Wall clock time and date at job start Fri Apr 10 2020 14:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46910 * 110.99813 * 2 1 4 4 C 1.53001 * 109.46762 * 66.04601 * 3 2 1 5 5 C 1.53006 * 109.46794 * 180.02562 * 4 3 2 6 6 S 1.80998 * 109.46890 * 179.97438 * 5 4 3 7 7 C 1.76204 * 99.99645 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.38802 * 119.99720 * 179.97438 * 7 6 5 10 10 N 1.31632 * 120.00093 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00020 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 90.00077 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00257 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00251 * 11 9 7 15 15 C 1.46900 * 111.00086 * 236.04906 * 2 1 3 16 16 H 1.09002 * 110.88757 * 61.52711 * 15 2 1 17 17 C 1.55154 * 111.00242 * 185.40215 * 15 2 1 18 18 C 1.54324 * 102.94173 * 153.57372 * 17 15 2 19 19 N 1.47023 * 107.27188 * 337.81401 * 18 17 15 20 20 S 1.65601 * 125.65249 * 178.98702 * 19 18 17 21 21 C 1.81403 * 104.45073 * 89.96781 * 20 19 18 22 22 O 1.42094 * 104.27878 * 206.04308 * 20 19 18 23 23 O 1.42104 * 104.27510 * 333.89952 * 20 19 18 24 24 C 1.47431 * 108.70103 * 358.93339 * 19 18 17 25 25 H 1.09001 * 109.47601 * 60.00331 * 1 2 3 26 26 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47668 * 299.99715 * 1 2 3 28 28 H 1.09001 * 109.46543 * 306.05129 * 3 2 1 29 29 H 1.08994 * 109.46958 * 186.04850 * 3 2 1 30 30 H 1.08991 * 109.47033 * 60.00365 * 4 3 2 31 31 H 1.09004 * 109.47086 * 299.99717 * 4 3 2 32 32 H 1.09004 * 109.47207 * 60.00074 * 5 4 3 33 33 H 1.08994 * 109.46877 * 300.00218 * 5 4 3 34 34 H 0.96993 * 120.00092 * 359.97438 * 10 9 7 35 35 H 1.09000 * 110.72258 * 271.93404 * 17 15 2 36 36 H 1.08995 * 110.72199 * 35.21388 * 17 15 2 37 37 H 1.09007 * 109.88358 * 97.22144 * 18 17 15 38 38 H 1.08993 * 109.88723 * 218.23430 * 18 17 15 39 39 H 1.08998 * 109.47280 * 60.00309 * 21 20 19 40 40 H 1.08995 * 109.47043 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.47139 * 300.00554 * 21 20 19 42 42 H 1.08998 * 110.36498 * 265.29310 * 24 19 18 43 43 H 1.09000 * 110.36060 * 142.97349 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1790 3.4861 1.3180 6 16 1.7477 4.2978 2.8772 7 6 2.4805 5.8782 2.6123 8 1 2.9996 6.0846 1.6880 9 6 2.3897 6.8581 3.5911 10 7 1.7565 6.6067 4.7174 11 14 3.1659 8.5338 3.3100 12 1 2.1772 9.4357 2.6663 13 1 4.3513 8.3885 2.4274 14 1 3.5864 9.1094 4.6127 15 6 1.9954 -0.7659 -1.1376 16 1 1.6814 -0.3231 -2.0829 17 6 3.5409 -0.8803 -1.0634 18 6 3.8283 -2.1853 -1.8354 19 7 2.5945 -2.9846 -1.8163 20 16 2.3909 -4.4629 -2.5343 21 6 2.8707 -5.6570 -1.2558 22 8 0.9951 -4.5394 -2.7894 23 8 3.3316 -4.4678 -3.5993 24 6 1.5688 -2.2525 -1.0510 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.5609 1.9274 -0.8309 29 1 3.0796 1.3445 -0.1083 30 1 2.0657 1.5016 2.1491 31 1 0.5470 2.0845 1.4265 32 1 1.7443 4.0418 0.4871 33 1 3.2632 3.4595 1.2095 34 1 1.3532 5.7368 4.8632 35 1 4.0146 -0.0299 -1.5538 36 1 3.8722 -0.9637 -0.0284 37 1 4.1043 -1.9542 -2.8644 38 1 4.6355 -2.7334 -1.3496 39 1 2.2266 -5.5355 -0.3849 40 1 2.7667 -6.6692 -1.6466 41 1 3.9077 -5.4838 -0.9677 42 1 1.5608 -2.5851 -0.0130 43 1 0.5868 -2.3924 -1.5027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336788092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:47 Heat of formation + Delta-G solvation = -101.391604 kcal Electronic energy + Delta-G solvation = -22816.175728 eV Core-core repulsion = 19341.341104 eV Total energy + Delta-G solvation = -3474.834625 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26120 -38.23560 -37.59344 -37.05899 -34.77998 -34.10490 -31.39426 -30.28475 -29.53107 -28.03527 -27.15693 -25.29056 -23.09088 -22.25462 -21.14505 -20.25178 -19.94513 -18.78657 -17.86073 -17.21274 -16.89153 -16.69136 -16.29700 -15.84296 -15.80245 -15.48488 -15.15390 -14.74496 -14.49478 -14.39143 -14.26507 -14.06007 -13.94481 -13.92609 -13.44575 -13.29113 -13.19950 -13.03657 -12.88371 -12.77887 -12.71743 -12.47238 -12.15237 -12.01350 -11.96093 -11.87456 -11.78193 -11.55722 -11.17614 -11.09441 -10.39002 -9.96669 -9.37630 -8.92884 -8.84674 -6.26647 -0.77213 1.42642 1.56916 1.58983 1.62230 1.78883 2.33581 2.78691 2.91517 3.01065 3.08318 3.15234 3.44909 3.70960 3.92330 4.03327 4.09599 4.14517 4.16579 4.23676 4.34033 4.38133 4.46039 4.52685 4.57495 4.62307 4.69602 4.80086 4.83089 4.89353 4.92435 4.99469 5.03792 5.14244 5.14892 5.22312 5.30435 5.36026 5.64157 5.99550 6.10554 6.17534 7.05472 8.51823 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.038640 B = 0.001976 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.455794 B =14165.729814 C =14466.206915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.532 5.532 3 C 0.070 3.930 4 C -0.082 4.082 5 C -0.067 4.067 6 S -0.244 6.244 7 C -0.604 4.604 8 H 0.064 0.936 9 C -0.019 4.019 10 N -0.912 5.912 11 Si 1.136 2.864 12 H -0.268 1.268 13 H -0.267 1.267 14 H -0.276 1.276 15 C 0.068 3.932 16 H 0.051 0.949 17 C -0.120 4.120 18 C 0.119 3.881 19 N -1.017 6.017 20 S 2.632 3.368 21 C -0.649 4.649 22 O -0.995 6.995 23 O -0.992 6.992 24 C 0.126 3.874 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.092 0.908 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -24.901 -13.506 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.256 5.256 3 C -0.059 4.059 4 C -0.121 4.121 5 C -0.216 4.216 6 S -0.016 6.016 7 C -0.752 4.752 8 H 0.083 0.917 9 C -0.223 4.223 10 N -0.548 5.548 11 Si 0.954 3.046 12 H -0.194 1.194 13 H -0.192 1.192 14 H -0.201 1.201 15 C -0.042 4.042 16 H 0.069 0.931 17 C -0.159 4.159 18 C -0.006 4.006 19 N -0.855 5.855 20 S 2.730 3.270 21 C -0.803 4.803 22 O -0.985 6.985 23 O -0.983 6.983 24 C 0.000 4.000 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.110 0.890 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.062 -24.298 -12.431 27.465 hybrid contribution 0.100 -0.525 -1.768 1.847 sum 3.162 -24.823 -14.199 28.772 Atomic orbital electron populations 1.22539 0.86799 1.02980 1.00993 1.61995 1.08446 1.13290 1.41857 1.22012 1.00966 0.87544 0.95422 1.21182 1.00873 0.91374 0.98649 1.23032 1.02691 0.98759 0.97156 1.84213 1.75770 1.15273 1.26316 1.23919 1.43637 0.99144 1.08460 0.91731 1.27763 0.95378 1.07735 0.91401 1.70885 1.33157 1.25108 1.25626 0.82708 0.76025 0.69248 0.76613 1.19380 1.19177 1.20115 1.22813 0.96159 0.93347 0.91879 0.93141 1.22722 0.93812 0.97135 1.02202 1.21807 0.85924 0.91888 1.00976 1.58420 1.21029 1.34985 1.71083 1.04041 0.72919 0.74234 0.75767 1.30350 1.14426 1.16869 1.18642 1.93555 1.33567 1.86410 1.85017 1.93559 1.65179 1.86421 1.53140 1.22014 0.90774 0.90268 0.96932 0.95580 0.89704 0.91336 0.94805 0.89444 0.91167 0.91898 0.92120 0.91504 0.92555 0.89662 0.88945 0.91531 0.89007 0.83551 0.83628 0.83316 0.88964 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.16 127.69 1.17 1.44 16 2 N -0.53 -10.29 4.66 -888.90 -4.14 -14.43 16 3 C 0.07 1.59 4.84 86.30 0.42 2.00 16 4 C -0.08 -2.44 5.14 30.60 0.16 -2.28 16 5 C -0.07 -2.58 5.67 71.98 0.41 -2.17 16 6 S -0.24 -12.71 20.46 -56.49 -1.16 -13.86 16 7 C -0.60 -35.01 9.50 67.95 0.65 -34.37 16 8 H 0.06 3.64 7.80 -2.91 -0.02 3.61 16 9 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 10 N -0.91 -56.86 13.67 21.65 0.30 -56.56 16 11 Si 1.14 49.55 29.92 68.60 2.05 51.61 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.07 1.11 2.71 46.30 0.13 1.24 16 16 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 17 C -0.12 -1.58 5.31 31.78 0.17 -1.42 16 18 C 0.12 1.42 6.90 86.73 0.60 2.02 16 19 N -1.02 -13.59 3.62 -506.42 -1.83 -15.43 16 20 S 2.63 36.46 6.29 -56.49 -0.36 36.11 16 21 C -0.65 -2.69 10.99 113.37 1.25 -1.45 16 22 O -0.99 -21.38 17.28 -127.65 -2.21 -23.58 16 23 O -0.99 -20.80 17.60 -127.65 -2.25 -23.05 16 24 C 0.13 1.80 5.53 86.85 0.48 2.28 16 25 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.08 1.27 6.97 -2.39 -0.02 1.26 16 27 H 0.07 1.41 6.47 -2.39 -0.02 1.39 16 28 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 29 H 0.09 1.82 6.73 -2.39 -0.02 1.80 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.93 6.55 -2.38 -0.02 1.91 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 34 H 0.26 16.81 7.12 -92.71 -0.66 16.15 16 35 H 0.08 1.07 7.88 -2.39 -0.02 1.05 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.19 7.45 -2.39 -0.02 1.17 16 Total: -1.00 -79.47 368.86 -2.63 -82.10 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.08 Total: 10.46 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 5.88 Total: -33.35 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -5.68 Total: -86.42 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -4.45 Total: -46.63 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.61 kcal Atomic # 16 Polarization: 23.76 SS G_CDS: -1.51 Total: 22.25 kcal Total: -79.47 -2.63 -82.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336788092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.293 kcal (2) G-P(sol) polarization free energy of solvation -79.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds