Wall clock time and date at job start Fri Apr 10 2020 14:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34796 * 117.00201 * 180.02562 * 3 2 1 5 5 O 1.21551 * 119.99627 * 359.97438 * 4 3 2 6 6 C 1.47043 * 119.99863 * 180.02562 * 4 3 2 7 7 C 1.41142 * 126.49405 * 359.68688 * 6 4 3 8 8 N 1.30446 * 108.28678 * 179.81623 * 7 6 4 9 9 N 1.39905 * 109.22005 * 0.45233 * 8 7 6 10 10 C 1.46507 * 125.79335 * 179.69197 * 9 8 7 11 11 C 1.52999 * 109.47014 * 270.02205 * 10 9 8 12 12 H 1.08996 * 109.46977 * 55.00257 * 11 10 9 13 13 O 1.42898 * 109.46838 * 294.99774 * 11 10 9 14 14 C 1.50705 * 109.46982 * 174.99957 * 11 10 9 15 15 H 1.08004 * 119.99548 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99739 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00401 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99665 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47096 * 90.00033 * 18 16 14 20 20 H 1.48500 * 109.47043 * 209.99977 * 18 16 14 21 21 H 1.48499 * 109.47097 * 329.99973 * 18 16 14 22 22 C 1.35106 * 108.41466 * 359.70945 * 9 8 7 23 23 C 1.47839 * 126.47480 * 180.02562 * 22 9 8 24 24 N 1.34232 * 126.70559 * 0.02562 * 23 22 9 25 25 N 1.28978 * 107.24756 * 180.02562 * 24 23 22 26 26 N 1.28710 * 109.00580 * 359.97438 * 25 24 23 27 27 H 0.97000 * 125.31800 * 180.02562 * 26 25 24 28 28 N 1.28871 * 109.36954 * 359.73492 * 26 25 24 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 31 31 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 34 34 H 1.08005 * 125.85283 * 359.96216 * 7 6 4 35 35 H 1.09005 * 109.46987 * 30.02415 * 10 9 8 36 36 H 1.09000 * 109.47198 * 150.01624 * 10 9 8 37 37 H 0.96696 * 114.00343 * 299.99996 * 13 11 10 38 38 H 0.96992 * 120.00498 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0908 0.5817 -0.0005 6 6 3.9123 2.9045 0.0000 7 6 3.1845 4.1138 -0.0051 8 7 4.0347 5.1032 0.0012 9 7 5.3368 4.5915 0.0003 10 6 6.5689 5.3841 -0.0003 11 6 6.9966 5.6609 -1.4430 12 1 6.1752 6.1341 -1.9810 13 8 7.3388 4.4299 -2.0828 14 6 8.1927 6.5777 -1.4452 15 1 8.6062 6.9282 -0.5110 16 6 8.7591 6.9690 -2.6398 17 7 8.2560 6.5418 -3.7773 18 14 10.2414 8.1059 -2.6425 19 1 11.4859 7.2968 -2.6031 20 1 10.2280 8.9337 -3.8754 21 1 10.1884 8.9911 -1.4514 22 6 5.2652 3.2423 -0.0005 23 6 6.4058 2.3017 -0.0011 24 7 7.7094 2.6215 -0.0005 25 7 8.3743 1.5163 -0.0020 26 7 7.5476 0.5298 -0.0028 27 1 7.7940 -0.4084 -0.0036 28 7 6.3412 0.9831 0.0036 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.1083 4.2044 -0.0108 35 1 6.3934 6.3289 0.5143 36 1 7.3564 4.8320 0.5126 37 1 8.0643 3.9534 -1.6566 38 1 8.6542 6.8173 -4.6177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590775255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:23 Heat of formation + Delta-G solvation = 58.862147 kcal Electronic energy + Delta-G solvation = -27625.630948 eV Core-core repulsion = 23508.301033 eV Total energy + Delta-G solvation = -4117.329915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.51134 -42.53719 -40.86115 -38.05552 -37.36870 -35.51301 -34.62018 -34.31099 -34.10234 -32.52619 -31.34111 -30.28668 -27.38860 -26.02605 -25.57228 -24.57650 -23.43615 -23.21343 -21.86966 -21.14732 -20.14133 -19.28238 -18.57131 -18.29124 -17.76209 -17.39595 -17.01120 -16.82200 -16.67775 -16.01823 -15.77640 -15.31294 -15.15470 -14.87341 -14.49003 -14.45272 -14.34923 -13.47062 -13.39300 -13.28249 -13.06381 -12.85675 -12.74766 -12.74193 -12.49860 -12.42513 -12.19319 -12.15985 -12.11684 -12.02672 -11.43749 -11.35612 -11.16666 -10.76736 -10.69929 -10.15859 -9.73869 -8.16285 -6.43323 -0.44088 0.14911 0.91370 0.96730 1.33511 1.42743 1.43874 1.46431 1.55114 1.84589 2.21805 2.37478 2.45422 3.02834 3.11185 3.44989 3.77379 3.94563 4.02441 4.14317 4.18736 4.21303 4.27239 4.32819 4.46391 4.47038 4.52872 4.71421 4.98070 5.04261 5.23314 5.28186 5.45640 5.52326 5.53091 5.64051 5.67930 5.97013 6.39780 6.66375 6.93473 7.05193 7.27855 7.43427 8.89002 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.003853 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.153606 B = 7265.437507 C = 8241.702402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 O -0.354 6.354 4 C 0.538 3.462 5 O -0.503 6.503 6 C -0.266 4.266 7 C 0.109 3.891 8 N -0.300 5.300 9 N -0.317 5.317 10 C 0.101 3.899 11 C 0.229 3.771 12 H 0.024 0.976 13 O -0.578 6.578 14 C -0.582 4.582 15 H 0.074 0.926 16 C 0.027 3.973 17 N -0.900 5.900 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.258 1.258 22 C 0.225 3.775 23 C 0.201 3.799 24 N -0.276 5.276 25 N -0.050 5.050 26 N -0.199 5.199 27 H 0.495 0.505 28 N -0.212 5.212 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.241 0.759 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.356 0.644 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 -14.626 10.393 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 O -0.272 6.272 4 C 0.383 3.617 5 O -0.391 6.391 6 C -0.282 4.282 7 C -0.077 4.077 8 N -0.120 5.120 9 N -0.095 5.095 10 C -0.019 4.019 11 C 0.171 3.829 12 H 0.042 0.958 13 O -0.383 6.383 14 C -0.620 4.620 15 H 0.092 0.908 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.182 1.182 22 C 0.087 3.913 23 C -0.080 4.080 24 N -0.151 5.151 25 N -0.044 5.044 26 N -0.052 5.052 27 H 0.355 0.645 28 N -0.067 5.067 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.257 0.743 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.203 0.797 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.035 -13.515 9.823 19.489 hybrid contribution 0.967 -0.843 -0.162 1.293 sum -9.068 -14.358 9.661 19.537 Atomic orbital electron populations 1.21820 0.90420 1.04255 1.03736 1.23257 0.96845 0.78968 1.02493 1.86522 1.22355 1.33730 1.84545 1.19689 0.81138 0.87800 0.73120 1.90917 1.59938 1.41846 1.46355 1.19211 0.89956 0.93565 1.25475 1.24667 1.01680 0.86820 0.94501 1.77285 0.86357 1.23553 1.24817 1.49012 1.07417 1.02557 1.50516 1.23167 0.80262 0.96334 1.02092 1.19484 0.94574 0.83111 0.85775 0.95796 1.86508 1.55862 1.36789 1.59167 1.21827 1.15262 1.31212 0.93669 0.90829 1.25924 0.99959 0.96753 0.94982 1.70233 1.41482 1.43941 0.98009 0.85453 0.78967 0.78610 0.77924 1.19879 1.21132 1.18238 1.17722 0.90368 0.83653 0.99517 1.22232 0.90833 0.88733 1.06188 1.76065 1.02299 1.18855 1.17846 1.78828 1.20193 0.90432 1.14987 1.48073 1.00391 1.13315 1.43375 0.64503 1.75798 1.03761 1.09680 1.17445 0.88248 0.91070 0.91456 0.91123 0.91665 0.74307 0.87054 0.87011 0.79677 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 71.98 0.74 -0.92 16 2 C 0.06 1.04 6.20 71.98 0.45 1.49 16 3 O -0.35 -8.61 10.07 -57.08 -0.57 -9.19 16 4 C 0.54 16.36 7.95 70.13 0.56 16.92 16 5 O -0.50 -16.55 13.14 19.67 0.26 -16.29 16 6 C -0.27 -8.84 6.16 -19.96 -0.12 -8.96 16 7 C 0.11 3.22 11.84 85.61 1.01 4.24 16 8 N -0.30 -10.96 12.48 -56.37 -0.70 -11.67 16 9 N -0.32 -12.60 3.56 -334.23 -1.19 -13.79 16 10 C 0.10 4.23 5.59 86.38 0.48 4.72 16 11 C 0.23 11.89 3.07 29.85 0.09 11.98 16 12 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 13 O -0.58 -31.40 11.80 -148.98 -1.76 -33.16 16 14 C -0.58 -31.44 8.76 25.60 0.22 -31.21 16 15 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 16 C 0.03 1.48 5.40 84.65 0.46 1.94 16 17 N -0.90 -54.29 12.84 21.45 0.28 -54.02 16 18 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 C 0.22 8.54 6.76 41.47 0.28 8.82 16 23 C 0.20 7.34 7.63 137.07 1.05 8.39 16 24 N -0.28 -10.06 7.97 -52.44 -0.42 -10.48 16 25 N -0.05 -1.49 13.46 37.02 0.50 -0.99 16 26 N -0.20 -4.76 7.89 37.02 0.29 -4.47 16 27 H 0.50 6.21 8.96 -347.51 -3.12 3.10 16 28 N -0.21 -6.67 8.92 -52.39 -0.47 -7.14 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.24 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.11 4.32 8.14 -2.38 -0.02 4.30 16 36 H 0.11 4.46 6.43 -2.39 -0.02 4.45 16 37 H 0.36 18.21 6.65 -74.06 -0.49 17.71 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -74.85 335.78 1.00 -73.85 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -2.45 Total: 24.84 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.22 Total: 17.40 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -1.71 Total: -102.55 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -2.07 Total: -58.64 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.85 1.00 -73.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590775255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.710 kcal (2) G-P(sol) polarization free energy of solvation -74.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds