Wall clock time and date at job start Fri Apr 10 2020 14:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36549 * 119.31550 * 2 1 4 4 C 1.36298 * 119.48704 * 180.25666 * 3 2 1 5 5 C 1.48351 * 120.83543 * 179.72557 * 4 3 2 6 6 N 1.33716 * 126.31442 * 179.68520 * 5 4 3 7 7 N 1.28565 * 109.84394 * 179.85855 * 6 5 4 8 8 N 1.28917 * 109.73472 * 0.41672 * 7 6 5 9 9 H 0.96997 * 126.43122 * 179.74647 * 8 7 6 10 10 N 1.32023 * 126.30935 * 0.02562 * 5 4 3 11 11 C 1.46865 * 118.32939 * 359.50759 * 4 3 2 12 12 O 1.21735 * 120.66580 * 180.26172 * 11 4 3 13 13 N 1.34964 * 118.67499 * 0.52940 * 11 4 3 14 14 C 1.46492 * 119.85059 * 179.72954 * 13 11 4 15 15 C 1.53000 * 109.47350 * 269.98084 * 14 13 11 16 16 O 1.42900 * 109.47044 * 64.99772 * 15 14 13 17 17 C 1.42907 * 113.99856 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46753 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00289 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99590 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99911 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00002 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46778 * 90.00643 * 22 20 18 24 24 H 1.48502 * 109.47018 * 210.00248 * 22 20 18 25 25 H 1.48495 * 109.47064 * 330.00748 * 22 20 18 26 26 C 1.34294 * 119.31429 * 180.02562 * 2 1 3 27 27 O 1.21589 * 119.08330 * 359.97339 * 26 2 1 28 28 H 1.09006 * 109.47419 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47253 * 119.99969 * 1 2 3 30 30 H 1.09006 * 109.47169 * 240.00158 * 1 2 3 31 31 H 1.08002 * 120.25283 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47242 * 29.97842 * 14 13 11 33 33 H 1.08997 * 109.47330 * 149.97937 * 14 13 11 34 34 H 1.09001 * 109.47335 * 184.99862 * 15 14 13 35 35 H 1.09000 * 109.47206 * 305.00020 * 15 14 13 36 36 H 1.08993 * 109.46825 * 300.00469 * 17 16 15 37 37 H 1.09005 * 109.46685 * 60.00172 * 17 16 15 38 38 H 0.97006 * 119.99596 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1336 1.1906 0.0000 4 6 3.4965 1.1947 -0.0053 5 6 4.2531 2.4708 -0.0116 6 7 5.5838 2.6025 -0.0112 7 7 5.8990 3.8488 -0.0206 8 7 4.8293 4.5684 -0.0186 9 1 4.7869 5.5375 -0.0208 10 7 3.7367 3.6858 -0.0122 11 6 4.1974 -0.0959 0.0002 12 8 5.4138 -0.1419 0.0006 13 7 3.4658 -1.2301 -0.0006 14 6 4.1383 -2.5315 -0.0012 15 6 4.3724 -2.9841 -1.4438 16 8 5.2836 -2.0874 -2.0824 17 6 5.5714 -2.4215 -3.4417 18 6 6.5363 -1.4148 -4.0129 19 1 6.8944 -0.6015 -3.3993 20 6 6.9629 -1.5327 -5.3188 21 7 6.5272 -2.5235 -6.0659 22 14 8.1585 -0.2844 -6.0272 23 1 9.5509 -0.7441 -5.7923 24 1 7.9225 -0.1460 -7.4868 25 1 7.9525 1.0290 -5.3656 26 6 2.1225 -1.1710 -0.0005 27 8 1.4853 -2.2066 -0.0005 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 1.5865 2.1219 -0.0004 32 1 5.0958 -2.4460 0.5126 33 1 3.5145 -3.2631 0.5124 34 1 4.7916 -3.9903 -1.4456 35 1 3.4251 -2.9842 -1.9829 36 1 6.0151 -3.4161 -3.4852 37 1 4.6486 -2.4097 -4.0219 38 1 6.8270 -2.6062 -6.9848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592558013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:32 Heat of formation + Delta-G solvation = 58.681275 kcal Electronic energy + Delta-G solvation = -27517.002611 eV Core-core repulsion = 23399.664852 eV Total energy + Delta-G solvation = -4117.337758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.18122 -42.20271 -38.83206 -37.71356 -36.50394 -34.98934 -34.21488 -33.05002 -32.64892 -31.31237 -29.75402 -27.47744 -26.86491 -25.46410 -24.11920 -23.80631 -22.55479 -22.21005 -21.45106 -19.52990 -18.74026 -17.62954 -17.15282 -17.00926 -16.46196 -16.27446 -15.83020 -15.42175 -15.17219 -14.77878 -14.58336 -14.30767 -14.23255 -14.02635 -13.53821 -13.49987 -13.18698 -12.89293 -12.22327 -12.14648 -12.07940 -11.86936 -11.37354 -11.01338 -10.95524 -10.86577 -10.80482 -10.77925 -10.72311 -10.63992 -10.05306 -9.87454 -9.40401 -9.00263 -8.75273 -8.53894 -8.09709 -6.02153 -4.02163 0.41211 1.09836 1.70726 1.98748 2.07719 2.46536 2.83775 3.37434 3.41684 3.49609 3.55763 3.60578 4.05189 4.30248 4.43077 4.52921 4.64304 4.85883 4.94873 5.11378 5.25107 5.34365 5.34623 5.37422 5.46325 5.53410 5.62730 5.78072 5.90016 6.10691 6.23360 6.28500 6.45075 7.15021 7.21529 7.49481 7.58018 7.91395 8.08793 8.17661 8.24251 8.65375 9.13188 9.62274 11.09564 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.009409 B = 0.005142 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.107459 B = 5443.618320 C = 7523.415513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.533 5.533 3 C 0.213 3.787 4 C -0.183 4.183 5 C 0.287 3.713 6 N -0.256 5.256 7 N 0.009 4.991 8 N -0.303 5.303 9 H 0.467 0.533 10 N -0.310 5.310 11 C 0.554 3.446 12 O -0.434 6.434 13 N -0.542 5.542 14 C 0.118 3.882 15 C 0.045 3.955 16 O -0.381 6.381 17 C 0.196 3.804 18 C -0.507 4.507 19 H 0.069 0.931 20 C 0.055 3.945 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.271 1.271 26 C 0.694 3.306 27 O -0.537 6.537 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.185 0.815 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.005 0.995 37 H 0.001 0.999 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 11.264 15.992 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.252 5.252 3 C 0.083 3.917 4 C -0.198 4.198 5 C 0.005 3.995 6 N -0.134 5.134 7 N 0.012 4.988 8 N -0.149 5.149 9 H 0.321 0.679 10 N -0.155 5.155 11 C 0.342 3.658 12 O -0.299 6.299 13 N -0.287 5.287 14 C -0.002 4.002 15 C -0.033 4.033 16 O -0.301 6.301 17 C 0.122 3.878 18 C -0.545 4.545 19 H 0.087 0.913 20 C -0.145 4.145 21 N -0.542 5.542 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.196 1.196 26 C 0.398 3.602 27 O -0.411 6.411 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.202 0.798 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.046 10.968 15.901 23.884 hybrid contribution -0.035 0.850 -0.894 1.234 sum -14.081 11.818 15.006 23.731 Atomic orbital electron populations 1.22117 0.74216 1.04439 1.05000 1.44533 1.09681 1.04069 1.66893 1.22282 0.92058 0.90150 0.87189 1.18349 0.90504 0.89247 1.21650 1.22362 0.89255 0.90921 0.96919 1.75888 1.12178 1.06739 1.18575 1.78495 1.13125 0.98090 1.09045 1.50941 1.00744 1.12029 1.51184 0.67851 1.78679 1.10286 0.99080 1.27453 1.17733 0.87787 0.82445 0.77826 1.91016 1.11407 1.85502 1.42014 1.46276 1.04973 1.10482 1.66959 1.21927 0.98627 0.81025 0.98636 1.22579 0.94330 0.94389 0.92039 1.88014 1.62724 1.50487 1.28849 1.20185 0.95105 0.96195 0.76314 1.21090 1.25497 1.11412 0.96507 0.91323 1.24930 0.96872 0.96139 0.96582 1.69978 1.44741 1.31053 1.08402 0.86368 0.81076 0.81584 0.77712 1.20360 1.21227 1.19622 1.15822 0.82254 0.83720 0.78447 1.91003 1.65471 1.30666 1.53912 0.88694 0.89641 0.89791 0.79757 0.87403 0.87631 0.92493 0.94106 0.97693 0.98137 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 9.96 59.85 0.60 1.06 16 2 N -0.53 -5.33 2.99 -128.80 -0.39 -5.72 16 3 C 0.21 2.01 10.04 -16.15 -0.16 1.84 16 4 C -0.18 -2.60 6.03 -102.94 -0.62 -3.22 16 5 C 0.29 4.29 7.94 -156.43 -1.24 3.05 16 6 N -0.26 -4.53 11.22 32.11 0.36 -4.17 16 7 N 0.01 0.13 13.42 60.35 0.81 0.94 16 8 N -0.30 -3.06 8.44 60.35 0.51 -2.55 16 9 H 0.47 2.28 8.96 -331.92 -2.98 -0.70 16 10 N -0.31 -3.61 12.59 32.13 0.40 -3.21 16 11 C 0.55 9.89 7.24 -12.69 -0.09 9.80 16 12 O -0.43 -9.49 14.74 -1.81 -0.03 -9.52 16 13 N -0.54 -8.82 2.54 -122.26 -0.31 -9.13 16 14 C 0.12 1.90 5.54 -4.05 -0.02 1.88 16 15 C 0.05 0.89 6.28 37.16 0.23 1.12 16 16 O -0.38 -9.75 9.13 -42.20 -0.39 -10.13 16 17 C 0.20 5.67 5.69 36.01 0.20 5.87 16 18 C -0.51 -15.81 9.43 -34.44 -0.32 -16.14 16 19 H 0.07 2.20 7.81 -52.49 -0.41 1.79 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -28.00 13.29 55.43 0.74 -27.26 16 22 Si 0.91 23.12 29.54 -169.99 -5.02 18.10 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.69 9.80 8.10 -87.63 -0.71 9.09 16 27 O -0.54 -8.34 15.68 5.29 0.08 -8.26 16 28 H 0.09 0.17 7.73 -51.93 -0.40 -0.23 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.19 0.95 7.66 -52.49 -0.40 0.55 16 32 H 0.11 1.74 7.44 -51.93 -0.39 1.35 16 33 H 0.11 1.40 7.36 -51.93 -0.38 1.02 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -41.15 340.74 -6.96 -48.11 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -6.63 Total: -8.26 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: -2.24 Total: 15.92 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 2.12 Total: -51.10 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.33 Total: -27.91 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -41.15 -6.96 -48.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592558013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.787 kcal (2) G-P(sol) polarization free energy of solvation -41.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds