Wall clock time and date at job start Fri Apr 10 2020 14:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48506 * 109.47250 * 270.00225 * 3 2 1 5 5 H 1.48501 * 109.47174 * 30.00174 * 3 2 1 6 6 H 1.48500 * 109.47306 * 150.00366 * 3 2 1 7 7 C 1.38799 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00022 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99897 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46931 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99997 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99787 * 180.02562 * 13 11 10 15 15 C 1.53124 * 109.52145 * 85.31778 * 14 13 11 16 16 C 1.53039 * 109.27498 * 177.55744 * 15 14 13 17 17 N 1.46843 * 109.52391 * 300.81655 * 16 15 14 18 18 C 1.38412 * 111.00133 * 185.84094 * 17 16 15 19 19 N 1.32490 * 119.21756 * 235.52818 * 18 17 16 20 20 C 1.32279 * 120.73929 * 179.72038 * 19 18 17 21 21 C 1.38603 * 119.19520 * 0.53802 * 20 19 18 22 22 C 1.38609 * 118.55916 * 359.73246 * 21 20 19 23 23 N 1.32274 * 119.19537 * 359.97438 * 22 21 20 24 24 C 1.46854 * 111.19690 * 61.74512 * 17 16 15 25 25 C 1.53029 * 109.52283 * 298.25524 * 24 17 16 26 26 H 0.96992 * 120.00554 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46940 * 60.00654 * 10 9 7 28 28 H 1.08996 * 109.47839 * 300.00694 * 10 9 7 29 29 H 0.97003 * 119.99706 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.57436 * 325.15457 * 14 13 11 31 31 H 1.08997 * 109.50088 * 297.49652 * 15 14 13 32 32 H 1.09004 * 109.50324 * 57.61826 * 15 14 13 33 33 H 1.09001 * 109.45805 * 180.80724 * 16 15 14 34 34 H 1.08997 * 109.46104 * 60.83468 * 16 15 14 35 35 H 1.07997 * 120.39733 * 180.29570 * 20 19 18 36 36 H 1.07999 * 120.72048 * 179.71331 * 21 20 19 37 37 H 1.07992 * 120.39965 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.45788 * 178.23958 * 24 17 16 39 39 H 1.09003 * 109.45264 * 58.26841 * 24 17 16 40 40 H 1.08994 * 109.50822 * 299.23828 * 25 24 17 41 41 H 1.09001 * 109.50199 * 179.11868 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0021 13 7 2.8445 -6.3430 -0.0008 14 6 2.3308 -7.7150 -0.0019 15 6 2.0425 -8.1522 -1.4409 16 6 1.5643 -9.6059 -1.4409 17 7 2.5988 -10.4629 -0.8480 18 6 2.2544 -11.7996 -0.9506 19 7 2.2075 -12.5414 0.1461 20 6 1.8767 -13.8206 0.0835 21 6 1.5884 -14.3849 -1.1492 22 6 1.6524 -13.5815 -2.2769 23 7 1.9841 -12.3080 -2.1439 24 6 2.8588 -10.0923 0.5490 25 6 3.3757 -8.6532 0.6086 26 1 -0.4850 0.8399 0.0004 27 1 3.1246 -3.7312 0.8896 28 1 3.1248 -3.7312 -0.8904 29 1 3.8013 -6.1833 -0.0004 30 1 1.4128 -7.7617 0.5838 31 1 1.2681 -7.5143 -1.8668 32 1 2.9520 -8.0683 -2.0358 33 1 1.3719 -9.9248 -2.4654 34 1 0.6473 -9.6866 -0.8572 35 1 1.8355 -14.4190 0.9816 36 1 1.3200 -15.4279 -1.2294 37 1 1.4340 -13.9904 -3.2523 38 1 3.6065 -10.7645 0.9699 39 1 1.9356 -10.1707 1.1233 40 1 4.3061 -8.5770 0.0459 41 1 3.5537 -8.3731 1.6468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048779597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:37 Heat of formation + Delta-G solvation = 3.397087 kcal Electronic energy + Delta-G solvation = -23701.114641 eV Core-core repulsion = 20127.672795 eV Total energy + Delta-G solvation = -3573.441846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.26953 -40.94675 -39.47092 -36.29889 -34.76267 -34.57942 -33.54104 -32.04277 -31.51406 -30.03295 -27.66987 -25.90416 -25.65688 -23.94347 -23.50462 -21.66069 -21.19602 -19.79862 -19.02231 -18.41379 -17.76886 -17.47882 -16.87434 -16.67049 -16.56581 -16.28546 -15.96004 -15.64732 -15.51484 -14.89763 -14.81560 -14.66975 -14.45931 -14.37779 -14.22344 -13.60052 -13.26510 -13.15911 -12.89052 -12.82547 -12.57168 -12.38025 -12.07112 -11.92883 -11.86404 -11.77227 -11.65177 -11.16974 -11.13795 -10.89847 -10.26557 -10.19836 -10.07534 -9.44474 -8.65800 -8.34133 -6.11997 -0.02013 0.19498 1.27538 1.42817 1.47505 1.57954 1.62506 2.09217 2.24950 2.29547 2.79930 2.99940 3.20646 3.32385 3.53617 3.69052 3.77091 3.82704 3.92735 4.02584 4.08144 4.18680 4.29619 4.32951 4.34952 4.42736 4.49556 4.53741 4.61822 4.69658 4.81128 4.91880 4.94276 5.07376 5.17240 5.33703 5.42544 5.49181 5.59088 5.74040 6.20459 6.25851 6.53585 7.07190 7.15148 7.26767 8.75042 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.047499 B = 0.001979 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.348193 B =14146.244735 C =14325.306906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.706 5.706 14 C 0.144 3.856 15 C -0.120 4.120 16 C 0.082 3.918 17 N -0.466 5.466 18 C 0.471 3.529 19 N -0.572 5.572 20 C 0.159 3.841 21 C -0.248 4.248 22 C 0.160 3.840 23 N -0.560 5.560 24 C 0.081 3.919 25 C -0.113 4.113 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.418 0.582 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.199 0.801 36 H 0.184 0.816 37 H 0.199 0.801 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.596 -30.704 -1.024 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.360 5.360 14 C 0.039 3.961 15 C -0.159 4.159 16 C -0.044 4.044 17 N -0.186 5.186 18 C 0.115 3.885 19 N -0.293 5.293 20 C -0.007 4.007 21 C -0.270 4.270 22 C -0.007 4.007 23 N -0.279 5.279 24 C -0.046 4.046 25 C -0.152 4.152 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.216 0.784 36 H 0.202 0.798 37 H 0.215 0.785 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.170 -29.829 -1.198 30.951 hybrid contribution 0.924 0.426 0.187 1.035 sum 9.094 -29.403 -1.011 30.793 Atomic orbital electron populations 1.70182 1.07971 1.28585 1.48064 1.26137 0.95976 1.03349 0.93786 0.84950 0.78211 0.76015 0.78774 1.19345 1.20329 1.18153 1.23211 0.95367 0.92007 1.58768 0.89871 1.85578 1.10646 0.99257 1.97049 1.23379 1.03509 0.94329 1.06852 1.20073 0.86271 0.86656 0.74841 1.90691 1.17416 1.86048 1.50103 1.45767 1.10324 1.04502 1.75387 1.21032 0.98090 0.80648 0.96281 1.21938 1.02691 0.93888 0.97432 1.21987 0.90290 0.91577 1.00570 1.58431 1.40886 0.98597 1.20656 1.21182 0.89919 0.92106 0.85334 1.68394 1.20007 1.09469 1.31382 1.23744 0.87691 0.89321 0.99899 1.23147 1.05408 1.04564 0.93920 1.23756 0.88335 0.87071 1.01509 1.68029 1.17381 1.16795 1.25695 1.21942 1.01634 0.96273 0.84786 1.21891 0.98480 0.91785 1.03006 0.92022 0.87128 0.87198 0.74497 0.91781 0.92112 0.89443 0.88865 0.94596 0.78440 0.79827 0.78474 0.88313 0.93607 0.88749 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.31 13.22 21.65 0.29 -56.03 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.55 -31.25 9.50 67.95 0.65 -30.61 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.54 19.60 7.82 87.66 0.69 20.29 16 12 O -0.56 -26.10 15.52 -3.04 -0.05 -26.14 16 13 N -0.71 -17.56 5.08 -442.13 -2.25 -19.81 16 14 C 0.14 3.34 2.52 45.07 0.11 3.45 16 15 C -0.12 -2.82 5.67 30.65 0.17 -2.64 16 16 C 0.08 1.86 5.33 86.33 0.46 2.32 16 17 N -0.47 -10.00 4.72 -708.93 -3.34 -13.35 16 18 C 0.47 10.34 7.17 261.49 1.88 12.21 16 19 N -0.57 -10.98 8.67 -197.99 -1.72 -12.69 16 20 C 0.16 1.87 11.30 84.71 0.96 2.83 16 21 C -0.25 -2.08 10.16 22.45 0.23 -1.85 16 22 C 0.16 2.00 11.30 84.72 0.96 2.95 16 23 N -0.56 -11.60 9.65 -197.99 -1.91 -13.51 16 24 C 0.08 1.49 4.63 86.32 0.40 1.89 16 25 C -0.11 -1.84 5.57 30.65 0.17 -1.66 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.11 3.89 8.14 -2.39 -0.02 3.88 16 28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 29 H 0.42 7.36 8.61 -92.71 -0.80 6.57 16 30 H 0.06 1.83 7.58 -2.39 -0.02 1.82 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.09 2.15 7.55 -2.39 -0.02 2.13 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.10 1.72 7.67 -2.39 -0.02 1.70 16 39 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -82.10 357.73 -0.29 -82.40 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.25 Total: 17.32 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 7.57 Total: 5.68 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -8.93 Total: -115.39 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -82.10 -0.29 -82.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048779597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.794 kcal (2) G-P(sol) polarization free energy of solvation -82.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds