Wall clock time and date at job start Fri Apr 10 2020 14:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48506 * 109.47250 * 270.00225 * 3 2 1 5 5 H 1.48501 * 109.47174 * 30.00174 * 3 2 1 6 6 H 1.48500 * 109.47306 * 150.00366 * 3 2 1 7 7 C 1.38799 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00022 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99897 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46931 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99997 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99787 * 180.02562 * 13 11 10 15 15 C 1.53124 * 109.52145 * 85.31778 * 14 13 11 16 16 C 1.53039 * 109.27498 * 177.55744 * 15 14 13 17 17 N 1.46843 * 109.52391 * 300.81655 * 16 15 14 18 18 C 1.38412 * 111.00133 * 185.84094 * 17 16 15 19 19 N 1.32490 * 119.21756 * 235.52818 * 18 17 16 20 20 C 1.32279 * 120.73929 * 179.72038 * 19 18 17 21 21 C 1.38603 * 119.19520 * 0.53802 * 20 19 18 22 22 C 1.38609 * 118.55916 * 359.73246 * 21 20 19 23 23 N 1.32274 * 119.19537 * 359.97438 * 22 21 20 24 24 C 1.46854 * 111.19690 * 61.74512 * 17 16 15 25 25 C 1.53029 * 109.52283 * 298.25524 * 24 17 16 26 26 H 0.96992 * 120.00554 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46940 * 60.00654 * 10 9 7 28 28 H 1.08996 * 109.47839 * 300.00694 * 10 9 7 29 29 H 0.97003 * 119.99706 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.57436 * 325.15457 * 14 13 11 31 31 H 1.08997 * 109.50088 * 297.49652 * 15 14 13 32 32 H 1.09004 * 109.50324 * 57.61826 * 15 14 13 33 33 H 1.09001 * 109.45805 * 180.80724 * 16 15 14 34 34 H 1.08997 * 109.46104 * 60.83468 * 16 15 14 35 35 H 1.07997 * 120.39733 * 180.29570 * 20 19 18 36 36 H 1.07999 * 120.72048 * 179.71331 * 21 20 19 37 37 H 1.07992 * 120.39965 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.45788 * 178.23958 * 24 17 16 39 39 H 1.09003 * 109.45264 * 58.26841 * 24 17 16 40 40 H 1.08994 * 109.50822 * 299.23828 * 25 24 17 41 41 H 1.09001 * 109.50199 * 179.11868 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0021 13 7 2.8445 -6.3430 -0.0008 14 6 2.3308 -7.7150 -0.0019 15 6 2.0425 -8.1522 -1.4409 16 6 1.5643 -9.6059 -1.4409 17 7 2.5988 -10.4629 -0.8480 18 6 2.2544 -11.7996 -0.9506 19 7 2.2075 -12.5414 0.1461 20 6 1.8767 -13.8206 0.0835 21 6 1.5884 -14.3849 -1.1492 22 6 1.6524 -13.5815 -2.2769 23 7 1.9841 -12.3080 -2.1439 24 6 2.8588 -10.0923 0.5490 25 6 3.3757 -8.6532 0.6086 26 1 -0.4850 0.8399 0.0004 27 1 3.1246 -3.7312 0.8896 28 1 3.1248 -3.7312 -0.8904 29 1 3.8013 -6.1833 -0.0004 30 1 1.4128 -7.7617 0.5838 31 1 1.2681 -7.5143 -1.8668 32 1 2.9520 -8.0683 -2.0358 33 1 1.3719 -9.9248 -2.4654 34 1 0.6473 -9.6866 -0.8572 35 1 1.8355 -14.4190 0.9816 36 1 1.3200 -15.4279 -1.2294 37 1 1.4340 -13.9904 -3.2523 38 1 3.6065 -10.7645 0.9699 39 1 1.9356 -10.1707 1.1233 40 1 4.3061 -8.5770 0.0459 41 1 3.5537 -8.3731 1.6468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048779597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:37 Heat of formation + Delta-G solvation = 28.160450 kcal Electronic energy + Delta-G solvation = -23700.040821 eV Core-core repulsion = 20127.672795 eV Total energy + Delta-G solvation = -3572.368026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61246 -39.78618 -38.40251 -35.21551 -34.13881 -32.52871 -32.41647 -31.20878 -30.55446 -28.71564 -25.52493 -25.24221 -24.80386 -23.14256 -22.72802 -20.38238 -20.16225 -18.35717 -17.87133 -17.68361 -16.41280 -16.29807 -16.00536 -15.73127 -15.08504 -14.89922 -14.79697 -14.76403 -14.17090 -13.94546 -13.81278 -13.75692 -13.48851 -13.10310 -12.61673 -12.49251 -12.01341 -11.85343 -11.57898 -11.33919 -11.19901 -11.08252 -11.05297 -11.00990 -10.83201 -10.72097 -10.49464 -9.80476 -9.54607 -9.37031 -9.06236 -8.87255 -8.74178 -8.22699 -6.49031 -6.20917 -3.91340 0.57484 0.74060 2.78270 3.03296 3.10059 3.23019 3.28474 3.32473 3.40221 3.70903 3.76742 4.21260 4.21606 4.30465 4.51250 4.64128 4.73654 4.75951 4.85486 4.90656 5.04562 5.13041 5.14251 5.23581 5.33586 5.40355 5.44274 5.59062 5.62567 5.67740 5.72818 5.88048 5.91074 5.98646 6.14392 6.16406 6.36741 6.40434 6.66016 6.88868 7.60422 7.73501 7.78371 8.36052 8.62905 9.24443 10.86498 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.047499 B = 0.001979 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.348193 B =14146.244735 C =14325.306906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.144 3.856 15 C -0.129 4.129 16 C 0.071 3.929 17 N -0.460 5.460 18 C 0.496 3.504 19 N -0.553 5.553 20 C 0.174 3.826 21 C -0.267 4.267 22 C 0.175 3.825 23 N -0.531 5.531 24 C 0.075 3.925 25 C -0.127 4.127 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.168 0.832 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -29.071 -1.155 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.387 5.387 14 C 0.038 3.962 15 C -0.168 4.168 16 C -0.055 4.055 17 N -0.179 5.179 18 C 0.140 3.860 19 N -0.273 5.273 20 C 0.007 3.993 21 C -0.290 4.290 22 C 0.007 3.993 23 N -0.249 5.249 24 C -0.052 4.052 25 C -0.165 4.165 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.185 0.815 36 H 0.164 0.836 37 H 0.187 0.813 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.620 -28.128 -1.328 28.715 hybrid contribution 1.706 0.192 0.244 1.734 sum 7.325 -27.937 -1.084 28.901 Atomic orbital electron populations 1.70015 1.05944 1.27444 1.46902 1.24994 0.95030 0.99032 0.94558 0.86168 0.79408 0.81575 0.78345 1.20276 1.20762 1.19702 1.22870 0.94915 0.91668 1.58891 0.90926 1.85388 1.04972 0.96331 1.96716 1.23537 1.06549 0.95415 1.04934 1.20326 0.86566 0.86299 0.74884 1.90697 1.15363 1.85576 1.47541 1.46043 1.09921 1.05058 1.77684 1.20948 0.97864 0.81162 0.96181 1.22065 1.03153 0.93859 0.97712 1.22194 0.90443 0.91928 1.00905 1.58404 1.40990 0.98288 1.20235 1.21098 0.88249 0.91967 0.84657 1.68404 1.19311 1.08000 1.31591 1.23079 0.88328 0.89992 0.97948 1.22733 1.08060 1.03120 0.95133 1.23122 0.88849 0.87855 0.99472 1.68044 1.16410 1.14907 1.25580 1.21989 1.01991 0.96029 0.85231 1.21959 0.99235 0.93137 1.02202 0.92195 0.89236 0.89210 0.76754 0.89454 0.89631 0.90426 0.88473 0.93342 0.81519 0.83601 0.81323 0.88932 0.92515 0.90297 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.78 7.82 -10.98 -0.09 9.69 16 12 O -0.52 -11.55 15.52 5.56 0.09 -11.46 16 13 N -0.73 -9.59 5.08 -53.68 -0.27 -9.86 16 14 C 0.14 1.69 2.52 -67.80 -0.17 1.52 16 15 C -0.13 -1.49 5.67 -26.65 -0.15 -1.64 16 16 C 0.07 0.78 5.33 -3.83 -0.02 0.76 16 17 N -0.46 -4.99 4.72 -175.43 -0.83 -5.81 16 18 C 0.50 5.53 7.17 -322.81 -2.32 3.22 16 19 N -0.55 -5.56 8.67 -13.93 -0.12 -5.68 16 20 C 0.17 1.20 11.30 -17.22 -0.19 1.01 16 21 C -0.27 -1.50 10.16 -39.31 -0.40 -1.90 16 22 C 0.17 1.25 11.30 -17.22 -0.19 1.06 16 23 N -0.53 -5.64 9.65 -13.93 -0.13 -5.78 16 24 C 0.07 0.72 4.63 -3.83 -0.02 0.70 16 25 C -0.13 -1.14 5.57 -26.65 -0.15 -1.28 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.40 4.07 8.61 -40.82 -0.35 3.72 16 30 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.07 7.55 -51.93 -0.39 0.68 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 37 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.09 0.86 7.67 -51.93 -0.40 0.46 16 39 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -36.06 357.73 -11.39 -47.45 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.73 Total: 1.37 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.28 Total: -2.70 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.62 Total: -52.62 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.06 -11.39 -47.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048779597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.612 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds