Wall clock time and date at job start Fri Apr 10 2020 14:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46848 * 2 1 4 4 S 1.65602 * 119.99672 * 165.00482 * 3 2 1 5 5 O 1.42098 * 104.27501 * 308.92322 * 4 3 2 6 6 O 1.42100 * 104.27874 * 181.07010 * 4 3 2 7 7 C 1.81397 * 104.45192 * 64.99744 * 4 3 2 8 8 H 1.08993 * 110.87765 * 67.39293 * 7 4 3 9 9 C 1.55142 * 110.99146 * 303.54463 * 7 4 3 10 10 C 1.54314 * 103.02083 * 206.21872 * 9 7 4 11 11 N 1.47437 * 107.23392 * 22.28122 * 10 9 7 12 12 C 1.46910 * 110.99857 * 123.25790 * 11 10 9 13 13 C 1.53001 * 109.46762 * 69.87474 * 12 11 10 14 14 C 1.53006 * 109.46794 * 180.02562 * 13 12 11 15 15 S 1.80998 * 109.46890 * 179.97438 * 14 13 12 16 16 C 1.76204 * 99.99645 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00020 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 90.00077 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00257 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00251 * 20 18 16 24 24 C 1.47848 * 108.56583 * 0.99618 * 11 10 9 25 25 H 1.09001 * 109.47253 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 300.00127 * 1 2 3 27 27 H 1.09001 * 109.47103 * 59.99819 * 1 2 3 28 28 H 1.08996 * 109.46545 * 240.00076 * 2 1 3 29 29 H 1.09001 * 109.47103 * 120.00181 * 2 1 3 30 30 H 0.96999 * 120.00017 * 344.99870 * 3 2 1 31 31 H 1.08999 * 110.70705 * 87.83178 * 9 7 4 32 32 H 1.08998 * 110.70788 * 324.60574 * 9 7 4 33 33 H 1.09001 * 109.88603 * 262.87927 * 10 9 7 34 34 H 1.08999 * 109.88865 * 141.69167 * 10 9 7 35 35 H 1.09001 * 109.46543 * 309.88002 * 12 11 10 36 36 H 1.08994 * 109.46958 * 189.87722 * 12 11 10 37 37 H 1.08991 * 109.47033 * 60.00365 * 13 12 11 38 38 H 1.09004 * 109.47086 * 299.99717 * 13 12 11 39 39 H 1.09004 * 109.47207 * 60.00074 * 14 13 12 40 40 H 1.08994 * 109.46877 * 300.00218 * 14 13 12 41 41 H 0.96993 * 120.00092 * 359.97438 * 19 18 16 42 42 H 1.08996 * 110.37652 * 94.73382 * 24 11 10 43 43 H 1.09003 * 110.36677 * 217.07185 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7001 0.3711 5 8 3.8180 1.0143 1.5964 6 8 3.6995 3.1157 0.2964 7 6 4.5450 0.9243 -0.9692 8 1 4.3685 1.4358 -1.9153 9 6 4.2100 -0.5862 -1.0830 10 6 5.4885 -1.1794 -1.7116 11 7 6.5906 -0.2425 -1.4266 12 6 7.6837 -0.9169 -0.7134 13 6 8.3837 -1.8940 -1.6600 14 6 9.5218 -2.5969 -0.9171 15 16 10.3495 -3.7534 -2.0367 16 6 11.5783 -4.4017 -0.9530 17 1 11.6353 -4.0546 0.0681 18 6 12.4723 -5.3594 -1.4114 19 7 12.4025 -5.7829 -2.6558 20 14 13.7746 -6.0474 -0.2625 21 1 13.2370 -7.2424 0.4362 22 1 14.1473 -5.0151 0.7380 23 1 14.9749 -6.4315 -1.0480 24 6 6.0566 0.8850 -0.6332 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.4149 2.1090 -0.2174 31 1 3.3513 -0.7425 -1.7359 32 1 4.0296 -1.0163 -0.0979 33 1 5.3586 -1.2824 -2.7889 34 1 5.7036 -2.1512 -1.2673 35 1 7.2790 -1.4632 0.1385 36 1 8.4005 -0.1748 -0.3620 37 1 8.7883 -1.3477 -2.5119 38 1 7.6668 -2.6362 -2.0114 39 1 9.1168 -3.1433 -0.0653 40 1 10.2387 -1.8550 -0.5654 41 1 11.7260 -5.4260 -3.2523 42 1 6.2042 0.7035 0.4314 43 1 6.5357 1.8181 -0.9299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092843978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:00 Heat of formation + Delta-G solvation = -113.630969 kcal Electronic energy + Delta-G solvation = -22879.132193 eV Core-core repulsion = 19403.766829 eV Total energy + Delta-G solvation = -3475.365363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25549 -38.33692 -37.19281 -36.87134 -35.65296 -34.76501 -32.03504 -30.60843 -30.25616 -27.50266 -26.50664 -24.02611 -23.13735 -22.87980 -21.53697 -20.44838 -20.25370 -18.65203 -18.12384 -17.75712 -17.01886 -16.80835 -16.18804 -15.95728 -15.79624 -15.67960 -15.41376 -15.21891 -14.70474 -14.68066 -14.28000 -14.11430 -14.06226 -13.46040 -13.31668 -13.23096 -13.07325 -12.89048 -12.78216 -12.65376 -12.60397 -12.56263 -12.41645 -12.35909 -11.99852 -11.97288 -11.77914 -11.56906 -11.23155 -11.11286 -10.42168 -10.37454 -9.45449 -8.94922 -8.87338 -6.28972 -0.87211 1.40656 1.56108 1.58420 1.65463 1.77866 2.31619 2.60097 2.79907 2.99175 3.01359 3.11768 3.18196 3.41580 3.84546 3.89759 4.01117 4.03447 4.13099 4.17236 4.27230 4.28195 4.30887 4.45078 4.48430 4.53870 4.61883 4.66821 4.70590 4.79044 4.82712 5.01385 5.09586 5.13785 5.15661 5.19557 5.36165 5.62141 5.83172 5.91051 6.07781 6.15652 7.03376 8.49786 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.029058 B = 0.002102 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.349709 B =13320.360565 C =13530.258266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -1.108 6.108 4 S 2.633 3.367 5 O -0.988 6.988 6 O -0.991 6.991 7 C -0.588 4.588 8 H 0.174 0.826 9 C -0.121 4.121 10 C 0.036 3.964 11 N -0.528 5.528 12 C 0.057 3.943 13 C -0.079 4.079 14 C -0.069 4.069 15 S -0.241 6.241 16 C -0.606 4.606 17 H 0.064 0.936 18 C -0.019 4.019 19 N -0.911 5.911 20 Si 1.136 2.864 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.275 1.275 24 C 0.051 3.949 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.426 0.574 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.263 0.737 42 H 0.056 0.944 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.511 14.396 3.821 30.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.034 4.034 3 N -0.871 5.871 4 S 2.727 3.273 5 O -0.978 6.978 6 O -0.981 6.981 7 C -0.699 4.699 8 H 0.191 0.809 9 C -0.159 4.159 10 C -0.092 4.092 11 N -0.252 5.252 12 C -0.073 4.073 13 C -0.118 4.118 14 C -0.219 4.219 15 S -0.013 6.013 16 C -0.753 4.753 17 H 0.082 0.918 18 C -0.222 4.222 19 N -0.547 5.547 20 Si 0.954 3.046 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.200 1.200 24 C -0.078 4.078 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.262 0.738 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.856 13.615 3.143 28.514 hybrid contribution -1.203 0.993 1.198 1.967 sum -26.059 14.608 4.341 30.188 Atomic orbital electron populations 1.21981 0.93008 1.03893 1.02984 1.21801 0.97632 0.80810 1.03120 1.55300 1.27588 1.15711 1.88506 1.04103 0.74400 0.73098 0.75693 1.93564 1.85539 1.76651 1.42053 1.93565 1.86202 1.30452 1.87907 1.31771 1.07589 1.09647 1.20894 0.80885 1.22982 1.00445 0.88804 1.03695 1.22999 0.88850 0.95036 1.02352 1.63600 1.09131 1.09155 1.43348 1.22266 0.93865 0.96546 0.94589 1.21142 0.95187 0.97359 0.98132 1.23046 0.99681 0.99035 1.00124 1.84181 1.41016 1.52035 1.24024 1.23924 1.20330 1.31118 0.99946 0.91785 1.27776 1.01218 0.93860 0.99350 1.70886 1.34960 1.42723 1.06094 0.82705 0.72791 0.76313 0.72769 1.19198 1.19338 1.20044 1.22957 0.90358 0.97370 0.97082 0.89821 0.92485 0.90849 0.88896 0.91116 0.73779 0.85309 0.89634 0.89063 0.92075 0.93813 0.90134 0.91409 0.91462 0.91796 0.91782 0.92554 0.92529 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 10.05 71.98 0.72 0.04 16 2 C 0.09 0.60 5.61 86.38 0.48 1.09 16 3 N -1.11 -10.07 5.89 -187.48 -1.10 -11.17 16 4 S 2.63 41.32 5.14 -56.49 -0.29 41.03 16 5 O -0.99 -22.88 17.13 -127.65 -2.19 -25.07 16 6 O -0.99 -22.19 18.08 -127.65 -2.31 -24.50 16 7 C -0.59 -7.19 3.78 31.98 0.12 -7.07 16 8 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 9 C -0.12 -1.29 4.66 31.77 0.15 -1.14 16 10 C 0.04 0.61 6.20 86.65 0.54 1.14 16 11 N -0.53 -11.16 5.16 -885.54 -4.57 -15.73 16 12 C 0.06 1.42 4.54 86.30 0.39 1.82 16 13 C -0.08 -2.47 5.25 30.60 0.16 -2.31 16 14 C -0.07 -2.77 5.67 71.98 0.41 -2.36 16 15 S -0.24 -12.73 20.46 -56.49 -1.16 -13.88 16 16 C -0.61 -35.56 9.50 67.95 0.65 -34.92 16 17 H 0.06 3.66 7.80 -2.91 -0.02 3.64 16 18 C -0.02 -1.08 5.49 84.86 0.47 -0.62 16 19 N -0.91 -57.12 13.67 21.65 0.30 -56.82 16 20 Si 1.14 50.07 29.92 68.60 2.05 52.12 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.05 0.91 6.17 86.77 0.53 1.45 16 25 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.09 0.20 5.28 -2.39 -0.01 0.19 16 29 H 0.07 0.63 7.69 -2.39 -0.02 0.62 16 30 H 0.43 2.60 8.62 -96.74 -0.83 1.76 16 31 H 0.13 0.51 6.31 -2.39 -0.02 0.50 16 32 H 0.09 0.93 7.47 -2.39 -0.02 0.91 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.14 6.91 -2.39 -0.02 1.12 16 35 H 0.04 1.06 7.96 -2.39 -0.02 1.04 16 36 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.08 7.14 -2.38 -0.02 2.06 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 41 H 0.26 16.90 7.12 -92.71 -0.66 16.24 16 42 H 0.06 1.05 7.56 -2.39 -0.02 1.03 16 43 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -80.78 364.91 -4.37 -85.14 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.28 Total: 11.76 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 4.62 Total: -42.88 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -5.38 Total: -83.73 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -4.49 Total: -49.57 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Atomic # 16 Polarization: 28.59 SS G_CDS: -1.45 Total: 27.15 kcal Total: -80.78 -4.37 -85.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092843978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.487 kcal (2) G-P(sol) polarization free energy of solvation -80.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds