -0.53 -13.51 16.48 -3.26 -0.05 -13.57 16 11 N -0.68 -19.30 5.52 -468.23 -2.58 -21.89 16 12 C 0.12 3.26 6.15 85.63 0.53 3.79 16 13 C 0.44 18.16 7.85 87.66 0.69 18.85 16 14 O -0.62 -31.33 15.24 -3.07 -0.05 -31.38 16 15 N -0.57 -25.02 5.09 -306.97 -1.56 -26.58 16 16 C -0.33 -18.50 10.16 84.04 0.85 -17.65 16 17 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 18 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 19 N -0.93 -53.73 13.96 21.66 0.30 -53.42 16 20 Si 0.96 36.53 27.74 68.60 1.90 38.43 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 22 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.23 -7.12 6.52 99.48 0.65 -6.47 16 24 C -0.22 -4.33 8.73 22.50 0.20 -4.13 16 25 C 0.16 2.76 11.17 84.55 0.94 3.70 16 26 N -0.56 -10.90 9.21 -309.17 -2.85 -13.75 16 27 H 0.06 0.69 8.10 -2.38 -0.02 0.67 16 28 H 0.06 0.68 8.10 -2.39 -0.02 0.67 16 29 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.44 5.74 8.30 -92.71 -0.77 4.97 16 32 H 0.42 13.48 6.91 -92.71 -0.64 12.84 16 33 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.39 13.96 5.76 -92.71 -0.53 13.43 16 36 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.14 3.01 6.48 -2.91 -0.02 2.99 16 38 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -75.00 343.12 -1.03 -76.03 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.84 Total: 39.42 kcal Atomic # 6 Polarization: 32.95 SS G_CDS: 7.31 Total: 40.26 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -8.32 Total: -128.41 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -1.09 Total: -65.73 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 1.90 Total: 38.43 kcal Total: -75.00 -1.03 -76.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323810746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.611 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds