Wall clock time and date at job start Fri Apr 10 2020 14:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86806 * 119.99488 * 2 1 4 4 H 1.48504 * 109.46595 * 90.00591 * 3 2 1 5 5 H 1.48497 * 109.46910 * 210.00147 * 3 2 1 6 6 H 1.48492 * 109.47289 * 330.00904 * 3 2 1 7 7 C 1.40042 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.46380 * 120.00105 * 359.97438 * 7 2 1 10 10 O 1.21682 * 119.99560 * 353.62947 * 9 7 2 11 11 N 1.34779 * 119.99817 * 173.62776 * 9 7 2 12 12 C 1.47073 * 120.88318 * 4.78935 * 11 9 7 13 13 C 1.53690 * 108.27631 * 128.75456 * 12 11 9 14 14 N 1.46899 * 109.26105 * 54.08248 * 13 12 11 15 15 C 1.38397 * 111.00381 * 172.60979 * 14 13 12 16 16 N 1.32490 * 119.17810 * 124.02926 * 15 14 13 17 17 C 1.32491 * 120.92997 * 179.75971 * 16 15 14 18 18 C 1.38129 * 119.28868 * 0.50591 * 17 16 15 19 19 N 1.48020 * 120.75427 * 179.73064 * 18 17 16 20 20 O 1.21800 * 119.99895 * 6.06816 * 19 18 17 21 21 O 1.21802 * 120.00085 * 186.06446 * 19 18 17 22 22 C 1.39641 * 118.49114 * 359.75040 * 18 17 16 23 23 N 1.38534 * 120.48422 * 179.97438 * 22 18 17 24 24 N 1.32441 * 119.17228 * 304.30000 * 15 14 13 25 25 C 1.46902 * 111.26694 * 296.75649 * 14 13 12 26 26 C 1.47080 * 120.87433 * 185.06381 * 11 9 7 27 27 H 0.97002 * 120.00771 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.62591 * 248.52138 * 12 11 9 29 29 H 1.09003 * 109.63180 * 9.10268 * 12 11 9 30 30 H 1.09001 * 109.64874 * 294.07323 * 13 12 11 31 31 H 1.09004 * 109.41992 * 173.94773 * 13 12 11 32 32 H 1.07999 * 120.35809 * 180.23531 * 17 16 15 33 33 H 0.97003 * 119.99518 * 200.35509 * 23 22 18 34 34 H 0.96992 * 120.00184 * 20.36117 * 23 22 18 35 35 H 1.09008 * 109.49356 * 303.14633 * 25 14 13 36 36 H 1.08993 * 109.51929 * 183.07557 * 25 14 13 37 37 H 1.09000 * 109.63258 * 350.89730 * 26 11 9 38 38 H 1.09001 * 109.62565 * 111.48019 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4881 2.0464 1.4002 5 1 3.5381 1.4404 -0.7001 6 1 1.4379 2.6528 -0.6998 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0641 -2.4838 0.1169 11 7 1.9430 -3.6440 -0.1306 12 6 3.4129 -3.6706 -0.1688 13 6 3.9034 -4.6992 0.8625 14 7 3.2525 -5.9909 0.6058 15 6 3.7887 -6.9843 1.4065 16 7 2.9842 -7.6855 2.1916 17 6 3.4596 -8.6476 2.9686 18 6 4.8153 -8.9120 2.9640 19 7 5.3821 -9.9754 3.8236 20 8 4.6415 -10.7017 4.4620 21 8 6.5890 -10.1241 3.8926 22 6 5.6391 -8.1531 2.1301 23 7 7.0048 -8.3830 2.0931 24 7 5.0939 -7.2065 1.3727 25 6 1.7973 -5.8991 0.7843 26 6 1.2206 -4.9202 -0.2441 27 1 -0.4851 0.8400 0.0004 28 1 3.7481 -3.9582 -1.1653 29 1 3.8037 -2.6843 0.0815 30 1 3.6528 -4.3589 1.8672 31 1 4.9840 -4.8127 0.7754 32 1 2.7949 -9.2160 3.6022 33 1 7.6035 -7.6955 1.7616 34 1 7.3622 -9.2313 2.3986 35 1 1.5760 -5.5420 1.7901 36 1 1.3500 -6.8826 0.6408 37 1 0.1612 -4.7604 -0.0436 38 1 1.3492 -5.3256 -1.2477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568249158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:11 Heat of formation + Delta-G solvation = 28.384852 kcal Electronic energy + Delta-G solvation = -26885.788739 eV Core-core repulsion = 22767.137229 eV Total energy + Delta-G solvation = -4118.651510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.53112 -42.46373 -40.48925 -38.69062 -37.95673 -36.76142 -35.49988 -34.63999 -33.94619 -32.41008 -32.06934 -29.35682 -28.03519 -26.74151 -25.72010 -24.38011 -24.20464 -22.71060 -20.94046 -20.42656 -20.31043 -19.51083 -19.21109 -18.73906 -18.40294 -17.75469 -17.27112 -16.93048 -16.70306 -16.21816 -15.92098 -15.85882 -15.77354 -15.24396 -15.02926 -14.45536 -13.76098 -13.63742 -13.41236 -13.26435 -13.14202 -12.83344 -12.74368 -12.73608 -12.38349 -12.35959 -12.32443 -12.13007 -12.07325 -11.98506 -11.94668 -10.93161 -10.80986 -10.21269 -10.00811 -9.80909 -9.17263 -8.29528 -6.84134 -1.35998 -0.19129 0.04250 0.21656 1.41980 1.42397 1.48720 1.57898 1.98972 2.22272 2.24169 2.46090 2.73771 2.76392 2.95691 3.15481 3.55943 3.66417 3.87619 3.89843 4.08075 4.21890 4.28934 4.32799 4.58128 4.66838 4.78976 4.86894 5.04064 5.06250 5.15183 5.24493 5.39184 5.65315 5.71608 5.73061 6.10293 6.30302 6.33674 6.49744 6.73725 6.88360 7.37456 8.44894 8.66544 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.002727 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.928119 B =10263.994839 C =10789.832988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.030 3.970 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.244 1.244 6 H -0.277 1.277 7 C -0.567 4.567 8 H 0.098 0.902 9 C 0.543 3.457 10 O -0.629 6.629 11 N -0.650 5.650 12 C 0.126 3.874 13 C 0.063 3.937 14 N -0.452 5.452 15 C 0.569 3.431 16 N -0.583 5.583 17 C 0.290 3.710 18 C -0.260 4.260 19 N 0.067 4.933 20 O -0.177 6.177 21 O -0.189 6.189 22 C 0.520 3.480 23 N -0.789 5.789 24 N -0.583 5.583 25 C 0.073 3.927 26 C 0.121 3.879 27 H 0.274 0.726 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.219 0.781 33 H 0.427 0.573 34 H 0.432 0.568 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.338 -15.355 3.970 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.167 1.167 6 H -0.202 1.202 7 C -0.603 4.603 8 H 0.116 0.884 9 C 0.350 3.650 10 O -0.516 6.516 11 N -0.388 5.388 12 C 0.003 3.997 13 C -0.062 4.062 14 N -0.169 5.169 15 C 0.213 3.787 16 N -0.308 5.308 17 C 0.120 3.880 18 C -0.359 4.359 19 N 0.576 4.424 20 O -0.388 6.388 21 O -0.394 6.394 22 C 0.265 3.735 23 N -0.340 5.340 24 N -0.315 5.315 25 C -0.054 4.054 26 C -0.003 4.003 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.141 0.859 32 H 0.236 0.764 33 H 0.260 0.740 34 H 0.273 0.727 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.046 -14.146 2.529 20.095 hybrid contribution 0.543 -0.187 1.163 1.297 sum 14.590 -14.333 3.691 20.783 Atomic orbital electron populations 1.70177 1.09581 1.28938 1.36569 1.26965 0.95441 1.04930 0.91220 0.85075 0.79030 0.75292 0.79308 1.18881 1.16692 1.20204 1.21496 0.94926 0.89550 1.54337 0.88428 1.18655 0.86539 0.83991 0.75835 1.90553 1.16795 1.87166 1.57086 1.48207 1.06515 1.05706 1.78325 1.21808 0.80158 0.99317 0.98444 1.22805 1.00590 0.84117 0.98705 1.58169 1.07486 1.05970 1.45241 1.21214 0.84802 0.90147 0.82500 1.68945 1.38458 1.11951 1.11432 1.23363 0.90158 0.86345 0.88126 1.22259 0.97766 1.05659 1.10227 1.43019 1.00449 0.99987 0.98980 1.94561 1.58157 1.42342 1.43755 1.94297 0.97782 1.76658 1.70671 1.17990 0.87469 0.84603 0.83415 1.42998 1.01132 1.22740 1.67175 1.67914 1.12787 1.24381 1.26452 1.22418 0.82929 1.01407 0.98674 1.21392 0.97110 0.83565 0.98228 0.91639 0.90793 0.87987 0.93653 0.85925 0.76440 0.73960 0.72691 0.93397 0.86977 0.91123 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.10 11.85 21.83 0.26 -48.84 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 0.99 39.05 29.56 68.60 2.03 41.08 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.24 -8.71 7.11 99.48 0.71 -8.00 16 6 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.57 -30.22 8.86 24.83 0.22 -30.00 16 8 H 0.10 4.52 5.73 -2.91 -0.02 4.51 16 9 C 0.54 30.13 7.62 86.36 0.66 30.79 16 10 O -0.63 -40.86 14.50 -4.29 -0.06 -40.93 16 11 N -0.65 -27.79 3.00 -822.14 -2.47 -30.25 16 12 C 0.13 4.11 6.50 86.50 0.56 4.67 16 13 C 0.06 1.72 5.51 86.54 0.48 2.19 16 14 N -0.45 -12.30 4.69 -707.04 -3.31 -15.62 16 15 C 0.57 14.23 7.18 261.52 1.88 16.11 16 16 N -0.58 -13.59 8.66 -198.26 -1.72 -15.30 16 17 C 0.29 5.44 10.81 84.57 0.91 6.35 16 18 C -0.26 -5.06 6.90 36.69 0.25 -4.81 16 19 N 0.07 1.38 4.45 -45.72 -0.20 1.17 16 20 O -0.18 -3.89 18.55 18.89 0.35 -3.54 16 21 O -0.19 -3.77 16.00 18.88 0.30 -3.47 16 22 C 0.52 9.85 7.81 133.19 1.04 10.89 16 23 N -0.79 -9.83 8.66 -55.11 -0.48 -10.31 16 24 N -0.58 -12.98 9.66 -195.57 -1.89 -14.87 16 25 C 0.07 2.18 4.79 86.38 0.41 2.59 16 26 C 0.12 4.47 6.61 86.35 0.57 5.04 16 27 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 29 H 0.10 3.39 5.45 -2.39 -0.01 3.38 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.12 2.73 7.51 -2.39 -0.02 2.71 16 32 H 0.22 2.78 7.70 -2.91 -0.02 2.75 16 33 H 0.43 3.53 8.95 -92.71 -0.83 2.70 16 34 H 0.43 4.86 6.00 -92.71 -0.56 4.30 16 35 H 0.05 1.57 8.13 -2.38 -0.02 1.55 16 36 H 0.11 2.93 7.63 -2.39 -0.02 2.91 16 37 H 0.07 3.00 7.04 -2.39 -0.02 2.99 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.68 325.85 0.04 -74.63 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.22 Total: 20.38 kcal Atomic # 6 Polarization: 38.41 SS G_CDS: 7.45 Total: 45.87 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -9.81 Total: -134.02 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: 0.59 Total: -47.94 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -74.68 0.04 -74.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568249158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.020 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds