Wall clock time and date at job start Fri Apr 10 2020 14:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46848 * 2 1 4 4 S 1.65602 * 119.99672 * 165.00482 * 3 2 1 5 5 O 1.42098 * 104.27501 * 308.92322 * 4 3 2 6 6 O 1.42100 * 104.27874 * 181.07010 * 4 3 2 7 7 C 1.81397 * 104.45192 * 64.99744 * 4 3 2 8 8 H 1.08993 * 110.87765 * 67.39293 * 7 4 3 9 9 C 1.55142 * 110.99146 * 303.54463 * 7 4 3 10 10 C 1.54314 * 103.02083 * 206.21872 * 9 7 4 11 11 N 1.47437 * 107.23392 * 22.28122 * 10 9 7 12 12 C 1.46910 * 110.99857 * 123.25790 * 11 10 9 13 13 C 1.53001 * 109.46762 * 69.87474 * 12 11 10 14 14 C 1.53006 * 109.46794 * 180.02562 * 13 12 11 15 15 S 1.80998 * 109.46890 * 179.97438 * 14 13 12 16 16 C 1.76204 * 99.99645 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00020 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 90.00077 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00257 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00251 * 20 18 16 24 24 C 1.47848 * 108.56583 * 0.99618 * 11 10 9 25 25 H 1.09001 * 109.47253 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 300.00127 * 1 2 3 27 27 H 1.09001 * 109.47103 * 59.99819 * 1 2 3 28 28 H 1.08996 * 109.46545 * 240.00076 * 2 1 3 29 29 H 1.09001 * 109.47103 * 120.00181 * 2 1 3 30 30 H 0.96999 * 120.00017 * 344.99870 * 3 2 1 31 31 H 1.08999 * 110.70705 * 87.83178 * 9 7 4 32 32 H 1.08998 * 110.70788 * 324.60574 * 9 7 4 33 33 H 1.09001 * 109.88603 * 262.87927 * 10 9 7 34 34 H 1.08999 * 109.88865 * 141.69167 * 10 9 7 35 35 H 1.09001 * 109.46543 * 309.88002 * 12 11 10 36 36 H 1.08994 * 109.46958 * 189.87722 * 12 11 10 37 37 H 1.08991 * 109.47033 * 60.00365 * 13 12 11 38 38 H 1.09004 * 109.47086 * 299.99717 * 13 12 11 39 39 H 1.09004 * 109.47207 * 60.00074 * 14 13 12 40 40 H 1.08994 * 109.46877 * 300.00218 * 14 13 12 41 41 H 0.96993 * 120.00092 * 359.97438 * 19 18 16 42 42 H 1.08996 * 110.37652 * 94.73382 * 24 11 10 43 43 H 1.09003 * 110.36677 * 217.07185 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7001 0.3711 5 8 3.8180 1.0143 1.5964 6 8 3.6995 3.1157 0.2964 7 6 4.5450 0.9243 -0.9692 8 1 4.3685 1.4358 -1.9153 9 6 4.2100 -0.5862 -1.0830 10 6 5.4885 -1.1794 -1.7116 11 7 6.5906 -0.2425 -1.4266 12 6 7.6837 -0.9169 -0.7134 13 6 8.3837 -1.8940 -1.6600 14 6 9.5218 -2.5969 -0.9171 15 16 10.3495 -3.7534 -2.0367 16 6 11.5783 -4.4017 -0.9530 17 1 11.6353 -4.0546 0.0681 18 6 12.4723 -5.3594 -1.4114 19 7 12.4025 -5.7829 -2.6558 20 14 13.7746 -6.0474 -0.2625 21 1 13.2370 -7.2424 0.4362 22 1 14.1473 -5.0151 0.7380 23 1 14.9749 -6.4315 -1.0480 24 6 6.0566 0.8850 -0.6332 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.4149 2.1090 -0.2174 31 1 3.3513 -0.7425 -1.7359 32 1 4.0296 -1.0163 -0.0979 33 1 5.3586 -1.2824 -2.7889 34 1 5.7036 -2.1512 -1.2673 35 1 7.2790 -1.4632 0.1385 36 1 8.4005 -0.1748 -0.3620 37 1 8.7883 -1.3477 -2.5119 38 1 7.6668 -2.6362 -2.0114 39 1 9.1168 -3.1433 -0.0653 40 1 10.2387 -1.8550 -0.5654 41 1 11.7260 -5.4260 -3.2523 42 1 6.2042 0.7035 0.4314 43 1 6.5357 1.8181 -0.9299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092843978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:01 Heat of formation + Delta-G solvation = -84.553670 kcal Electronic energy + Delta-G solvation = -22877.871306 eV Core-core repulsion = 19403.766829 eV Total energy + Delta-G solvation = -3474.104477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.46699 -37.56063 -36.53097 -36.31175 -34.51592 -32.53813 -30.99757 -30.25487 -29.56031 -25.85653 -24.74806 -23.59447 -22.28522 -21.99870 -20.51520 -19.81492 -18.12642 -18.00638 -17.44517 -17.07322 -16.32015 -15.47569 -15.26407 -15.21625 -14.72406 -14.47260 -14.07173 -13.96777 -13.83815 -13.65874 -13.11145 -12.82971 -12.58569 -12.51962 -12.46869 -12.43645 -12.34205 -12.20683 -12.05737 -11.96338 -11.89829 -11.31084 -11.24116 -11.07722 -10.92246 -10.87116 -10.48828 -10.19402 -9.94818 -9.37412 -9.00882 -8.58723 -8.31722 -6.70664 -6.63164 -4.01037 -0.20859 2.22321 3.21569 3.27578 3.37358 3.39956 3.53125 3.56267 3.73509 3.90457 4.07482 4.24978 4.35281 4.40250 4.57676 4.71224 4.76210 4.84368 4.92444 5.04903 5.14067 5.17498 5.20804 5.22832 5.27878 5.35861 5.40538 5.44739 5.51835 5.59604 5.60357 5.70341 5.78863 5.92165 6.19122 6.43514 6.44015 6.59299 6.68957 6.85660 7.94989 8.49852 9.26787 10.81268 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.029058 B = 0.002102 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.349709 B =13320.360565 C =13530.258266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -1.118 6.118 4 S 2.619 3.381 5 O -0.950 6.950 6 O -0.957 6.957 7 C -0.604 4.604 8 H 0.150 0.850 9 C -0.123 4.123 10 C 0.044 3.956 11 N -0.518 5.518 12 C 0.049 3.951 13 C -0.093 4.093 14 C -0.091 4.091 15 S -0.189 6.189 16 C -0.588 4.588 17 H 0.066 0.934 18 C 0.032 3.968 19 N -0.887 5.887 20 Si 1.087 2.913 21 H -0.284 1.284 22 H -0.287 1.287 23 H -0.280 1.280 24 C 0.064 3.936 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.417 0.583 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.277 0.723 42 H 0.060 0.940 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 14.088 3.520 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.878 5.878 4 S 2.710 3.290 5 O -0.940 6.940 6 O -0.947 6.947 7 C -0.714 4.714 8 H 0.168 0.832 9 C -0.162 4.162 10 C -0.084 4.084 11 N -0.243 5.243 12 C -0.080 4.080 13 C -0.132 4.132 14 C -0.240 4.240 15 S 0.039 5.961 16 C -0.736 4.736 17 H 0.084 0.916 18 C -0.178 4.178 19 N -0.522 5.522 20 Si 0.913 3.087 21 H -0.211 1.211 22 H -0.213 1.213 23 H -0.205 1.205 24 C -0.065 4.065 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.252 0.748 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.465 13.276 2.833 27.109 hybrid contribution -1.522 1.045 1.324 2.272 sum -24.987 14.320 4.157 29.098 Atomic orbital electron populations 1.21966 0.94004 1.03154 1.02789 1.21576 0.96732 0.81643 1.02529 1.55588 1.28779 1.14724 1.88729 1.04801 0.73873 0.74256 0.76030 1.93612 1.84684 1.76248 1.39471 1.93614 1.85404 1.28245 1.87414 1.31888 1.09631 1.09069 1.20773 0.83172 1.22884 1.00547 0.89814 1.02951 1.22885 0.88184 0.95534 1.01791 1.63643 1.08685 1.08536 1.43393 1.22457 0.93141 0.97071 0.95353 1.21285 0.96557 0.97118 0.98247 1.23050 0.99109 1.00626 1.01228 1.84147 1.40584 1.49871 1.21501 1.23562 1.19520 1.30884 0.99624 0.91619 1.26091 0.99201 0.93752 0.98730 1.70771 1.34620 1.41634 1.05143 0.83285 0.75293 0.75894 0.74226 1.21067 1.21285 1.20510 1.22820 0.88650 0.97713 0.97325 0.90830 0.91787 0.91885 0.91028 0.90117 0.74816 0.88663 0.89816 0.89646 0.91299 0.94150 0.90437 0.90643 0.91615 0.92029 0.91798 0.91069 0.92179 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 10.05 37.16 0.37 -0.15 16 2 C 0.10 0.45 5.61 -4.04 -0.02 0.43 16 3 N -1.12 -6.15 5.89 -10.61 -0.06 -6.21 16 4 S 2.62 22.12 5.14 -107.50 -0.55 21.57 16 5 O -0.95 -11.22 17.13 -57.54 -0.99 -12.21 16 6 O -0.96 -11.04 18.08 -57.54 -1.04 -12.08 16 7 C -0.60 -4.41 3.78 -24.59 -0.09 -4.50 16 8 H 0.15 0.85 8.14 -51.93 -0.42 0.42 16 9 C -0.12 -0.83 4.66 -24.91 -0.12 -0.95 16 10 C 0.04 0.43 6.20 -2.84 -0.02 0.41 16 11 N -0.52 -5.92 5.16 -231.25 -1.19 -7.12 16 12 C 0.05 0.64 4.54 -3.82 -0.02 0.62 16 13 C -0.09 -1.49 5.25 -26.73 -0.14 -1.63 16 14 C -0.09 -1.82 5.67 37.16 0.21 -1.61 16 15 S -0.19 -4.91 20.46 -107.50 -2.20 -7.11 16 16 C -0.59 -17.14 9.50 30.94 0.29 -16.85 16 17 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 18 C 0.03 0.94 5.49 -17.43 -0.10 0.85 16 19 N -0.89 -27.45 13.67 55.49 0.76 -26.69 16 20 Si 1.09 25.24 29.92 -169.99 -5.09 20.16 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.06 0.62 6.17 -2.30 -0.01 0.61 16 25 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.21 5.28 -51.93 -0.27 -0.07 16 29 H 0.08 0.43 7.69 -51.93 -0.40 0.03 16 30 H 0.42 1.67 8.62 -34.48 -0.30 1.37 16 31 H 0.10 0.39 6.31 -51.93 -0.33 0.07 16 32 H 0.08 0.56 7.47 -51.93 -0.39 0.17 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 6.91 -51.93 -0.36 0.34 16 35 H 0.04 0.52 7.96 -51.93 -0.41 0.10 16 36 H 0.08 0.98 8.07 -51.93 -0.42 0.57 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.04 7.14 -51.93 -0.37 0.67 16 39 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 40 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.28 8.66 7.12 -40.82 -0.29 8.37 16 42 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -37.05 364.91 -11.44 -48.50 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.94 Total: -1.52 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 0.36 Total: -22.78 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.50 Total: -40.02 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -2.03 Total: -24.29 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.16 kcal Atomic # 16 Polarization: 17.21 SS G_CDS: -2.75 Total: 14.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.05 -11.44 -48.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092843978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.058 kcal (2) G-P(sol) polarization free energy of solvation -37.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds