Wall clock time and date at job start Fri Apr 10 2020 14:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86806 * 119.99488 * 2 1 4 4 H 1.48504 * 109.46595 * 90.00591 * 3 2 1 5 5 H 1.48497 * 109.46910 * 210.00147 * 3 2 1 6 6 H 1.48492 * 109.47289 * 330.00904 * 3 2 1 7 7 C 1.40042 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.46380 * 120.00105 * 359.97438 * 7 2 1 10 10 O 1.21682 * 119.99560 * 353.62947 * 9 7 2 11 11 N 1.34779 * 119.99817 * 173.62776 * 9 7 2 12 12 C 1.47073 * 120.88318 * 4.78935 * 11 9 7 13 13 C 1.53690 * 108.27631 * 128.75456 * 12 11 9 14 14 N 1.46899 * 109.26105 * 54.08248 * 13 12 11 15 15 C 1.38397 * 111.00381 * 172.60979 * 14 13 12 16 16 N 1.32490 * 119.17810 * 124.02926 * 15 14 13 17 17 C 1.32491 * 120.92997 * 179.75971 * 16 15 14 18 18 C 1.38129 * 119.28868 * 0.50591 * 17 16 15 19 19 N 1.48020 * 120.75427 * 179.73064 * 18 17 16 20 20 O 1.21800 * 119.99895 * 6.06816 * 19 18 17 21 21 O 1.21802 * 120.00085 * 186.06446 * 19 18 17 22 22 C 1.39641 * 118.49114 * 359.75040 * 18 17 16 23 23 N 1.38534 * 120.48422 * 179.97438 * 22 18 17 24 24 N 1.32441 * 119.17228 * 304.30000 * 15 14 13 25 25 C 1.46902 * 111.26694 * 296.75649 * 14 13 12 26 26 C 1.47080 * 120.87433 * 185.06381 * 11 9 7 27 27 H 0.97002 * 120.00771 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.62591 * 248.52138 * 12 11 9 29 29 H 1.09003 * 109.63180 * 9.10268 * 12 11 9 30 30 H 1.09001 * 109.64874 * 294.07323 * 13 12 11 31 31 H 1.09004 * 109.41992 * 173.94773 * 13 12 11 32 32 H 1.07999 * 120.35809 * 180.23531 * 17 16 15 33 33 H 0.97003 * 119.99518 * 200.35509 * 23 22 18 34 34 H 0.96992 * 120.00184 * 20.36117 * 23 22 18 35 35 H 1.09008 * 109.49356 * 303.14633 * 25 14 13 36 36 H 1.08993 * 109.51929 * 183.07557 * 25 14 13 37 37 H 1.09000 * 109.63258 * 350.89730 * 26 11 9 38 38 H 1.09001 * 109.62565 * 111.48019 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4881 2.0464 1.4002 5 1 3.5381 1.4404 -0.7001 6 1 1.4379 2.6528 -0.6998 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0641 -2.4838 0.1169 11 7 1.9430 -3.6440 -0.1306 12 6 3.4129 -3.6706 -0.1688 13 6 3.9034 -4.6992 0.8625 14 7 3.2525 -5.9909 0.6058 15 6 3.7887 -6.9843 1.4065 16 7 2.9842 -7.6855 2.1916 17 6 3.4596 -8.6476 2.9686 18 6 4.8153 -8.9120 2.9640 19 7 5.3821 -9.9754 3.8236 20 8 4.6415 -10.7017 4.4620 21 8 6.5890 -10.1241 3.8926 22 6 5.6391 -8.1531 2.1301 23 7 7.0048 -8.3830 2.0931 24 7 5.0939 -7.2065 1.3727 25 6 1.7973 -5.8991 0.7843 26 6 1.2206 -4.9202 -0.2441 27 1 -0.4851 0.8400 0.0004 28 1 3.7481 -3.9582 -1.1653 29 1 3.8037 -2.6843 0.0815 30 1 3.6528 -4.3589 1.8672 31 1 4.9840 -4.8127 0.7754 32 1 2.7949 -9.2160 3.6022 33 1 7.6035 -7.6955 1.7616 34 1 7.3622 -9.2313 2.3986 35 1 1.5760 -5.5420 1.7901 36 1 1.3500 -6.8826 0.6408 37 1 0.1612 -4.7604 -0.0436 38 1 1.3492 -5.3256 -1.2477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568249158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:11 Heat of formation + Delta-G solvation = 51.213986 kcal Electronic energy + Delta-G solvation = -26884.798793 eV Core-core repulsion = 22767.137229 eV Total energy + Delta-G solvation = -4117.661564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.64005 -41.51439 -39.12354 -37.27128 -36.86253 -35.78878 -34.10559 -32.87714 -32.61087 -31.34505 -30.85815 -27.89913 -26.39995 -25.58974 -24.70719 -23.26099 -23.04049 -21.21456 -19.64983 -19.48085 -19.21139 -18.39277 -18.33018 -17.82091 -16.84998 -16.44494 -16.17264 -15.68171 -15.49553 -14.74490 -14.62216 -14.43355 -14.38518 -14.11246 -13.69092 -12.81802 -12.66864 -12.44741 -12.07541 -11.84596 -11.69448 -11.49741 -11.45941 -11.29650 -11.18466 -11.12787 -11.00111 -10.95142 -10.86268 -10.33875 -10.19683 -9.87006 -9.39525 -8.98562 -8.91696 -7.73578 -7.43854 -6.31623 -4.77605 -0.45309 0.65608 0.96054 1.10255 2.40399 2.90046 3.06287 3.13498 3.13977 3.16409 3.58461 3.83323 3.97298 4.05683 4.35888 4.43887 4.58674 4.91740 5.14433 5.23717 5.32657 5.43365 5.54657 5.70564 5.80973 5.88953 5.94586 6.05261 6.21780 6.30954 6.43015 6.45000 6.48718 6.69213 7.02736 7.33140 7.38562 7.39090 7.62129 7.96312 8.18735 8.90251 9.25799 10.43724 10.62359 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.002727 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.928119 B =10263.994839 C =10789.832988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.574 6.574 11 N -0.648 5.648 12 C 0.128 3.872 13 C 0.051 3.949 14 N -0.447 5.447 15 C 0.577 3.423 16 N -0.569 5.569 17 C 0.285 3.715 18 C -0.258 4.258 19 N 0.066 4.934 20 O -0.161 6.161 21 O -0.198 6.198 22 C 0.525 3.475 23 N -0.809 5.809 24 N -0.579 5.579 25 C 0.054 3.946 26 C 0.121 3.879 27 H 0.270 0.730 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.194 0.806 33 H 0.415 0.585 34 H 0.427 0.573 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.341 -14.757 3.768 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.456 6.456 11 N -0.387 5.387 12 C 0.003 3.997 13 C -0.075 4.075 14 N -0.163 5.163 15 C 0.221 3.779 16 N -0.293 5.293 17 C 0.114 3.886 18 C -0.358 4.358 19 N 0.576 4.424 20 O -0.377 6.377 21 O -0.400 6.400 22 C 0.271 3.729 23 N -0.360 5.360 24 N -0.310 5.310 25 C -0.073 4.073 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.211 0.789 33 H 0.247 0.753 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.971 -13.450 2.304 17.510 hybrid contribution 1.357 -0.207 1.201 1.824 sum 12.328 -13.658 3.505 18.730 Atomic orbital electron populations 1.69994 1.07102 1.27538 1.34815 1.25723 0.94634 1.00364 0.92508 0.86376 0.80187 0.81365 0.78906 1.19698 1.18805 1.20375 1.20938 0.93526 0.89162 1.54526 0.90906 1.18279 0.86925 0.82045 0.76152 1.90603 1.14492 1.85812 1.54715 1.48381 1.04541 1.06143 1.79613 1.21656 0.82974 0.98439 0.96680 1.22973 0.99434 0.84640 1.00421 1.58231 1.08346 1.05752 1.44015 1.21312 0.84185 0.90267 0.82091 1.68945 1.38283 1.11213 1.10871 1.22964 0.89811 0.87084 0.88790 1.22205 0.97441 1.05802 1.10327 1.42980 1.00450 0.99969 0.98985 1.94550 1.58106 1.41869 1.43139 1.94305 0.97790 1.76882 1.70975 1.17863 0.86523 0.84955 0.83562 1.42987 1.02115 1.22359 1.68544 1.67934 1.13348 1.23758 1.26008 1.22728 0.81943 1.01764 1.00871 1.21338 0.98579 0.84032 0.96413 0.91919 0.92381 0.87548 0.92494 0.88399 0.78947 0.75328 0.73278 0.91837 0.88789 0.88328 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.06 11.85 55.55 0.66 -21.40 16 2 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 3 Si 0.91 19.12 29.56 -169.99 -5.02 14.09 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -14.37 8.86 -35.63 -0.32 -14.68 16 8 H 0.07 1.72 5.73 -52.49 -0.30 1.42 16 9 C 0.56 14.99 7.62 -12.98 -0.10 14.89 16 10 O -0.57 -17.68 14.50 5.20 0.08 -17.61 16 11 N -0.65 -13.62 3.00 -173.84 -0.52 -14.14 16 12 C 0.13 2.14 6.50 -3.37 -0.02 2.12 16 13 C 0.05 0.73 5.51 -3.47 -0.02 0.71 16 14 N -0.45 -6.43 4.69 -174.83 -0.82 -7.25 16 15 C 0.58 7.76 7.18 -322.89 -2.32 5.45 16 16 N -0.57 -7.12 8.66 -14.02 -0.12 -7.24 16 17 C 0.29 2.97 10.81 -17.31 -0.19 2.78 16 18 C -0.26 -2.82 6.90 -79.46 -0.55 -3.37 16 19 N 0.07 0.76 4.45 34.20 0.15 0.91 16 20 O -0.16 -1.92 18.55 -29.46 -0.55 -2.47 16 21 O -0.20 -2.21 16.00 -29.46 -0.47 -2.69 16 22 C 0.52 5.66 7.81 -154.83 -1.21 4.45 16 23 N -0.81 -6.23 8.66 31.23 0.27 -5.95 16 24 N -0.58 -7.17 9.66 -13.17 -0.13 -7.29 16 25 C 0.05 0.81 4.79 -3.70 -0.02 0.80 16 26 C 0.12 2.19 6.61 -3.60 -0.02 2.16 16 27 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.83 5.45 -51.93 -0.28 1.55 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.22 7.51 -51.93 -0.39 0.83 16 32 H 0.19 1.45 7.70 -52.49 -0.40 1.05 16 33 H 0.42 2.37 8.95 -40.82 -0.37 2.00 16 34 H 0.43 3.03 6.00 -40.82 -0.25 2.78 16 35 H 0.06 1.03 8.13 -51.92 -0.42 0.61 16 36 H 0.09 1.27 7.63 -51.93 -0.40 0.88 16 37 H 0.10 1.97 7.04 -51.93 -0.37 1.61 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -33.29 325.85 -9.99 -43.28 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.57 Total: 5.30 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: -4.85 Total: 17.55 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.51 Total: -62.37 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.94 Total: -22.76 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.29 -9.99 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568249158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.494 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds