Wall clock time and date at job start Fri Apr 10 2020 14:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46891 * 110.99994 * 2 1 4 4 C 1.46897 * 110.99524 * 123.95687 * 2 1 3 5 5 C 1.52997 * 108.85236 * 299.31757 * 4 2 1 6 6 N 1.46501 * 109.47166 * 173.93025 * 5 4 2 7 7 S 1.65599 * 119.99979 * 163.34979 * 6 5 4 8 8 O 1.42096 * 104.27953 * 308.93068 * 7 6 5 9 9 O 1.42099 * 104.27894 * 181.06909 * 7 6 5 10 10 C 1.81404 * 104.44573 * 65.00326 * 7 6 5 11 11 C 1.53003 * 109.46865 * 180.02562 * 10 7 6 12 12 C 1.50701 * 109.46921 * 180.02562 * 11 10 7 13 13 H 1.07999 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99833 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00408 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99884 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47469 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47162 * 119.99992 * 16 14 12 19 19 H 1.48502 * 109.47446 * 239.99924 * 16 14 12 20 20 C 1.52944 * 108.77196 * 180.80204 * 4 2 1 21 21 C 1.55155 * 108.96452 * 209.18163 * 20 4 2 22 22 S 1.83988 * 100.90653 * 41.44004 * 21 20 4 23 23 C 1.53709 * 108.89050 * 57.89729 * 4 2 1 24 24 H 1.08994 * 109.47160 * 295.56049 * 1 2 3 25 25 H 1.09010 * 109.47207 * 55.56044 * 1 2 3 26 26 H 1.09002 * 109.47628 * 175.55977 * 1 2 3 27 27 H 1.09004 * 109.46914 * 183.95090 * 3 2 1 28 28 H 1.08998 * 109.47769 * 303.95736 * 3 2 1 29 29 H 1.09005 * 109.47136 * 63.95848 * 3 2 1 30 30 H 1.08991 * 109.47158 * 53.92876 * 5 4 2 31 31 H 1.09001 * 109.46874 * 293.92492 * 5 4 2 32 32 H 0.97004 * 120.00032 * 343.35724 * 6 5 4 33 33 H 1.08996 * 109.47451 * 59.99530 * 10 7 6 34 34 H 1.08997 * 109.46967 * 299.99521 * 10 7 6 35 35 H 1.08997 * 109.46774 * 299.99440 * 11 10 7 36 36 H 1.08994 * 109.47635 * 59.99985 * 11 10 7 37 37 H 0.97003 * 120.00298 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.60400 * 329.11813 * 20 4 2 39 39 H 1.09006 * 109.59769 * 89.25470 * 20 4 2 40 40 H 1.09004 * 111.12824 * 283.53202 * 21 20 4 41 41 H 1.08994 * 111.16852 * 159.36682 * 21 20 4 42 42 H 1.09001 * 110.33755 * 242.34940 * 23 4 2 43 43 H 1.09000 * 110.34026 * 4.49667 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.5106 -0.1186 2.4363 6 7 1.9055 -0.9520 3.5745 7 16 1.8898 -0.3230 5.1063 8 8 2.6284 0.8860 4.9962 9 8 2.3470 -1.3887 5.9275 10 6 0.1403 0.0274 5.4337 11 6 -0.0072 0.6206 6.8363 12 6 -1.4607 0.9110 7.1085 13 1 -2.2047 0.6946 6.3562 14 6 -1.8405 1.4530 8.3180 15 7 -0.9346 1.7161 9.2343 16 14 -3.6421 1.8137 8.6552 17 1 -4.4538 1.4293 7.4726 18 1 -4.0902 1.0342 9.8371 19 1 -3.8147 3.2639 8.9244 20 6 3.5235 -0.7161 1.0997 21 6 4.0864 -2.0108 1.7432 22 16 2.9416 -3.2718 1.0470 23 6 1.4521 -2.2021 1.0645 24 1 -0.3633 0.4434 0.9270 25 1 -0.3634 0.5812 -0.8476 26 1 -0.3634 -1.0246 -0.0796 27 1 3.0828 1.3431 -0.0708 28 1 1.5898 1.9163 -0.8523 29 1 1.7044 1.8723 0.9234 30 1 0.4248 -0.0263 2.4130 31 1 1.9573 0.8705 2.5379 32 1 2.1764 -1.8724 3.4309 33 1 -0.4340 -0.8967 5.3673 34 1 -0.2315 0.7399 4.6974 35 1 0.3647 -0.0916 7.5729 36 1 0.5669 1.5447 6.9022 37 1 -1.2019 2.0978 10.0851 38 1 3.8616 -0.6447 0.0659 39 1 3.8749 0.1521 1.6574 40 1 4.0147 -1.9726 2.8302 41 1 5.1128 -2.1940 1.4258 42 1 0.8392 -2.4202 1.9391 43 1 0.8725 -2.3419 0.1520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360444853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:41 Heat of formation + Delta-G solvation = -61.054515 kcal Electronic energy + Delta-G solvation = -24453.098604 eV Core-core repulsion = 20980.013127 eV Total energy + Delta-G solvation = -3473.085477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18362 -36.67325 -35.56314 -35.13175 -33.95936 -33.13907 -31.22782 -30.13202 -28.07701 -26.49410 -25.66522 -24.68757 -23.16745 -21.75283 -19.43103 -19.05806 -17.68676 -17.23460 -16.86868 -16.35474 -15.95045 -15.70000 -15.27781 -15.05648 -14.79206 -14.59052 -14.06658 -13.90218 -13.82788 -13.42446 -13.01486 -12.71616 -12.59341 -12.36540 -12.32512 -11.96413 -11.87487 -11.82372 -11.69377 -11.63651 -11.60825 -11.46700 -11.26774 -11.14128 -11.02231 -10.47304 -10.45502 -10.18125 -9.87061 -9.58186 -9.13893 -8.66881 -8.55737 -7.91148 -6.17523 -4.23457 0.68188 1.58440 2.04298 2.97366 3.21543 3.29019 3.31981 3.46271 4.03200 4.16904 4.28396 4.33059 4.38441 4.61218 4.67224 4.80660 4.86533 4.94237 5.01646 5.09871 5.17841 5.21723 5.24544 5.27415 5.43182 5.45931 5.49201 5.56473 5.56976 5.63075 5.65377 5.72434 5.76292 6.39815 6.57408 6.58417 6.89965 7.23425 7.29290 7.75231 8.11495 8.80034 9.41742 10.93524 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003587 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.510440 B = 7804.325181 C = 8432.172543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.525 5.525 3 C 0.010 3.990 4 C 0.106 3.894 5 C 0.083 3.917 6 N -1.126 6.126 7 S 2.589 3.411 8 O -0.965 6.965 9 O -0.963 6.963 10 C -0.588 4.588 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.116 4.116 21 C -0.073 4.073 22 S -0.284 6.284 23 C -0.068 4.068 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.412 0.588 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -4.415 -20.589 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.248 5.248 3 C -0.138 4.138 4 C 0.013 3.987 5 C -0.046 4.046 6 N -0.886 5.886 7 S 2.687 3.313 8 O -0.955 6.955 9 O -0.953 6.953 10 C -0.722 4.722 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.155 4.155 21 C -0.221 4.221 22 S -0.058 6.058 23 C -0.217 4.217 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.248 0.752 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.873 -5.414 -20.668 22.443 hybrid contribution -2.062 1.405 1.097 2.726 sum 4.810 -4.009 -19.571 20.548 Atomic orbital electron populations 1.22639 0.86984 1.02934 1.01547 1.62448 1.08330 1.14249 1.39789 1.22585 1.01445 0.88324 1.01437 1.21785 0.95188 0.93038 0.88685 1.22189 1.00391 0.95492 0.86500 1.55956 1.84900 1.23973 1.23724 1.05698 0.79238 0.74194 0.72218 1.93537 1.69264 1.47764 1.84955 1.93568 1.80498 1.55308 1.65961 1.30436 1.20548 1.10479 1.10713 1.18972 1.00070 0.96532 0.85554 1.21020 0.91488 1.42779 1.00748 0.92018 1.25065 0.98056 0.95295 0.96026 1.69959 1.33311 1.43028 1.06454 0.86416 0.84404 0.78099 0.78375 1.19659 1.20735 1.20763 1.22475 0.92101 0.97955 1.02939 1.24460 1.00894 0.93693 1.03077 1.87885 1.08570 1.24481 1.84912 1.24192 0.97687 0.93009 1.06798 0.94294 0.90720 0.90766 0.90688 0.90829 0.94450 0.90971 0.89340 0.75212 0.86013 0.86502 0.94775 0.94840 0.92526 0.88819 0.89366 0.88740 0.87134 0.88361 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 8.84 60.06 0.53 0.58 16 2 N -0.52 -4.22 4.70 -235.01 -1.11 -5.32 16 3 C 0.01 0.07 8.87 60.06 0.53 0.61 16 4 C 0.11 0.94 0.48 -131.26 -0.06 0.88 16 5 C 0.08 0.87 3.98 -4.04 -0.02 0.85 16 6 N -1.13 -13.93 4.71 -10.62 -0.05 -13.98 16 7 S 2.59 44.49 5.46 -107.50 -0.59 43.91 16 8 O -0.97 -19.04 17.48 -57.54 -1.01 -20.04 16 9 O -0.96 -19.56 18.08 -57.54 -1.04 -20.60 16 10 C -0.59 -10.85 6.01 37.16 0.22 -10.63 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 16 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.12 -1.01 3.84 -25.62 -0.10 -1.11 16 21 C -0.07 -0.68 6.78 38.30 0.26 -0.42 16 22 S -0.28 -2.98 22.96 -107.50 -2.47 -5.44 16 23 C -0.07 -0.62 5.22 37.53 0.20 -0.42 16 24 H 0.04 0.29 6.11 -51.93 -0.32 -0.03 16 25 H 0.07 0.46 8.11 -51.92 -0.42 0.04 16 26 H 0.07 0.49 6.23 -51.93 -0.32 0.16 16 27 H 0.07 0.51 6.61 -51.93 -0.34 0.17 16 28 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.04 0.29 6.47 -51.93 -0.34 -0.04 16 30 H 0.07 0.67 6.04 -51.93 -0.31 0.36 16 31 H 0.09 0.97 6.02 -51.93 -0.31 0.66 16 32 H 0.41 4.74 5.37 -34.47 -0.19 4.56 16 33 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 34 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 39 H 0.09 0.78 7.52 -51.93 -0.39 0.39 16 40 H 0.09 0.96 6.54 -51.93 -0.34 0.62 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.88 6.86 -51.93 -0.36 0.52 16 43 H 0.11 0.96 6.35 -51.93 -0.33 0.63 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -33.94 351.86 -10.66 -44.61 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.44 Total: 3.16 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 1.02 Total: -22.05 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.42 Total: -44.73 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -2.05 Total: -40.64 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 41.52 SS G_CDS: -3.06 Total: 38.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.94 -10.66 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360444853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.446 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds