Wall clock time and date at job start Fri Apr 10 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34796 * 117.00201 * 180.02562 * 3 2 1 5 5 O 1.21551 * 119.99627 * 359.97438 * 4 3 2 6 6 C 1.47043 * 119.99863 * 180.02562 * 4 3 2 7 7 C 1.41142 * 126.49405 * 359.68688 * 6 4 3 8 8 N 1.30446 * 108.28678 * 179.81623 * 7 6 4 9 9 N 1.39905 * 109.22005 * 0.45233 * 8 7 6 10 10 C 1.46507 * 125.79335 * 179.69197 * 9 8 7 11 11 C 1.52999 * 109.47014 * 270.02205 * 10 9 8 12 12 H 1.08996 * 109.46977 * 55.00257 * 11 10 9 13 13 O 1.42898 * 109.46838 * 294.99774 * 11 10 9 14 14 C 1.50705 * 109.46982 * 174.99957 * 11 10 9 15 15 H 1.08004 * 119.99548 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99739 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00401 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99665 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47096 * 90.00033 * 18 16 14 20 20 H 1.48500 * 109.47043 * 209.99977 * 18 16 14 21 21 H 1.48499 * 109.47097 * 329.99973 * 18 16 14 22 22 C 1.35106 * 108.41466 * 359.70945 * 9 8 7 23 23 C 1.47839 * 126.47480 * 180.02562 * 22 9 8 24 24 N 1.34232 * 126.70559 * 0.02562 * 23 22 9 25 25 N 1.28978 * 107.24756 * 180.02562 * 24 23 22 26 26 N 1.28710 * 109.00580 * 359.97438 * 25 24 23 27 27 H 0.97000 * 125.31800 * 180.02562 * 26 25 24 28 28 N 1.28871 * 109.36954 * 359.73492 * 26 25 24 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 31 31 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 34 34 H 1.08005 * 125.85283 * 359.96216 * 7 6 4 35 35 H 1.09005 * 109.46987 * 30.02415 * 10 9 8 36 36 H 1.09000 * 109.47198 * 150.01624 * 10 9 8 37 37 H 0.96696 * 114.00343 * 299.99996 * 13 11 10 38 38 H 0.96992 * 120.00498 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0908 0.5817 -0.0005 6 6 3.9123 2.9045 0.0000 7 6 3.1845 4.1138 -0.0051 8 7 4.0347 5.1032 0.0012 9 7 5.3368 4.5915 0.0003 10 6 6.5689 5.3841 -0.0003 11 6 6.9966 5.6609 -1.4430 12 1 6.1752 6.1341 -1.9810 13 8 7.3388 4.4299 -2.0828 14 6 8.1927 6.5777 -1.4452 15 1 8.6062 6.9282 -0.5110 16 6 8.7591 6.9690 -2.6398 17 7 8.2560 6.5418 -3.7773 18 14 10.2414 8.1059 -2.6425 19 1 11.4859 7.2968 -2.6031 20 1 10.2280 8.9337 -3.8754 21 1 10.1884 8.9911 -1.4514 22 6 5.2652 3.2423 -0.0005 23 6 6.4058 2.3017 -0.0011 24 7 7.7094 2.6215 -0.0005 25 7 8.3743 1.5163 -0.0020 26 7 7.5476 0.5298 -0.0028 27 1 7.7940 -0.4084 -0.0036 28 7 6.3412 0.9831 0.0036 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.1083 4.2044 -0.0108 35 1 6.3934 6.3289 0.5143 36 1 7.3564 4.8320 0.5126 37 1 8.0643 3.9534 -1.6566 38 1 8.6542 6.8173 -4.6177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590775255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:24 Heat of formation + Delta-G solvation = 84.720478 kcal Electronic energy + Delta-G solvation = -27624.509647 eV Core-core repulsion = 23508.301033 eV Total energy + Delta-G solvation = -4116.208614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.26024 -41.19218 -39.70487 -36.30675 -36.09171 -34.21330 -33.31967 -32.65709 -32.15909 -31.70722 -30.03427 -28.55577 -25.68081 -24.66968 -24.23625 -23.52123 -22.19257 -21.68762 -20.45693 -19.88051 -18.81321 -17.77969 -17.04175 -16.91000 -16.51886 -16.36942 -15.67884 -15.21519 -14.64365 -14.52391 -14.23964 -13.99470 -13.60827 -13.54886 -13.32313 -13.22242 -12.78336 -12.71765 -12.08554 -11.91345 -11.69370 -11.44849 -11.29085 -11.22160 -10.95449 -10.91776 -10.88241 -10.82025 -10.67307 -10.44282 -10.17093 -9.90793 -9.66268 -8.91550 -8.67917 -8.59677 -8.07912 -6.07075 -4.27356 0.90122 1.39380 2.19396 2.21914 2.56178 2.68185 2.96040 3.26865 3.33591 3.35992 3.48494 3.72573 4.31905 4.36577 4.71099 4.84222 4.88653 5.02866 5.17176 5.20412 5.23078 5.42653 5.46951 5.62896 5.65711 5.79036 5.85620 5.90483 6.01119 6.17301 6.46752 6.48830 6.52412 6.67192 6.94158 7.54332 7.74033 7.76197 8.01310 8.11756 8.31840 8.73613 9.31857 9.49479 10.97372 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003853 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.153606 B = 7265.437507 C = 8241.702402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.358 6.358 4 C 0.535 3.465 5 O -0.488 6.488 6 C -0.261 4.261 7 C 0.091 3.909 8 N -0.274 5.274 9 N -0.298 5.298 10 C 0.082 3.918 11 C 0.226 3.774 12 H 0.066 0.934 13 O -0.564 6.564 14 C -0.572 4.572 15 H 0.062 0.938 16 C 0.082 3.918 17 N -0.855 5.855 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.241 3.759 23 C 0.220 3.780 24 N -0.248 5.248 25 N -0.052 5.052 26 N -0.233 5.233 27 H 0.474 0.526 28 N -0.210 5.210 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.199 0.801 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.351 0.649 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -13.731 9.310 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.276 6.276 4 C 0.380 3.620 5 O -0.374 6.374 6 C -0.278 4.278 7 C -0.094 4.094 8 N -0.095 5.095 9 N -0.076 5.076 10 C -0.037 4.037 11 C 0.167 3.833 12 H 0.083 0.917 13 O -0.368 6.368 14 C -0.610 4.610 15 H 0.080 0.920 16 C -0.125 4.125 17 N -0.490 5.490 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.103 3.897 23 C -0.061 4.061 24 N -0.123 5.123 25 N -0.047 5.047 26 N -0.079 5.079 27 H 0.328 0.672 28 N -0.064 5.064 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.216 0.784 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.198 0.802 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.429 -12.596 8.716 17.987 hybrid contribution 0.904 -0.915 0.164 1.296 sum -8.525 -13.511 8.880 18.277 Atomic orbital electron populations 1.21799 0.92956 1.02649 1.03511 1.22906 0.94932 0.80580 1.02356 1.86531 1.24181 1.31685 1.85187 1.19851 0.80268 0.88550 0.73373 1.90937 1.59261 1.41579 1.45664 1.18916 0.90349 0.92289 1.26211 1.23984 1.00256 0.88149 0.97048 1.77319 0.86443 1.22265 1.23477 1.49224 1.07421 1.02298 1.48614 1.23666 0.79156 0.95420 1.05431 1.19736 0.96167 0.83732 0.83631 0.91667 1.86562 1.55508 1.36411 1.58306 1.21396 1.15020 1.31414 0.93207 0.92007 1.25004 0.96922 0.95185 0.95389 1.70081 1.39597 1.41999 0.97337 0.86567 0.82857 0.80674 0.77673 1.20391 1.21099 1.19640 1.17348 0.89193 0.83739 0.99439 1.22162 0.90811 0.88138 1.05039 1.76115 1.02026 1.17605 1.16582 1.78906 1.20318 0.90418 1.15048 1.48035 1.01525 1.12485 1.45897 0.67183 1.75841 1.02635 1.10429 1.17502 0.90557 0.91545 0.91459 0.91530 0.91439 0.78446 0.87997 0.87728 0.80200 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.07 0.67 6.20 37.16 0.23 0.90 16 3 O -0.36 -4.70 10.07 -40.75 -0.41 -5.11 16 4 C 0.54 8.46 7.95 34.30 0.27 8.74 16 5 O -0.49 -8.29 13.14 -19.31 -0.25 -8.54 16 6 C -0.26 -4.44 6.16 -104.78 -0.64 -5.09 16 7 C 0.09 1.41 11.84 -17.04 -0.20 1.21 16 8 N -0.27 -5.04 12.48 30.83 0.38 -4.65 16 9 N -0.30 -5.85 3.56 -56.99 -0.20 -6.05 16 10 C 0.08 1.69 5.59 -4.04 -0.02 1.67 16 11 C 0.23 5.70 3.07 -27.88 -0.09 5.61 16 12 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 13 O -0.56 -14.87 11.80 -35.23 -0.42 -15.28 16 14 C -0.57 -15.30 8.76 -34.44 -0.30 -15.60 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 17 N -0.86 -25.19 12.84 55.43 0.71 -24.47 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.24 4.57 6.76 -82.05 -0.55 4.01 16 23 C 0.22 4.02 7.63 -156.24 -1.19 2.82 16 24 N -0.25 -4.52 7.97 32.07 0.26 -4.26 16 25 N -0.05 -0.79 13.46 60.35 0.81 0.02 16 26 N -0.23 -2.93 7.89 60.35 0.48 -2.45 16 27 H 0.47 3.41 8.96 -340.34 -3.05 0.36 16 28 N -0.21 -3.39 8.92 32.09 0.29 -3.10 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.20 2.22 8.06 -52.48 -0.42 1.80 16 35 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.10 2.06 6.43 -51.93 -0.33 1.73 16 37 H 0.35 8.76 6.65 45.56 0.30 9.06 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -34.17 335.78 -6.54 -40.70 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.00 Total: 6.50 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.21 Total: 5.75 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 2.72 Total: -44.98 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.08 Total: -28.93 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.17 -6.54 -40.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590775255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.423 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds