Wall clock time and date at job start Fri Apr 10 2020 14:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36549 * 119.31550 * 2 1 4 4 C 1.36298 * 119.48704 * 180.25666 * 3 2 1 5 5 C 1.48351 * 120.83543 * 179.72557 * 4 3 2 6 6 N 1.33716 * 126.31442 * 179.68520 * 5 4 3 7 7 N 1.28565 * 109.84394 * 179.85855 * 6 5 4 8 8 N 1.28917 * 109.73472 * 0.41672 * 7 6 5 9 9 H 0.96997 * 126.43122 * 179.74647 * 8 7 6 10 10 N 1.32023 * 126.30935 * 0.02562 * 5 4 3 11 11 C 1.46865 * 118.32939 * 359.50759 * 4 3 2 12 12 O 1.21735 * 120.66580 * 180.26172 * 11 4 3 13 13 N 1.34964 * 118.67499 * 0.52940 * 11 4 3 14 14 C 1.46492 * 119.85059 * 179.72954 * 13 11 4 15 15 C 1.53000 * 109.47350 * 269.98084 * 14 13 11 16 16 O 1.42900 * 109.47044 * 64.99772 * 15 14 13 17 17 C 1.42907 * 113.99856 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46753 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00289 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99590 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99911 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00002 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46778 * 90.00643 * 22 20 18 24 24 H 1.48502 * 109.47018 * 210.00248 * 22 20 18 25 25 H 1.48495 * 109.47064 * 330.00748 * 22 20 18 26 26 C 1.34294 * 119.31429 * 180.02562 * 2 1 3 27 27 O 1.21589 * 119.08330 * 359.97339 * 26 2 1 28 28 H 1.09006 * 109.47419 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47253 * 119.99969 * 1 2 3 30 30 H 1.09006 * 109.47169 * 240.00158 * 1 2 3 31 31 H 1.08002 * 120.25283 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47242 * 29.97842 * 14 13 11 33 33 H 1.08997 * 109.47330 * 149.97937 * 14 13 11 34 34 H 1.09001 * 109.47335 * 184.99862 * 15 14 13 35 35 H 1.09000 * 109.47206 * 305.00020 * 15 14 13 36 36 H 1.08993 * 109.46825 * 300.00469 * 17 16 15 37 37 H 1.09005 * 109.46685 * 60.00172 * 17 16 15 38 38 H 0.97006 * 119.99596 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1336 1.1906 0.0000 4 6 3.4965 1.1947 -0.0053 5 6 4.2531 2.4708 -0.0116 6 7 5.5838 2.6025 -0.0112 7 7 5.8990 3.8488 -0.0206 8 7 4.8293 4.5684 -0.0186 9 1 4.7869 5.5375 -0.0208 10 7 3.7367 3.6858 -0.0122 11 6 4.1974 -0.0959 0.0002 12 8 5.4138 -0.1419 0.0006 13 7 3.4658 -1.2301 -0.0006 14 6 4.1383 -2.5315 -0.0012 15 6 4.3724 -2.9841 -1.4438 16 8 5.2836 -2.0874 -2.0824 17 6 5.5714 -2.4215 -3.4417 18 6 6.5363 -1.4148 -4.0129 19 1 6.8944 -0.6015 -3.3993 20 6 6.9629 -1.5327 -5.3188 21 7 6.5272 -2.5235 -6.0659 22 14 8.1585 -0.2844 -6.0272 23 1 9.5509 -0.7441 -5.7923 24 1 7.9225 -0.1460 -7.4868 25 1 7.9525 1.0290 -5.3656 26 6 2.1225 -1.1710 -0.0005 27 8 1.4853 -2.2066 -0.0005 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 1.5865 2.1219 -0.0004 32 1 5.0958 -2.4460 0.5126 33 1 3.5145 -3.2631 0.5124 34 1 4.7916 -3.9903 -1.4456 35 1 3.4251 -2.9842 -1.9829 36 1 6.0151 -3.4161 -3.4852 37 1 4.6486 -2.4097 -4.0219 38 1 6.8270 -2.6062 -6.9848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592558013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:31 Heat of formation + Delta-G solvation = 26.060872 kcal Electronic energy + Delta-G solvation = -27518.417137 eV Core-core repulsion = 23399.664852 eV Total energy + Delta-G solvation = -4118.752285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.122 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.19365 -43.30542 -40.06927 -38.98372 -38.18512 -36.36361 -35.20485 -34.94103 -34.06205 -32.39699 -31.16550 -29.15502 -28.09005 -26.54091 -25.20740 -25.07525 -24.47460 -23.72524 -22.63511 -20.58740 -19.71776 -18.78593 -18.64772 -18.22749 -18.01454 -17.46657 -17.43147 -16.99894 -16.45295 -16.27977 -15.93863 -15.74674 -15.56785 -15.31757 -15.03398 -14.62443 -14.49421 -13.94731 -13.74819 -13.33032 -13.20854 -13.08300 -12.92933 -12.82249 -12.75184 -12.53660 -12.13335 -12.06836 -11.92303 -11.89205 -11.79820 -11.32263 -11.21611 -10.91420 -10.79410 -10.28210 -9.51082 -8.35864 -6.47061 -0.49489 0.08477 0.75378 0.80688 1.26927 1.33382 1.37029 1.37216 1.49422 1.76585 2.30997 2.41090 2.62463 2.97023 3.10583 3.19386 3.35653 3.77485 3.95620 4.01976 4.07035 4.21634 4.26578 4.37390 4.45601 4.51743 4.54471 4.55686 4.76672 4.82376 4.89336 5.01287 5.12498 5.22748 5.51972 5.77516 5.92829 6.08317 6.44584 6.48854 6.78875 6.86157 7.15771 7.24311 8.76497 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.009409 B = 0.005142 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.107459 B = 5443.618320 C = 7523.415513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.522 5.522 3 C 0.266 3.734 4 C -0.230 4.230 5 C 0.278 3.722 6 N -0.319 5.319 7 N -0.005 5.005 8 N -0.268 5.268 9 H 0.489 0.511 10 N -0.287 5.287 11 C 0.544 3.456 12 O -0.494 6.494 13 N -0.551 5.551 14 C 0.124 3.876 15 C 0.039 3.961 16 O -0.397 6.397 17 C 0.213 3.787 18 C -0.543 4.543 19 H 0.049 0.951 20 C 0.011 3.989 21 N -0.928 5.928 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.266 1.266 25 H -0.273 1.273 26 C 0.689 3.311 27 O -0.553 6.553 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.242 0.758 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.072 0.928 35 H 0.037 0.963 36 H -0.011 1.011 37 H -0.018 1.018 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 13.461 16.076 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.238 5.238 3 C 0.135 3.865 4 C -0.244 4.244 5 C -0.004 4.004 6 N -0.196 5.196 7 N -0.001 5.001 8 N -0.120 5.120 9 H 0.348 0.652 10 N -0.133 5.133 11 C 0.336 3.664 12 O -0.365 6.365 13 N -0.295 5.295 14 C 0.003 3.997 15 C -0.039 4.039 16 O -0.316 6.316 17 C 0.138 3.862 18 C -0.581 4.581 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.191 1.191 25 H -0.198 1.198 26 C 0.392 3.608 27 O -0.427 6.427 28 H 0.164 0.836 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.007 0.993 37 H -0.001 1.001 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.443 13.167 15.999 26.452 hybrid contribution 0.474 0.160 -0.869 1.002 sum -15.970 13.327 15.130 25.721 Atomic orbital electron populations 1.22618 0.70843 1.07984 1.05245 1.44863 1.11443 1.02953 1.64588 1.22945 0.90496 0.91371 0.81665 1.18196 0.92107 0.87437 1.26617 1.22478 0.88613 0.91956 0.97329 1.75859 1.14334 1.08172 1.21205 1.78412 1.14107 0.97775 1.09849 1.50975 0.99785 1.13004 1.48235 0.65162 1.78603 1.09879 0.97845 1.27014 1.18437 0.87543 0.83891 0.76540 1.90972 1.13799 1.86356 1.45359 1.46386 1.06138 1.10137 1.66841 1.21857 0.99423 0.82273 0.96105 1.22883 0.92965 0.94491 0.93590 1.87999 1.64227 1.52240 1.27166 1.19778 0.93637 0.94880 0.77930 1.21283 1.27305 1.11957 0.97551 0.93253 1.25869 0.98301 0.98163 0.96413 1.70060 1.45328 1.32275 1.09031 0.85281 0.78737 0.78400 0.77592 1.19010 1.19064 1.19810 1.16032 0.81433 0.85013 0.78326 1.90991 1.65456 1.31645 1.54620 0.83595 0.90127 0.88898 0.74148 0.88033 0.84424 0.91017 0.94472 0.99285 1.00073 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.96 127.77 1.27 1.74 16 2 N -0.52 -8.82 2.99 -679.95 -2.04 -10.86 16 3 C 0.27 4.11 10.04 83.51 0.84 4.95 16 4 C -0.23 -6.38 6.03 -18.78 -0.11 -6.49 16 5 C 0.28 8.20 7.94 137.38 1.09 9.29 16 6 N -0.32 -11.69 11.22 -52.31 -0.59 -12.27 16 7 N -0.01 -0.15 13.42 37.02 0.50 0.35 16 8 N -0.27 -4.97 8.44 37.02 0.31 -4.65 16 9 H 0.49 3.56 8.96 -340.35 -3.05 0.51 16 10 N -0.29 -6.05 12.59 -52.27 -0.66 -6.71 16 11 C 0.54 20.22 7.24 86.47 0.63 20.84 16 12 O -0.49 -23.26 14.74 2.20 0.03 -23.23 16 13 N -0.55 -18.21 2.54 -777.25 -1.98 -20.19 16 14 C 0.12 4.11 5.54 86.38 0.48 4.59 16 15 C 0.04 1.57 6.28 71.98 0.45 2.02 16 16 O -0.40 -21.40 9.13 -142.32 -1.30 -22.70 16 17 C 0.21 12.91 5.69 71.24 0.41 13.31 16 18 C -0.54 -35.24 9.43 25.60 0.24 -34.99 16 19 H 0.05 3.32 7.81 -2.91 -0.02 3.30 16 20 C 0.01 0.68 5.46 84.65 0.46 1.14 16 21 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 22 Si 0.98 47.75 29.54 68.60 2.03 49.78 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 26 C 0.69 18.62 8.10 179.30 1.45 20.07 16 27 O -0.55 -16.44 15.68 -4.00 -0.06 -16.50 16 28 H 0.15 -0.47 7.73 -2.38 -0.02 -0.49 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.24 0.96 7.66 -2.91 -0.02 0.94 16 32 H 0.10 3.49 7.44 -2.39 -0.02 3.47 16 33 H 0.14 3.60 7.36 -2.39 -0.02 3.58 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 38 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -96.15 340.74 1.82 -94.33 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -1.92 Total: -5.99 kcal Atomic # 6 Polarization: 29.27 SS G_CDS: 7.21 Total: 36.48 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -4.16 Total: -112.16 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -1.33 Total: -62.43 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -96.15 1.82 -94.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592558013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.387 kcal (2) G-P(sol) polarization free energy of solvation -96.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds